Wall clock time and date at job start Wed Apr 1 2020 06:25:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 109.47256 * 2 1 4 4 C 1.50705 * 109.47100 * 119.99972 * 2 1 3 5 5 H 1.07994 * 119.99817 * 119.99870 * 4 2 1 6 6 C 1.37875 * 119.99737 * 299.99746 * 4 2 1 7 7 N 1.31517 * 120.00256 * 359.97438 * 6 4 2 8 8 Si 1.86794 * 119.99927 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.47128 * 60.00246 * 8 6 4 10 10 H 1.48499 * 109.47449 * 180.02562 * 8 6 4 11 11 H 1.48499 * 109.47446 * 300.00208 * 8 6 4 12 12 N 1.46894 * 109.47096 * 239.99769 * 2 1 3 13 13 C 1.46904 * 111.00077 * 183.95442 * 12 2 1 14 14 C 1.38586 * 111.00217 * 60.00491 * 12 2 1 15 15 N 1.31211 * 126.47088 * 21.78693 * 14 12 2 16 16 N 1.28528 * 109.86200 * 179.73604 * 15 14 12 17 17 C 1.30294 * 110.04936 * 0.45048 * 16 15 14 18 18 C 1.50700 * 126.34698 * 179.82707 * 17 16 15 19 19 H 1.09002 * 110.28670 * 196.66807 * 18 17 16 20 20 C 1.54478 * 110.24974 * 74.68879 * 18 17 16 21 21 C 1.54633 * 101.76550 * 215.58678 * 20 18 17 22 22 C 1.51279 * 104.19537 * 24.79424 * 21 20 18 23 23 O 1.21282 * 124.94102 * 163.72689 * 22 21 20 24 24 N 1.34418 * 110.11680 * 343.99283 * 22 21 20 25 25 N 1.36447 * 126.47409 * 201.79347 * 14 12 2 26 26 C 1.46499 * 127.13837 * 359.97438 * 25 14 12 27 27 C 1.53006 * 109.47328 * 89.20121 * 26 25 14 28 28 H 1.09002 * 115.54558 * 330.28701 * 27 26 25 29 29 C 1.52999 * 117.49921 * 115.99827 * 27 26 25 30 30 C 1.53001 * 117.50081 * 184.62311 * 27 26 25 31 31 H 1.08996 * 117.50040 * 144.99596 * 30 27 26 32 32 C 1.52999 * 117.49791 * 359.97438 * 30 27 26 33 33 H 1.09010 * 109.46781 * 59.99681 * 1 2 3 34 34 H 1.08987 * 109.47620 * 179.97438 * 1 2 3 35 35 H 1.09001 * 109.46997 * 300.00258 * 1 2 3 36 36 H 0.96996 * 120.00045 * 179.97438 * 7 6 4 37 37 H 1.08999 * 109.47619 * 302.28800 * 13 12 2 38 38 H 1.09002 * 109.47102 * 62.29336 * 13 12 2 39 39 H 1.09000 * 109.47300 * 182.28583 * 13 12 2 40 40 H 1.08994 * 110.97000 * 97.46859 * 20 18 17 41 41 H 1.08997 * 110.96724 * 333.69970 * 20 18 17 42 42 H 1.08998 * 110.48323 * 266.12104 * 21 20 18 43 43 H 1.08997 * 110.48814 * 143.47485 * 21 20 18 44 44 H 0.97006 * 124.34783 * 179.34156 * 24 22 21 45 45 H 1.09000 * 109.47877 * 209.19981 * 26 25 14 46 46 H 1.09006 * 109.47303 * 329.20311 * 26 25 14 47 47 H 1.08996 * 117.49825 * 214.98093 * 29 27 26 48 48 H 1.08996 * 117.49647 * 0.02562 * 29 27 26 49 49 H 1.08999 * 109.47411 * 59.99772 * 32 30 27 50 50 H 1.09005 * 109.47168 * 180.02562 * 32 30 27 51 51 H 1.09011 * 109.46863 * 300.00025 * 32 30 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6992 -0.2393 2.4827 7 7 0.9436 0.8303 2.6034 8 14 2.3213 -1.1202 4.0079 9 1 3.8062 -1.1208 4.0082 10 1 1.8259 -0.4205 5.2204 11 1 1.8257 -2.5201 4.0078 12 7 2.0196 -0.6925 -1.1994 13 6 3.4850 -0.7946 -1.1870 14 6 1.5754 -0.0641 -2.3519 15 7 1.1747 1.1810 -2.4564 16 7 0.8376 1.4306 -3.6713 17 6 0.9928 0.3657 -4.4058 18 6 0.7040 0.2478 -5.8802 19 1 0.6394 -0.8011 -6.1699 20 6 1.8022 0.9619 -6.6989 21 6 0.9884 1.5435 -7.8782 22 6 -0.4159 1.6744 -7.3310 23 8 -1.2966 2.3419 -7.8306 24 7 -0.5438 0.9478 -6.2074 25 7 1.4719 -0.6233 -3.5922 26 6 1.8053 -1.9980 -3.9733 27 6 0.5763 -2.8907 -3.7894 28 1 -0.1133 -2.5849 -3.0026 29 6 -0.0207 -3.5373 -5.0409 30 6 0.7503 -4.3912 -4.0323 31 1 0.1752 -5.0726 -3.4055 32 6 2.1399 -4.8842 -4.4411 33 1 -0.3633 0.5139 -0.8900 34 1 -0.3634 -1.0275 -0.0005 35 1 -0.3633 0.5139 0.8900 36 1 0.7090 1.1615 3.4843 37 1 3.9183 0.2032 -1.1181 38 1 3.8007 -1.3878 -0.3287 39 1 3.8236 -1.2751 -2.1049 40 1 2.5489 0.2513 -7.0532 41 1 2.2678 1.7571 -6.1167 42 1 1.0048 0.8597 -8.7269 43 1 1.3782 2.5198 -8.1660 44 1 -1.3571 0.8916 -5.6816 45 1 2.1175 -2.0202 -5.0174 46 1 2.6169 -2.3629 -3.3436 47 1 -1.1035 -3.6568 -5.0778 48 1 0.4622 -3.3271 -5.9952 49 1 2.8585 -4.6335 -3.6609 50 1 2.1157 -5.9651 -4.5797 51 1 2.4353 -4.4051 -5.3747 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001434624698.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:25:58 Heat of formation + Delta-G solvation = 85.218759 kcal Electronic energy + Delta-G solvation = -32193.809123 eV Core-core repulsion = 28130.950457 eV Total energy + Delta-G solvation = -4062.858666 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.73877 -40.30420 -38.51965 -37.27373 -36.54944 -34.38689 -32.89386 -31.53158 -30.33439 -29.34908 -28.93697 -27.73505 -27.07212 -25.40950 -24.40973 -22.91825 -22.18625 -21.65675 -20.81562 -20.68203 -19.87310 -19.44913 -17.52659 -17.24318 -16.60654 -16.20083 -16.06092 -15.61237 -15.19936 -15.03921 -14.68775 -14.40677 -14.23635 -13.92138 -13.67771 -13.58816 -13.39374 -13.25789 -13.11161 -12.94175 -12.52695 -12.39561 -12.19780 -11.99434 -11.94906 -11.68000 -11.38377 -11.20792 -11.09074 -10.99004 -10.77156 -10.44878 -10.33732 -10.29416 -10.18997 -10.11559 -10.05100 -9.98990 -9.74502 -9.42332 -9.26620 -8.72030 -8.50599 -7.57589 -6.08609 -4.16589 1.93798 2.34772 2.54174 3.11850 3.26183 3.32023 3.32666 3.32842 3.47356 3.96925 4.13586 4.24002 4.32527 4.33010 4.46243 4.47617 4.58492 4.63664 4.73928 4.78149 5.00660 5.03676 5.16081 5.21699 5.24243 5.36153 5.43773 5.48672 5.51452 5.53835 5.59538 5.64820 5.78568 5.79992 5.96574 6.00414 6.02940 6.08048 6.24690 6.41716 6.58753 6.74222 6.87898 6.89173 7.04585 7.12613 7.36616 7.60979 7.68568 7.89982 8.09170 8.18786 8.38375 8.84885 9.19028 9.48266 10.97743 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.011525 B = 0.003408 C = 0.002874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2428.984189 B = 8215.029228 C = 9740.942863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.230 3.770 3 H 0.025 0.975 4 C -0.517 4.517 5 H 0.064 0.936 6 C 0.065 3.935 7 N -0.884 5.884 8 Si 0.900 3.100 9 H -0.277 1.277 10 H -0.287 1.287 11 H -0.277 1.277 12 N -0.461 5.461 13 C 0.044 3.956 14 C 0.394 3.606 15 N -0.314 5.314 16 N -0.264 5.264 17 C 0.125 3.875 18 C 0.235 3.765 19 H 0.095 0.905 20 C -0.124 4.124 21 C -0.154 4.154 22 C 0.525 3.475 23 O -0.534 6.534 24 N -0.710 5.710 25 N -0.473 5.473 26 C 0.147 3.853 27 C -0.164 4.164 28 H 0.115 0.885 29 C -0.177 4.177 30 C -0.138 4.138 31 H 0.108 0.892 32 C -0.127 4.127 33 H 0.018 0.982 34 H 0.025 0.975 35 H 0.089 0.911 36 H 0.264 0.736 37 H 0.033 0.967 38 H 0.094 0.906 39 H 0.043 0.957 40 H 0.094 0.906 41 H 0.093 0.907 42 H 0.106 0.894 43 H 0.106 0.894 44 H 0.415 0.585 45 H 0.088 0.912 46 H 0.103 0.897 47 H 0.095 0.905 48 H 0.094 0.906 49 H 0.064 0.936 50 H 0.062 0.938 51 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.488 -10.117 -19.473 22.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.126 3.874 3 H 0.043 0.957 4 C -0.556 4.556 5 H 0.082 0.918 6 C -0.138 4.138 7 N -0.521 5.521 8 Si 0.727 3.273 9 H -0.202 1.202 10 H -0.212 1.212 11 H -0.202 1.202 12 N -0.187 5.187 13 C -0.103 4.103 14 C 0.039 3.961 15 N -0.158 5.158 16 N -0.105 5.105 17 C -0.142 4.142 18 C 0.126 3.874 19 H 0.113 0.887 20 C -0.163 4.163 21 C -0.194 4.194 22 C 0.311 3.689 23 O -0.411 6.411 24 N -0.365 5.365 25 N -0.169 5.169 26 C 0.024 3.976 27 C -0.183 4.183 28 H 0.133 0.867 29 C -0.213 4.213 30 C -0.157 4.157 31 H 0.126 0.874 32 C -0.184 4.184 33 H 0.037 0.963 34 H 0.044 0.956 35 H 0.108 0.892 36 H 0.074 0.926 37 H 0.052 0.948 38 H 0.113 0.887 39 H 0.061 0.939 40 H 0.112 0.888 41 H 0.112 0.888 42 H 0.124 0.876 43 H 0.124 0.876 44 H 0.254 0.746 45 H 0.106 0.894 46 H 0.121 0.879 47 H 0.113 0.887 48 H 0.113 0.887 49 H 0.083 0.917 50 H 0.081 0.919 51 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 3.529 -8.682 -19.222 21.385 hybrid contribution 0.414 -1.298 1.080 1.739 sum 3.942 -9.980 -18.142 21.078 Atomic orbital electron populations 1.21812 0.97109 0.99000 1.01145 1.19353 0.92889 0.92905 0.82278 0.95678 1.20999 1.32340 1.12784 0.89476 0.91776 1.24898 0.94987 0.94977 0.98969 1.69904 1.35900 1.22471 1.23842 0.86538 0.79069 0.79644 0.82001 1.20221 1.21232 1.20221 1.59231 1.10568 1.49689 0.99188 1.22280 0.85166 1.01178 1.01676 1.23147 0.99591 0.88134 0.85240 1.74899 1.20189 1.10575 1.10133 1.73984 1.16689 1.21846 0.97974 1.24315 1.07532 0.86806 0.95582 1.19579 0.85299 0.97267 0.85277 0.88709 1.22744 0.96625 1.01323 0.95625 1.22365 0.93305 1.04669 0.99071 1.20763 0.90190 0.77584 0.80329 1.90765 1.46608 1.40749 1.62954 1.46092 1.14009 1.48980 1.27438 1.46183 1.50790 1.11338 1.08552 1.21323 0.97323 0.77635 1.01330 1.22676 1.00015 0.94503 1.01124 0.86706 1.23237 1.00223 1.04372 0.93519 1.22350 0.98400 0.92570 1.02383 0.87395 1.21399 0.94571 1.01338 1.01065 0.96268 0.95554 0.89198 0.92629 0.94844 0.88734 0.93856 0.88781 0.88829 0.87599 0.87567 0.74598 0.89424 0.87907 0.88657 0.88724 0.91684 0.91898 0.92580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.35 8.80 37.16 0.33 -3.03 16 2 C 0.23 5.71 1.73 -68.87 -0.12 5.60 16 3 H 0.03 0.72 7.91 -51.93 -0.41 0.31 16 4 C -0.52 -13.43 7.95 -34.44 -0.27 -13.70 16 5 H 0.06 1.60 6.40 -52.49 -0.34 1.26 16 6 C 0.06 1.72 5.30 -17.82 -0.09 1.63 16 7 N -0.88 -24.85 11.32 55.43 0.63 -24.23 16 8 Si 0.90 20.48 29.54 -169.99 -5.02 15.46 16 9 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 10 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 11 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 12 N -0.46 -9.40 4.66 -176.08 -0.82 -10.22 16 13 C 0.04 0.78 9.08 60.07 0.55 1.32 16 14 C 0.39 7.59 6.00 -318.88 -1.91 5.68 16 15 N -0.31 -6.83 10.09 30.31 0.31 -6.53 16 16 N -0.26 -5.01 12.16 32.99 0.40 -4.61 16 17 C 0.13 1.80 6.87 -154.02 -1.06 0.74 16 18 C 0.23 2.29 3.81 -68.16 -0.26 2.03 16 19 H 0.10 0.69 7.40 -51.93 -0.38 0.30 16 20 C -0.12 -0.95 6.68 -25.10 -0.17 -1.12 16 21 C -0.15 -1.18 6.86 -26.74 -0.18 -1.37 16 22 C 0.53 6.35 8.43 -10.86 -0.09 6.26 16 23 O -0.53 -8.70 18.03 5.56 0.10 -8.60 16 24 N -0.71 -8.05 5.84 -53.88 -0.31 -8.37 16 25 N -0.47 -6.86 2.81 -114.08 -0.32 -7.18 16 26 C 0.15 1.53 5.21 -4.04 -0.02 1.50 16 27 C -0.16 -1.71 6.01 -90.62 -0.54 -2.26 16 28 H 0.11 1.60 8.14 -51.93 -0.42 1.17 16 29 C -0.18 -1.38 9.82 -26.73 -0.26 -1.64 16 30 C -0.14 -1.16 6.41 -90.62 -0.58 -1.74 16 31 H 0.11 0.94 8.14 -51.93 -0.42 0.51 16 32 C -0.13 -0.85 9.20 37.16 0.34 -0.51 16 33 H 0.02 0.47 6.28 -51.92 -0.33 0.14 16 34 H 0.03 0.64 8.14 -51.94 -0.42 0.22 16 35 H 0.09 2.49 6.07 -51.93 -0.32 2.17 16 36 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 37 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.09 1.68 6.32 -51.93 -0.33 1.35 16 39 H 0.04 0.60 6.78 -51.93 -0.35 0.25 16 40 H 0.09 0.44 8.14 -51.93 -0.42 0.01 16 41 H 0.09 0.90 7.90 -51.93 -0.41 0.49 16 42 H 0.11 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.11 0.77 8.14 -51.93 -0.42 0.34 16 44 H 0.41 4.95 8.96 -40.82 -0.37 4.59 16 45 H 0.09 0.62 7.27 -51.93 -0.38 0.25 16 46 H 0.10 1.09 6.40 -51.93 -0.33 0.76 16 47 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 48 H 0.09 0.58 7.94 -51.93 -0.41 0.17 16 49 H 0.06 0.46 7.84 -51.93 -0.41 0.06 16 50 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 51 H 0.06 0.31 7.90 -51.92 -0.41 -0.10 16 LS Contribution 406.85 15.07 6.13 6.13 Total: -1.00 -33.50 406.85 -11.37 -44.87 By element: Atomic # 1 Polarization: 11.98 SS G_CDS: -8.11 Total: 3.87 kcal Atomic # 6 Polarization: 3.77 SS G_CDS: -4.35 Total: -0.59 kcal Atomic # 7 Polarization: -61.02 SS G_CDS: -0.12 Total: -61.14 kcal Atomic # 8 Polarization: -8.70 SS G_CDS: 0.10 Total: -8.60 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.02 Total: 15.46 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -33.50 -11.37 -44.87 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001434624698.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.086 kcal (2) G-P(sol) polarization free energy of solvation -33.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.868 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds