Wall clock time and date at job start Wed Apr 1 2020 06:25:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.49954 * 2 1 4 4 C 1.53046 * 109.49670 * 239.93856 * 2 1 3 5 5 C 1.53040 * 109.53704 * 301.41775 * 4 2 1 6 6 C 1.53199 * 109.31150 * 298.63182 * 5 4 2 7 7 N 1.46928 * 108.77240 * 54.63460 * 6 5 4 8 8 C 1.34781 * 120.62816 * 126.37594 * 7 6 5 9 9 O 1.21274 * 119.99916 * 174.40545 * 8 7 6 10 10 C 1.50704 * 119.99870 * 354.39699 * 8 7 6 11 11 N 1.46500 * 109.46923 * 180.02562 * 10 8 7 12 12 C 1.35302 * 125.86888 * 124.99973 * 11 10 8 13 13 C 1.35354 * 106.18084 * 180.02562 * 12 11 10 14 14 C 1.50693 * 126.75804 * 180.02562 * 13 12 11 15 15 C 1.53010 * 117.49619 * 343.60289 * 14 13 12 16 16 C 1.53002 * 59.99923 * 252.51381 * 15 14 13 17 17 N 1.33773 * 106.48831 * 0.02562 * 13 12 11 18 18 N 1.28630 * 108.89208 * 0.02562 * 17 13 12 19 19 C 1.46924 * 118.74046 * 306.64191 * 7 6 5 20 20 H 1.09000 * 109.59040 * 293.57447 * 19 7 6 21 21 C 1.53001 * 109.58629 * 173.14379 * 19 7 6 22 22 N 1.46499 * 109.47174 * 181.89301 * 21 19 7 23 23 C 1.36940 * 120.00036 * 184.94900 * 22 21 19 24 24 H 1.07994 * 119.99658 * 0.02562 * 23 22 21 25 25 C 1.38810 * 119.99612 * 180.02562 * 23 22 21 26 26 N 1.31617 * 120.00260 * 359.97438 * 25 23 22 27 27 Si 1.86805 * 119.99720 * 179.97438 * 25 23 22 28 28 H 1.48498 * 109.47007 * 59.99905 * 27 25 23 29 29 H 1.48497 * 109.47140 * 179.97438 * 27 25 23 30 30 H 1.48502 * 109.47241 * 300.00215 * 27 25 23 31 31 H 1.08994 * 109.47079 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.46618 * 300.06486 * 1 2 3 33 33 H 1.08999 * 109.47048 * 60.06009 * 1 2 3 34 34 H 1.08998 * 109.46260 * 181.39225 * 4 2 1 35 35 H 1.09005 * 109.44670 * 61.42483 * 4 2 1 36 36 H 1.08996 * 109.49863 * 178.68512 * 5 4 2 37 37 H 1.08999 * 109.50148 * 58.57746 * 5 4 2 38 38 H 1.09001 * 109.58548 * 294.85149 * 6 5 4 39 39 H 1.08998 * 109.70717 * 174.49364 * 6 5 4 40 40 H 1.08999 * 109.46980 * 60.00654 * 10 8 7 41 41 H 1.09000 * 109.47007 * 300.00366 * 10 8 7 42 42 H 1.08006 * 126.91323 * 0.06833 * 12 11 10 43 43 H 1.08999 * 115.55127 * 129.31080 * 14 13 12 44 44 H 1.08994 * 117.49600 * 359.97438 * 15 14 13 45 45 H 1.08998 * 117.49830 * 145.02163 * 15 14 13 46 46 H 1.09002 * 117.49433 * 252.51489 * 16 15 14 47 47 H 1.09000 * 117.52101 * 107.48433 * 16 15 14 48 48 H 1.08992 * 109.47567 * 301.89769 * 21 19 7 49 49 H 1.09004 * 109.46813 * 61.89496 * 21 19 7 50 50 H 0.97005 * 119.99826 * 4.94882 * 22 21 19 51 51 H 0.97008 * 119.99815 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0408 -0.7227 -1.2486 5 6 1.5029 -2.1553 -1.2668 6 6 2.0139 -2.9041 -0.0318 7 7 1.6515 -2.1385 1.1688 8 6 0.9740 -2.7226 2.1770 9 8 0.7692 -2.1112 3.2041 10 6 0.4709 -4.1353 2.0279 11 7 -0.2281 -4.5364 3.2513 12 6 -1.4945 -5.0073 3.3227 13 6 -1.7334 -5.2501 4.6326 14 6 -3.0072 -5.7870 5.2326 15 6 -4.2704 -5.7361 4.3707 16 6 -4.1142 -4.7817 5.5562 17 7 -0.6161 -4.9196 5.2899 18 7 0.2564 -4.4995 4.4433 19 6 2.0365 -0.7228 1.2469 20 1 3.1223 -0.6415 1.2972 21 6 1.4135 -0.0898 2.4927 22 7 1.7617 1.3323 2.5440 23 6 1.3991 2.0873 3.6274 24 1 0.8569 1.6343 4.4441 25 6 1.7285 3.4349 3.6756 26 7 2.3898 3.9868 2.6804 27 14 1.2333 4.4651 5.1532 28 1 1.8512 3.9005 6.3798 29 1 1.7005 5.8616 4.9619 30 1 -0.2451 4.4519 5.2927 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3632 0.5149 0.8894 33 1 -0.3633 0.5129 -0.8905 34 1 3.1305 -0.7440 -1.2357 35 1 1.6985 -0.1950 -2.1389 36 1 1.8479 -2.6621 -2.1680 37 1 0.4132 -2.1350 -1.2547 38 1 3.0978 -3.0043 -0.0878 39 1 1.5574 -3.8928 0.0136 40 1 1.3135 -4.8046 1.8544 41 1 -0.2158 -4.1891 1.1831 42 1 -2.1773 -5.1596 2.4998 43 1 -2.8888 -6.6384 5.9028 44 1 -4.1800 -5.3139 3.3699 45 1 -4.9832 -6.5542 4.4736 46 1 -4.7244 -4.9720 6.4392 47 1 -3.9210 -3.7319 5.3356 48 1 0.3297 -0.1973 2.4517 49 1 1.7947 -0.5895 3.3833 50 1 2.2491 1.7391 1.8105 51 1 2.6203 4.9285 2.7144 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001319849883.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:25:09 Heat of formation + Delta-G solvation = 101.899616 kcal Electronic energy + Delta-G solvation = -31824.540992 eV Core-core repulsion = 27762.405662 eV Total energy + Delta-G solvation = -4062.135330 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -44.27775 -41.85911 -39.03012 -38.13633 -36.75112 -35.50879 -34.62632 -33.78551 -31.80763 -31.68636 -30.19757 -28.21888 -27.32041 -25.71502 -25.03895 -24.80890 -23.73206 -22.92901 -22.40774 -21.73895 -20.97683 -19.50889 -19.19645 -18.54417 -18.32910 -17.26864 -17.16442 -16.53453 -16.36367 -16.24748 -15.98018 -15.68392 -15.43627 -15.31077 -15.20280 -15.01296 -14.81181 -14.56771 -14.17177 -13.69035 -13.62172 -13.35200 -13.21968 -13.08279 -12.82458 -12.66609 -12.54447 -12.46551 -12.29894 -12.22213 -12.10937 -12.05047 -11.97822 -11.81750 -11.68605 -11.38641 -11.26459 -11.20095 -11.12575 -10.99027 -10.20440 -9.97397 -9.62877 -8.98802 -8.01041 -5.28156 0.57984 1.27340 1.38428 1.42192 1.46628 1.49028 1.50750 1.91070 2.51139 2.87179 3.15206 3.31267 3.38140 3.70263 3.75467 3.82557 3.88393 3.91731 3.96114 3.99964 4.06474 4.08590 4.13877 4.21760 4.26915 4.39364 4.41710 4.51108 4.62139 4.71153 4.78335 4.79156 4.84342 4.88383 4.93946 4.98022 5.03973 5.14809 5.20173 5.21490 5.22950 5.26728 5.30364 5.35177 5.37294 5.41076 5.54301 5.58865 5.67996 6.22092 6.36414 7.09645 7.28516 7.54123 8.03861 8.31243 9.22060 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.008420 B = 0.003482 C = 0.002687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3324.794286 B = 8038.950445 C =10419.790185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.095 4.095 3 H 0.053 0.947 4 C -0.112 4.112 5 C -0.129 4.129 6 C 0.095 3.905 7 N -0.593 5.593 8 C 0.485 3.515 9 O -0.554 6.554 10 C 0.097 3.903 11 N -0.278 5.278 12 C -0.031 4.031 13 C -0.012 4.012 14 C -0.089 4.089 15 C -0.136 4.136 16 C -0.182 4.182 17 N -0.314 5.314 18 N -0.104 5.104 19 C 0.158 3.842 20 H 0.061 0.939 21 C 0.174 3.826 22 N -0.741 5.741 23 C -0.245 4.245 24 H 0.054 0.946 25 C -0.067 4.067 26 N -0.964 5.964 27 Si 0.969 3.031 28 H -0.284 1.284 29 H -0.283 1.283 30 H -0.281 1.281 31 H 0.070 0.930 32 H 0.019 0.981 33 H 0.061 0.939 34 H 0.066 0.934 35 H 0.075 0.925 36 H 0.111 0.889 37 H 0.076 0.924 38 H 0.085 0.915 39 H 0.128 0.872 40 H 0.163 0.837 41 H 0.189 0.811 42 H 0.240 0.760 43 H 0.123 0.877 44 H 0.110 0.890 45 H 0.127 0.873 46 H 0.111 0.889 47 H 0.072 0.928 48 H 0.009 0.991 49 H 0.018 0.982 50 H 0.374 0.626 51 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.521 -26.741 -14.744 31.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.114 4.114 3 H 0.071 0.929 4 C -0.149 4.149 5 C -0.167 4.167 6 C -0.026 4.026 7 N -0.327 5.327 8 C 0.271 3.729 9 O -0.430 6.430 10 C -0.026 4.026 11 N -0.072 5.072 12 C -0.181 4.181 13 C -0.150 4.150 14 C -0.109 4.109 15 C -0.173 4.173 16 C -0.220 4.220 17 N -0.180 5.180 18 N -0.083 5.083 19 C 0.054 3.946 20 H 0.079 0.921 21 C 0.048 3.952 22 N -0.387 5.387 23 C -0.377 4.377 24 H 0.072 0.928 25 C -0.260 4.260 26 N -0.614 5.614 27 Si 0.798 3.202 28 H -0.210 1.210 29 H -0.208 1.208 30 H -0.207 1.207 31 H 0.089 0.911 32 H 0.038 0.962 33 H 0.080 0.920 34 H 0.085 0.915 35 H 0.093 0.907 36 H 0.129 0.871 37 H 0.095 0.905 38 H 0.103 0.897 39 H 0.145 0.855 40 H 0.181 0.819 41 H 0.206 0.794 42 H 0.256 0.744 43 H 0.141 0.859 44 H 0.128 0.872 45 H 0.145 0.855 46 H 0.130 0.870 47 H 0.091 0.909 48 H 0.027 0.973 49 H 0.036 0.964 50 H 0.207 0.793 51 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -8.406 -26.051 -13.205 30.392 hybrid contribution -0.409 1.526 0.557 1.675 sum -8.815 -24.525 -12.647 28.968 Atomic orbital electron populations 1.21725 0.94991 1.01665 1.00499 1.21291 0.96675 0.98727 0.94755 0.92872 1.21563 1.00769 0.96837 0.95741 1.21979 1.01939 0.94441 0.98349 1.22311 1.02312 0.95689 0.82261 1.48108 1.55397 1.10130 1.19093 1.21091 0.79079 0.89217 0.83474 1.90967 1.57513 1.64461 1.30092 1.22452 1.02418 0.93730 0.83987 1.47065 1.11419 1.40914 1.07800 1.23965 0.87858 1.05394 1.00928 1.21627 0.96167 1.05861 0.91347 1.20085 0.84114 1.01699 1.04970 1.23166 0.96474 1.01815 0.95854 1.23032 1.01272 0.95885 1.01833 1.75004 1.01399 1.15158 1.26459 1.78410 1.22926 1.19020 0.87900 1.21084 0.97803 0.80464 0.95275 0.92061 1.21108 0.96033 0.82829 0.95228 1.42649 1.68257 1.05949 1.21797 1.19386 1.28851 0.91800 0.97659 0.92829 1.25448 1.01770 0.97741 1.01047 1.69778 1.46137 1.12115 1.33404 0.85285 0.77892 0.77866 0.79173 1.21020 1.20840 1.20721 0.91124 0.96189 0.91956 0.91514 0.90665 0.87109 0.90539 0.89678 0.85452 0.81925 0.79369 0.74419 0.85902 0.87197 0.85517 0.87021 0.90943 0.97274 0.96439 0.79309 0.93738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.89 8.18 71.98 0.59 -3.30 16 2 C -0.09 -2.81 2.52 -10.86 -0.03 -2.83 16 3 H 0.05 1.99 6.86 -2.39 -0.02 1.97 16 4 C -0.11 -2.01 5.43 30.62 0.17 -1.85 16 5 C -0.13 -1.23 5.74 30.67 0.18 -1.05 16 6 C 0.09 0.93 6.35 86.36 0.55 1.48 16 7 N -0.59 -13.67 2.42 -795.81 -1.92 -15.59 16 8 C 0.48 13.05 7.54 87.66 0.66 13.71 16 9 O -0.55 -23.26 11.24 -3.01 -0.03 -23.29 16 10 C 0.10 1.35 5.29 85.63 0.45 1.81 16 11 N -0.28 -6.57 3.20 -351.46 -1.12 -7.69 16 12 C -0.03 -0.58 10.89 83.49 0.91 0.33 16 13 C -0.01 -0.30 6.88 41.59 0.29 -0.01 16 14 C -0.09 -1.63 6.33 -11.54 -0.07 -1.70 16 15 C -0.14 -1.45 10.02 30.60 0.31 -1.14 16 16 C -0.18 -3.17 10.23 30.60 0.31 -2.86 16 17 N -0.31 -11.10 12.41 -48.60 -0.60 -11.71 16 18 N -0.10 -3.64 12.12 37.02 0.45 -3.19 16 19 C 0.16 5.33 2.80 44.83 0.13 5.45 16 20 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 21 C 0.17 8.33 3.58 86.38 0.31 8.64 16 22 N -0.74 -41.99 5.38 -343.46 -1.85 -43.83 16 23 C -0.24 -15.46 9.99 84.03 0.84 -14.62 16 24 H 0.05 3.47 7.83 -2.91 -0.02 3.44 16 25 C -0.07 -4.19 5.50 84.86 0.47 -3.72 16 26 N -0.96 -61.49 13.06 21.65 0.28 -61.21 16 27 Si 0.97 50.17 29.55 68.60 2.03 52.20 16 28 H -0.28 -14.49 7.11 99.48 0.71 -13.78 16 29 H -0.28 -14.16 7.11 99.48 0.71 -13.45 16 30 H -0.28 -14.17 7.11 99.48 0.71 -13.46 16 31 H 0.07 1.67 5.97 -2.39 -0.01 1.65 16 32 H 0.02 0.77 6.37 -2.39 -0.02 0.76 16 33 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 34 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 35 H 0.07 1.25 8.14 -2.38 -0.02 1.23 16 36 H 0.11 0.39 8.14 -2.39 -0.02 0.37 16 37 H 0.08 0.71 6.33 -2.39 -0.02 0.70 16 38 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 39 H 0.13 0.05 5.93 -2.39 -0.01 0.04 16 40 H 0.16 1.08 7.71 -2.39 -0.02 1.06 16 41 H 0.19 0.39 7.85 -2.39 -0.02 0.37 16 42 H 0.24 1.55 7.46 -2.91 -0.02 1.53 16 43 H 0.12 2.10 8.14 -2.39 -0.02 2.08 16 44 H 0.11 0.85 7.23 -2.39 -0.02 0.83 16 45 H 0.13 0.75 8.14 -2.39 -0.02 0.74 16 46 H 0.11 1.62 8.14 -2.39 -0.02 1.60 16 47 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 48 H 0.01 0.49 5.52 -2.39 -0.01 0.47 16 49 H 0.02 0.98 6.23 -2.38 -0.01 0.97 16 50 H 0.37 21.46 6.33 -92.70 -0.59 20.88 16 51 H 0.25 15.55 8.31 -92.70 -0.77 14.78 16 Total: -1.00 -97.58 395.33 3.64 -93.93 By element: Atomic # 1 Polarization: 21.67 SS G_CDS: 0.37 Total: 22.04 kcal Atomic # 6 Polarization: -7.71 SS G_CDS: 6.05 Total: -1.66 kcal Atomic # 7 Polarization: -138.46 SS G_CDS: -4.77 Total: -143.23 kcal Atomic # 8 Polarization: -23.26 SS G_CDS: -0.03 Total: -23.29 kcal Atomic # 14 Polarization: 50.17 SS G_CDS: 2.03 Total: 52.20 kcal Total: -97.58 3.64 -93.93 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319849883.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 195.833 kcal (2) G-P(sol) polarization free energy of solvation -97.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.934 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds