Wall clock time and date at job start Wed Apr 1 2020 06:25:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.49954 * 2 1 4 4 C 1.53046 * 109.49670 * 239.93856 * 2 1 3 5 5 C 1.53040 * 109.53704 * 301.41775 * 4 2 1 6 6 C 1.53199 * 109.31150 * 298.63182 * 5 4 2 7 7 N 1.46928 * 108.77240 * 54.63460 * 6 5 4 8 8 C 1.34781 * 120.62816 * 126.37594 * 7 6 5 9 9 O 1.21274 * 119.99916 * 174.40545 * 8 7 6 10 10 C 1.50704 * 119.99870 * 354.39699 * 8 7 6 11 11 N 1.46500 * 109.46923 * 180.02562 * 10 8 7 12 12 C 1.35302 * 125.86888 * 124.99973 * 11 10 8 13 13 C 1.35354 * 106.18084 * 180.02562 * 12 11 10 14 14 C 1.50693 * 126.75804 * 180.02562 * 13 12 11 15 15 C 1.53010 * 117.49619 * 343.60289 * 14 13 12 16 16 C 1.53002 * 59.99923 * 252.51381 * 15 14 13 17 17 N 1.33773 * 106.48831 * 0.02562 * 13 12 11 18 18 N 1.28630 * 108.89208 * 0.02562 * 17 13 12 19 19 C 1.46924 * 118.74046 * 306.64191 * 7 6 5 20 20 H 1.09000 * 109.59040 * 293.57447 * 19 7 6 21 21 C 1.53001 * 109.58629 * 173.14379 * 19 7 6 22 22 N 1.46499 * 109.47174 * 181.89301 * 21 19 7 23 23 C 1.36940 * 120.00036 * 184.94900 * 22 21 19 24 24 H 1.07994 * 119.99658 * 0.02562 * 23 22 21 25 25 C 1.38810 * 119.99612 * 180.02562 * 23 22 21 26 26 N 1.31617 * 120.00260 * 359.97438 * 25 23 22 27 27 Si 1.86805 * 119.99720 * 179.97438 * 25 23 22 28 28 H 1.48498 * 109.47007 * 59.99905 * 27 25 23 29 29 H 1.48497 * 109.47140 * 179.97438 * 27 25 23 30 30 H 1.48502 * 109.47241 * 300.00215 * 27 25 23 31 31 H 1.08994 * 109.47079 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.46618 * 300.06486 * 1 2 3 33 33 H 1.08999 * 109.47048 * 60.06009 * 1 2 3 34 34 H 1.08998 * 109.46260 * 181.39225 * 4 2 1 35 35 H 1.09005 * 109.44670 * 61.42483 * 4 2 1 36 36 H 1.08996 * 109.49863 * 178.68512 * 5 4 2 37 37 H 1.08999 * 109.50148 * 58.57746 * 5 4 2 38 38 H 1.09001 * 109.58548 * 294.85149 * 6 5 4 39 39 H 1.08998 * 109.70717 * 174.49364 * 6 5 4 40 40 H 1.08999 * 109.46980 * 60.00654 * 10 8 7 41 41 H 1.09000 * 109.47007 * 300.00366 * 10 8 7 42 42 H 1.08006 * 126.91323 * 0.06833 * 12 11 10 43 43 H 1.08999 * 115.55127 * 129.31080 * 14 13 12 44 44 H 1.08994 * 117.49600 * 359.97438 * 15 14 13 45 45 H 1.08998 * 117.49830 * 145.02163 * 15 14 13 46 46 H 1.09002 * 117.49433 * 252.51489 * 16 15 14 47 47 H 1.09000 * 117.52101 * 107.48433 * 16 15 14 48 48 H 1.08992 * 109.47567 * 301.89769 * 21 19 7 49 49 H 1.09004 * 109.46813 * 61.89496 * 21 19 7 50 50 H 0.97005 * 119.99826 * 4.94882 * 22 21 19 51 51 H 0.97008 * 119.99815 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0408 -0.7227 -1.2486 5 6 1.5029 -2.1553 -1.2668 6 6 2.0139 -2.9041 -0.0318 7 7 1.6515 -2.1385 1.1688 8 6 0.9740 -2.7226 2.1770 9 8 0.7692 -2.1112 3.2041 10 6 0.4709 -4.1353 2.0279 11 7 -0.2281 -4.5364 3.2513 12 6 -1.4945 -5.0073 3.3227 13 6 -1.7334 -5.2501 4.6326 14 6 -3.0072 -5.7870 5.2326 15 6 -4.2704 -5.7361 4.3707 16 6 -4.1142 -4.7817 5.5562 17 7 -0.6161 -4.9196 5.2899 18 7 0.2564 -4.4995 4.4433 19 6 2.0365 -0.7228 1.2469 20 1 3.1223 -0.6415 1.2972 21 6 1.4135 -0.0898 2.4927 22 7 1.7617 1.3323 2.5440 23 6 1.3991 2.0873 3.6274 24 1 0.8569 1.6343 4.4441 25 6 1.7285 3.4349 3.6756 26 7 2.3898 3.9868 2.6804 27 14 1.2333 4.4651 5.1532 28 1 1.8512 3.9005 6.3798 29 1 1.7005 5.8616 4.9619 30 1 -0.2451 4.4519 5.2927 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3632 0.5149 0.8894 33 1 -0.3633 0.5129 -0.8905 34 1 3.1305 -0.7440 -1.2357 35 1 1.6985 -0.1950 -2.1389 36 1 1.8479 -2.6621 -2.1680 37 1 0.4132 -2.1350 -1.2547 38 1 3.0978 -3.0043 -0.0878 39 1 1.5574 -3.8928 0.0136 40 1 1.3135 -4.8046 1.8544 41 1 -0.2158 -4.1891 1.1831 42 1 -2.1773 -5.1596 2.4998 43 1 -2.8888 -6.6384 5.9028 44 1 -4.1800 -5.3139 3.3699 45 1 -4.9832 -6.5542 4.4736 46 1 -4.7244 -4.9720 6.4392 47 1 -3.9210 -3.7319 5.3356 48 1 0.3297 -0.1973 2.4517 49 1 1.7947 -0.5895 3.3833 50 1 2.2491 1.7391 1.8105 51 1 2.6203 4.9285 2.7144 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001319849883.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:25:10 Heat of formation + Delta-G solvation = 129.751568 kcal Electronic energy + Delta-G solvation = -31823.333241 eV Core-core repulsion = 27762.405662 eV Total energy + Delta-G solvation = -4060.927579 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.34084 -40.75601 -37.95804 -37.42105 -35.16414 -34.31701 -33.46860 -32.18166 -30.79403 -30.11339 -29.19407 -26.89652 -26.07076 -24.35327 -24.20884 -23.27301 -22.83372 -22.02970 -21.15674 -20.86180 -20.02002 -18.40035 -17.70360 -17.44109 -16.98924 -16.27034 -15.98033 -15.55692 -15.28173 -14.99191 -14.80031 -14.57752 -14.40775 -14.27128 -14.06498 -13.68151 -13.45014 -13.16739 -12.87761 -12.68558 -12.52192 -12.31221 -11.97048 -11.79167 -11.62177 -11.51689 -11.43098 -11.25653 -11.04934 -10.93605 -10.89365 -10.76967 -10.63336 -10.46984 -10.42513 -10.29827 -10.13173 -9.97122 -9.63647 -9.10937 -8.95468 -8.76188 -8.46870 -6.76783 -5.66377 -2.92688 1.47502 2.04365 2.45547 2.48398 2.87961 3.53080 3.54159 3.55911 3.59125 3.95085 4.13334 4.30549 4.48210 4.54532 4.59594 4.63413 4.69874 4.71284 4.73384 4.84274 4.99673 5.06899 5.15978 5.18569 5.22499 5.36516 5.42805 5.58976 5.60451 5.66073 5.68115 5.70473 5.82982 5.84145 5.87709 5.89088 5.93924 5.96552 6.05365 6.14295 6.21891 6.30973 6.33538 6.39905 6.65995 6.71675 7.05983 7.22935 7.37036 7.84847 8.12311 8.52618 8.54569 9.64542 10.22310 10.57361 11.57018 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.008420 B = 0.003482 C = 0.002687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3324.794286 B = 8038.950445 C =10419.790185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.100 4.100 3 H 0.094 0.906 4 C -0.116 4.116 5 C -0.137 4.137 6 C 0.105 3.895 7 N -0.600 5.600 8 C 0.495 3.505 9 O -0.480 6.480 10 C 0.095 3.905 11 N -0.280 5.280 12 C -0.051 4.051 13 C 0.009 3.991 14 C -0.070 4.070 15 C -0.171 4.171 16 C -0.165 4.165 17 N -0.265 5.265 18 N -0.046 5.046 19 C 0.147 3.853 20 H 0.073 0.927 21 C 0.158 3.842 22 N -0.735 5.735 23 C -0.226 4.226 24 H 0.069 0.931 25 C -0.017 4.017 26 N -0.939 5.939 27 Si 0.905 3.095 28 H -0.286 1.286 29 H -0.292 1.292 30 H -0.287 1.287 31 H 0.043 0.957 32 H 0.071 0.929 33 H 0.047 0.953 34 H 0.063 0.937 35 H 0.065 0.935 36 H 0.072 0.928 37 H 0.071 0.929 38 H 0.074 0.926 39 H 0.077 0.923 40 H 0.125 0.875 41 H 0.130 0.870 42 H 0.187 0.813 43 H 0.121 0.879 44 H 0.095 0.905 45 H 0.101 0.899 46 H 0.101 0.899 47 H 0.097 0.903 48 H 0.027 0.973 49 H 0.055 0.945 50 H 0.378 0.622 51 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.039 -23.649 -11.142 27.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.119 4.119 3 H 0.112 0.888 4 C -0.154 4.154 5 C -0.175 4.175 6 C -0.018 4.018 7 N -0.335 5.335 8 C 0.279 3.721 9 O -0.352 6.352 10 C -0.031 4.031 11 N -0.073 5.073 12 C -0.201 4.201 13 C -0.128 4.128 14 C -0.091 4.091 15 C -0.208 4.208 16 C -0.202 4.202 17 N -0.131 5.131 18 N -0.026 5.026 19 C 0.044 3.956 20 H 0.091 0.909 21 C 0.031 3.969 22 N -0.381 5.381 23 C -0.357 4.357 24 H 0.087 0.913 25 C -0.212 4.212 26 N -0.589 5.589 27 Si 0.737 3.263 28 H -0.213 1.213 29 H -0.218 1.218 30 H -0.214 1.214 31 H 0.062 0.938 32 H 0.090 0.910 33 H 0.066 0.934 34 H 0.082 0.918 35 H 0.084 0.916 36 H 0.091 0.909 37 H 0.089 0.911 38 H 0.093 0.907 39 H 0.095 0.905 40 H 0.143 0.857 41 H 0.148 0.852 42 H 0.204 0.796 43 H 0.139 0.861 44 H 0.113 0.887 45 H 0.120 0.880 46 H 0.119 0.881 47 H 0.115 0.885 48 H 0.045 0.955 49 H 0.072 0.928 50 H 0.212 0.788 51 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -6.955 -22.911 -9.558 25.781 hybrid contribution -0.848 0.578 -0.537 1.158 sum -7.804 -22.334 -10.096 25.722 Atomic orbital electron populations 1.21825 0.94972 1.00606 1.02426 1.21397 0.96827 1.00430 0.93231 0.88800 1.21584 1.00522 0.94867 0.98415 1.21965 1.01730 0.96822 0.96958 1.21794 1.00906 0.94284 0.84831 1.48044 1.56198 1.11848 1.17452 1.20137 0.80059 0.87404 0.84549 1.90976 1.54784 1.62151 1.27267 1.22009 0.99784 0.97401 0.83884 1.46753 1.10647 1.41953 1.07964 1.23180 0.88392 1.08108 1.00382 1.20972 0.96076 1.05622 0.90163 1.19973 0.84415 1.01504 1.03158 1.23007 0.98781 1.02727 0.96327 1.23020 1.00699 0.96930 0.99596 1.75097 0.99557 1.13753 1.24735 1.78494 1.21572 1.16459 0.86061 1.21558 0.99089 0.77534 0.97384 0.90875 1.21320 0.97014 0.85146 0.93381 1.42517 1.68552 1.04200 1.22823 1.19184 1.28683 0.90844 0.97004 0.91331 1.24676 1.01523 0.96863 0.98151 1.69643 1.45407 1.11949 1.31872 0.86280 0.78063 0.79416 0.82579 1.21307 1.21788 1.21414 0.93760 0.91038 0.93399 0.91804 0.91641 0.90908 0.91061 0.90744 0.90472 0.85715 0.85177 0.79589 0.86130 0.88668 0.88038 0.88078 0.88454 0.95513 0.92766 0.78760 0.93697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.09 8.18 37.16 0.30 -1.78 16 2 C -0.10 -1.45 2.52 -90.72 -0.23 -1.68 16 3 H 0.09 1.64 6.86 -51.93 -0.36 1.29 16 4 C -0.12 -1.21 5.43 -26.69 -0.14 -1.35 16 5 C -0.14 -1.03 5.74 -26.61 -0.15 -1.18 16 6 C 0.11 0.79 6.35 -3.71 -0.02 0.76 16 7 N -0.60 -7.41 2.42 -165.47 -0.40 -7.81 16 8 C 0.49 6.89 7.54 -10.98 -0.08 6.81 16 9 O -0.48 -9.49 11.24 5.56 0.06 -9.43 16 10 C 0.09 0.85 5.29 -5.19 -0.03 0.82 16 11 N -0.28 -3.55 3.20 -62.44 -0.20 -3.75 16 12 C -0.05 -0.54 10.89 -17.05 -0.19 -0.73 16 13 C 0.01 0.11 6.88 -82.78 -0.57 -0.46 16 14 C -0.07 -0.68 6.33 -91.77 -0.58 -1.26 16 15 C -0.17 -1.18 10.02 -26.72 -0.27 -1.45 16 16 C -0.16 -1.47 10.23 -26.73 -0.27 -1.75 16 17 N -0.26 -4.45 12.41 33.29 0.41 -4.04 16 18 N -0.05 -0.78 12.12 60.35 0.73 -0.05 16 19 C 0.15 2.39 2.80 -67.82 -0.19 2.20 16 20 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 21 C 0.16 3.48 3.58 -4.04 -0.01 3.47 16 22 N -0.73 -19.33 5.38 -59.91 -0.32 -19.65 16 23 C -0.23 -6.71 9.99 -15.06 -0.15 -6.86 16 24 H 0.07 2.06 7.83 -52.49 -0.41 1.65 16 25 C -0.02 -0.51 5.50 -17.43 -0.10 -0.61 16 26 N -0.94 -29.01 13.06 55.49 0.72 -28.29 16 27 Si 0.91 23.66 29.55 -169.99 -5.02 18.64 16 28 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 29 H -0.29 -7.58 7.11 56.52 0.40 -7.18 16 30 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 31 H 0.04 0.57 5.97 -51.93 -0.31 0.26 16 32 H 0.07 1.34 6.37 -51.93 -0.33 1.01 16 33 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 35 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 36 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 37 H 0.07 0.55 6.33 -51.93 -0.33 0.23 16 38 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.08 0.32 5.93 -51.93 -0.31 0.01 16 40 H 0.13 0.76 7.71 -51.93 -0.40 0.36 16 41 H 0.13 0.62 7.85 -51.93 -0.41 0.21 16 42 H 0.19 1.16 7.46 -52.48 -0.39 0.77 16 43 H 0.12 1.05 8.14 -51.93 -0.42 0.63 16 44 H 0.09 0.59 7.23 -51.93 -0.38 0.21 16 45 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 46 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 47 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 48 H 0.03 0.64 5.52 -51.93 -0.29 0.35 16 49 H 0.05 1.37 6.23 -51.93 -0.32 1.04 16 50 H 0.38 10.11 6.33 -40.82 -0.26 9.85 16 51 H 0.25 7.60 8.31 -40.82 -0.34 7.26 16 LS Contribution 395.33 15.07 5.96 5.96 Total: -1.00 -38.39 395.33 -8.59 -46.98 By element: Atomic # 1 Polarization: 14.33 SS G_CDS: -7.85 Total: 6.48 kcal Atomic # 6 Polarization: -2.36 SS G_CDS: -2.68 Total: -5.05 kcal Atomic # 7 Polarization: -64.53 SS G_CDS: 0.95 Total: -63.58 kcal Atomic # 8 Polarization: -9.49 SS G_CDS: 0.06 Total: -9.43 kcal Atomic # 14 Polarization: 23.66 SS G_CDS: -5.02 Total: 18.64 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -38.39 -8.59 -46.98 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319849883.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 176.731 kcal (2) G-P(sol) polarization free energy of solvation -38.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 138.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.979 kcal (6) G-S(sol) free energy of system = (1) + (5) 129.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds