Wall clock time and date at job start Wed Apr 1 2020 06:25:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 109.47256 * 2 1 4 4 C 1.50705 * 109.47100 * 119.99972 * 2 1 3 5 5 H 1.07994 * 119.99817 * 119.99870 * 4 2 1 6 6 C 1.37875 * 119.99737 * 299.99746 * 4 2 1 7 7 N 1.31517 * 120.00256 * 359.97438 * 6 4 2 8 8 Si 1.86794 * 119.99927 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.47128 * 60.00246 * 8 6 4 10 10 H 1.48499 * 109.47449 * 180.02562 * 8 6 4 11 11 H 1.48499 * 109.47446 * 300.00208 * 8 6 4 12 12 N 1.46894 * 109.47096 * 239.99769 * 2 1 3 13 13 C 1.46904 * 111.00077 * 183.95442 * 12 2 1 14 14 C 1.38586 * 111.00217 * 60.00491 * 12 2 1 15 15 N 1.31211 * 126.47088 * 21.78693 * 14 12 2 16 16 N 1.28528 * 109.86200 * 179.73604 * 15 14 12 17 17 C 1.30294 * 110.04936 * 0.45048 * 16 15 14 18 18 C 1.50700 * 126.34698 * 179.82707 * 17 16 15 19 19 H 1.09002 * 110.28670 * 196.66807 * 18 17 16 20 20 C 1.54478 * 110.24974 * 74.68879 * 18 17 16 21 21 C 1.54633 * 101.76550 * 215.58678 * 20 18 17 22 22 C 1.51279 * 104.19537 * 24.79424 * 21 20 18 23 23 O 1.21282 * 124.94102 * 163.72689 * 22 21 20 24 24 N 1.34418 * 110.11680 * 343.99283 * 22 21 20 25 25 N 1.36447 * 126.47409 * 201.79347 * 14 12 2 26 26 C 1.46499 * 127.13837 * 359.97438 * 25 14 12 27 27 C 1.53006 * 109.47328 * 89.20121 * 26 25 14 28 28 H 1.09002 * 115.54558 * 330.28701 * 27 26 25 29 29 C 1.52999 * 117.49921 * 115.99827 * 27 26 25 30 30 C 1.53001 * 117.50081 * 184.62311 * 27 26 25 31 31 H 1.08996 * 117.50040 * 144.99596 * 30 27 26 32 32 C 1.52999 * 117.49791 * 359.97438 * 30 27 26 33 33 H 1.09010 * 109.46781 * 59.99681 * 1 2 3 34 34 H 1.08987 * 109.47620 * 179.97438 * 1 2 3 35 35 H 1.09001 * 109.46997 * 300.00258 * 1 2 3 36 36 H 0.96996 * 120.00045 * 179.97438 * 7 6 4 37 37 H 1.08999 * 109.47619 * 302.28800 * 13 12 2 38 38 H 1.09002 * 109.47102 * 62.29336 * 13 12 2 39 39 H 1.09000 * 109.47300 * 182.28583 * 13 12 2 40 40 H 1.08994 * 110.97000 * 97.46859 * 20 18 17 41 41 H 1.08997 * 110.96724 * 333.69970 * 20 18 17 42 42 H 1.08998 * 110.48323 * 266.12104 * 21 20 18 43 43 H 1.08997 * 110.48814 * 143.47485 * 21 20 18 44 44 H 0.97006 * 124.34783 * 179.34156 * 24 22 21 45 45 H 1.09000 * 109.47877 * 209.19981 * 26 25 14 46 46 H 1.09006 * 109.47303 * 329.20311 * 26 25 14 47 47 H 1.08996 * 117.49825 * 214.98093 * 29 27 26 48 48 H 1.08996 * 117.49647 * 0.02562 * 29 27 26 49 49 H 1.08999 * 109.47411 * 59.99772 * 32 30 27 50 50 H 1.09005 * 109.47168 * 180.02562 * 32 30 27 51 51 H 1.09011 * 109.46863 * 300.00025 * 32 30 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6992 -0.2393 2.4827 7 7 0.9436 0.8303 2.6034 8 14 2.3213 -1.1202 4.0079 9 1 3.8062 -1.1208 4.0082 10 1 1.8259 -0.4205 5.2204 11 1 1.8257 -2.5201 4.0078 12 7 2.0196 -0.6925 -1.1994 13 6 3.4850 -0.7946 -1.1870 14 6 1.5754 -0.0641 -2.3519 15 7 1.1747 1.1810 -2.4564 16 7 0.8376 1.4306 -3.6713 17 6 0.9928 0.3657 -4.4058 18 6 0.7040 0.2478 -5.8802 19 1 0.6394 -0.8011 -6.1699 20 6 1.8022 0.9619 -6.6989 21 6 0.9884 1.5435 -7.8782 22 6 -0.4159 1.6744 -7.3310 23 8 -1.2966 2.3419 -7.8306 24 7 -0.5438 0.9478 -6.2074 25 7 1.4719 -0.6233 -3.5922 26 6 1.8053 -1.9980 -3.9733 27 6 0.5763 -2.8907 -3.7894 28 1 -0.1133 -2.5849 -3.0026 29 6 -0.0207 -3.5373 -5.0409 30 6 0.7503 -4.3912 -4.0323 31 1 0.1752 -5.0726 -3.4055 32 6 2.1399 -4.8842 -4.4411 33 1 -0.3633 0.5139 -0.8900 34 1 -0.3634 -1.0275 -0.0005 35 1 -0.3633 0.5139 0.8900 36 1 0.7090 1.1615 3.4843 37 1 3.9183 0.2032 -1.1181 38 1 3.8007 -1.3878 -0.3287 39 1 3.8236 -1.2751 -2.1049 40 1 2.5489 0.2513 -7.0532 41 1 2.2678 1.7571 -6.1167 42 1 1.0048 0.8597 -8.7269 43 1 1.3782 2.5198 -8.1660 44 1 -1.3571 0.8916 -5.6816 45 1 2.1175 -2.0202 -5.0174 46 1 2.6169 -2.3629 -3.3436 47 1 -1.1035 -3.6568 -5.0778 48 1 0.4622 -3.3271 -5.9952 49 1 2.8585 -4.6335 -3.6609 50 1 2.1157 -5.9651 -4.5797 51 1 2.4353 -4.4051 -5.3747 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001434624698.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:25:57 Heat of formation + Delta-G solvation = 63.527754 kcal Electronic energy + Delta-G solvation = -32194.749716 eV Core-core repulsion = 28130.950457 eV Total energy + Delta-G solvation = -4063.799259 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -44.04941 -41.20444 -39.25170 -38.88052 -37.61208 -35.58546 -34.79641 -32.25279 -31.67081 -31.17235 -29.60474 -28.77458 -28.04033 -27.23280 -26.05593 -23.96243 -23.42643 -22.65824 -21.78206 -21.55932 -21.10269 -20.54395 -18.59859 -18.45048 -18.05133 -17.48919 -17.31720 -16.84461 -16.51952 -16.22620 -15.97547 -15.62055 -15.35919 -14.98214 -14.88765 -14.69590 -14.42248 -14.16313 -14.03992 -13.81126 -13.66084 -13.58770 -13.08411 -13.03558 -12.99907 -12.84656 -12.69476 -12.66634 -12.42710 -12.25485 -12.24833 -12.16678 -12.05596 -12.00440 -11.56960 -11.24160 -11.15456 -10.99682 -10.79224 -10.67957 -10.57828 -10.44202 -10.21604 -9.18964 -8.13760 -6.29166 0.70463 1.21995 1.44722 1.46867 1.54403 1.58989 1.80972 2.38145 2.41111 2.78189 2.93406 3.10295 3.17719 3.38730 3.62002 3.62796 3.72027 3.86040 3.89630 4.00759 4.08396 4.11638 4.27841 4.31312 4.45916 4.54049 4.57771 4.59660 4.73942 4.77816 4.85276 4.87995 4.91954 4.95209 4.99954 5.00772 5.03489 5.06019 5.13317 5.16269 5.20965 5.29568 5.39786 5.48541 5.53862 5.63113 5.69559 5.88710 5.95472 6.00167 6.14173 6.59639 6.81235 7.15773 7.40033 7.82256 8.92957 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.011525 B = 0.003408 C = 0.002874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2428.984189 B = 8215.029228 C = 9740.942863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C 0.243 3.757 3 H -0.023 1.023 4 C -0.525 4.525 5 H 0.076 0.924 6 C 0.012 3.988 7 N -0.921 5.921 8 Si 0.969 3.031 9 H -0.264 1.264 10 H -0.290 1.290 11 H -0.268 1.268 12 N -0.458 5.458 13 C 0.046 3.954 14 C 0.374 3.626 15 N -0.368 5.368 16 N -0.314 5.314 17 C 0.159 3.841 18 C 0.232 3.768 19 H 0.140 0.860 20 C -0.116 4.116 21 C -0.140 4.140 22 C 0.515 3.485 23 O -0.587 6.587 24 N -0.715 5.715 25 N -0.459 5.459 26 C 0.141 3.859 27 C -0.187 4.187 28 H 0.068 0.932 29 C -0.156 4.156 30 C -0.134 4.134 31 H 0.096 0.904 32 C -0.125 4.125 33 H 0.013 0.987 34 H 0.025 0.975 35 H 0.062 0.938 36 H 0.262 0.738 37 H 0.014 0.986 38 H 0.091 0.909 39 H 0.086 0.914 40 H 0.143 0.857 41 H 0.069 0.931 42 H 0.145 0.855 43 H 0.111 0.889 44 H 0.406 0.594 45 H 0.138 0.862 46 H 0.103 0.897 47 H 0.090 0.910 48 H 0.128 0.872 49 H 0.059 0.941 50 H 0.069 0.931 51 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.815 -13.446 -22.663 27.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.137 3.863 3 H -0.005 1.005 4 C -0.564 4.564 5 H 0.094 0.906 6 C -0.188 4.188 7 N -0.560 5.560 8 Si 0.794 3.206 9 H -0.189 1.189 10 H -0.215 1.215 11 H -0.193 1.193 12 N -0.183 5.183 13 C -0.101 4.101 14 C 0.017 3.983 15 N -0.212 5.212 16 N -0.154 5.154 17 C -0.111 4.111 18 C 0.124 3.876 19 H 0.157 0.843 20 C -0.154 4.154 21 C -0.179 4.179 22 C 0.303 3.697 23 O -0.467 6.467 24 N -0.368 5.368 25 N -0.154 5.154 26 C 0.020 3.980 27 C -0.207 4.207 28 H 0.086 0.914 29 C -0.192 4.192 30 C -0.153 4.153 31 H 0.114 0.886 32 C -0.182 4.182 33 H 0.032 0.968 34 H 0.044 0.956 35 H 0.080 0.920 36 H 0.071 0.929 37 H 0.033 0.967 38 H 0.110 0.890 39 H 0.105 0.895 40 H 0.161 0.839 41 H 0.088 0.912 42 H 0.162 0.838 43 H 0.129 0.871 44 H 0.244 0.756 45 H 0.156 0.844 46 H 0.121 0.879 47 H 0.109 0.891 48 H 0.146 0.854 49 H 0.078 0.922 50 H 0.088 0.912 51 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 5.892 -12.055 -22.434 26.140 hybrid contribution -0.376 -0.277 1.973 2.027 sum 5.517 -12.332 -20.461 24.519 Atomic orbital electron populations 1.21565 0.97985 0.98192 0.99436 1.18903 0.92082 0.90797 0.84513 1.00488 1.21332 1.32138 1.12914 0.89966 0.90622 1.25808 0.95090 0.95590 1.02281 1.70077 1.37344 1.24188 1.24344 0.85446 0.78980 0.78508 0.77714 1.18923 1.21548 1.19285 1.59114 1.12086 1.48732 0.98324 1.22351 0.83516 1.00450 1.03805 1.22947 1.00723 0.88235 0.86417 1.74755 1.21635 1.12678 1.12103 1.73880 1.19444 1.24346 0.97693 1.25254 1.03476 0.85245 0.97092 1.20183 0.85448 0.99845 0.82116 0.84291 1.22833 0.96518 1.01526 0.94540 1.22415 0.89489 1.06089 0.99952 1.21623 0.91567 0.76357 0.80114 1.90735 1.48732 1.42796 1.64450 1.46283 1.14313 1.48943 1.27219 1.46315 1.49709 1.12793 1.06552 1.21771 0.97207 0.74902 1.04088 1.22452 1.00012 0.96177 1.02037 0.91354 1.23371 1.00280 1.01910 0.93667 1.22432 0.99709 0.90839 1.02270 0.88597 1.21433 0.92863 1.02032 1.01885 0.96814 0.95598 0.91958 0.92857 0.96726 0.89021 0.89534 0.83870 0.91194 0.83757 0.87054 0.75591 0.84445 0.87936 0.89144 0.85397 0.92239 0.91189 0.90281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -6.12 8.80 71.98 0.63 -5.49 16 2 C 0.24 12.74 1.73 44.17 0.08 12.82 16 3 H -0.02 -1.38 7.91 -2.39 -0.02 -1.40 16 4 C -0.53 -27.98 7.95 25.60 0.20 -27.78 16 5 H 0.08 3.77 6.40 -2.91 -0.02 3.75 16 6 C 0.01 0.64 5.30 84.65 0.45 1.09 16 7 N -0.92 -54.16 11.32 21.45 0.24 -53.92 16 8 Si 0.97 42.47 29.54 68.60 2.03 44.49 16 9 H -0.26 -11.01 7.11 99.48 0.71 -10.30 16 10 H -0.29 -12.75 7.11 99.48 0.71 -12.04 16 11 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 12 N -0.46 -19.15 4.66 -711.00 -3.31 -22.46 16 13 C 0.05 1.59 9.08 127.69 1.16 2.75 16 14 C 0.37 14.75 6.00 260.12 1.56 16.31 16 15 N -0.37 -16.89 10.09 -58.01 -0.59 -17.47 16 16 N -0.31 -12.28 12.16 -49.54 -0.60 -12.88 16 17 C 0.16 4.35 6.87 137.64 0.95 5.29 16 18 C 0.23 3.67 3.81 44.70 0.17 3.84 16 19 H 0.14 1.09 7.40 -2.39 -0.02 1.07 16 20 C -0.12 -1.22 6.68 31.65 0.21 -1.00 16 21 C -0.14 -1.57 6.86 30.59 0.21 -1.36 16 22 C 0.51 11.63 8.43 87.90 0.74 12.37 16 23 O -0.59 -19.14 18.03 -3.04 -0.05 -19.20 16 24 N -0.71 -15.12 5.84 -442.96 -2.59 -17.71 16 25 N -0.46 -12.65 2.81 -514.84 -1.45 -14.09 16 26 C 0.14 2.41 5.21 86.38 0.45 2.86 16 27 C -0.19 -3.50 6.01 -10.79 -0.06 -3.57 16 28 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 29 C -0.16 -1.80 9.82 30.60 0.30 -1.50 16 30 C -0.13 -1.85 6.41 -10.79 -0.07 -1.92 16 31 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 32 C -0.13 -1.13 9.20 71.98 0.66 -0.47 16 33 H 0.01 0.71 6.28 -2.38 -0.01 0.69 16 34 H 0.02 1.33 8.14 -2.39 -0.02 1.31 16 35 H 0.06 3.69 6.07 -2.39 -0.01 3.67 16 36 H 0.26 14.72 8.31 -92.71 -0.77 13.95 16 37 H 0.01 0.54 8.14 -2.39 -0.02 0.52 16 38 H 0.09 3.22 6.32 -2.39 -0.02 3.20 16 39 H 0.09 2.23 6.78 -2.39 -0.02 2.21 16 40 H 0.14 0.21 8.14 -2.39 -0.02 0.19 16 41 H 0.07 1.14 7.90 -2.39 -0.02 1.12 16 42 H 0.14 0.61 8.14 -2.39 -0.02 0.59 16 43 H 0.11 1.23 8.14 -2.39 -0.02 1.21 16 44 H 0.41 9.71 8.96 -92.70 -0.83 8.88 16 45 H 0.14 0.99 7.27 -2.39 -0.02 0.98 16 46 H 0.10 1.80 6.40 -2.38 -0.02 1.79 16 47 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 48 H 0.13 0.66 7.94 -2.39 -0.02 0.64 16 49 H 0.06 0.63 7.84 -2.39 -0.02 0.61 16 50 H 0.07 0.56 8.14 -2.38 -0.02 0.54 16 51 H 0.08 0.37 7.90 -2.38 -0.02 0.35 16 Total: -1.00 -82.89 406.85 1.44 -81.45 By element: Atomic # 1 Polarization: 17.42 SS G_CDS: 0.12 Total: 17.54 kcal Atomic # 6 Polarization: 6.61 SS G_CDS: 7.64 Total: 14.25 kcal Atomic # 7 Polarization: -130.25 SS G_CDS: -8.29 Total: -138.53 kcal Atomic # 8 Polarization: -19.14 SS G_CDS: -0.05 Total: -19.20 kcal Atomic # 14 Polarization: 42.47 SS G_CDS: 2.03 Total: 44.49 kcal Total: -82.89 1.44 -81.45 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001434624698.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.975 kcal (2) G-P(sol) polarization free energy of solvation -82.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.448 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds