Wall clock time and date at job start Wed Apr 1 2020 06:28:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.47032 * 2 1 4 4 C 1.50699 * 109.46916 * 120.00333 * 2 1 3 5 5 H 1.07995 * 119.99985 * 95.57833 * 4 2 1 6 6 C 1.37879 * 119.99770 * 275.57380 * 4 2 1 7 7 N 1.31511 * 120.00232 * 358.67873 * 6 4 2 8 8 Si 1.86801 * 119.99773 * 178.40293 * 6 4 2 9 9 H 1.48505 * 109.47207 * 0.02562 * 8 6 4 10 10 H 1.48504 * 109.47080 * 119.99948 * 8 6 4 11 11 H 1.48503 * 109.47181 * 240.00235 * 8 6 4 12 12 N 1.46906 * 109.47058 * 240.00237 * 2 1 3 13 13 C 1.46899 * 110.99591 * 183.95330 * 12 2 1 14 14 C 1.37781 * 111.00072 * 60.00381 * 12 2 1 15 15 N 1.31990 * 126.27627 * 52.46685 * 14 12 2 16 16 N 1.28550 * 110.00998 * 180.02562 * 15 14 12 17 17 C 1.31601 * 109.69033 * 359.97438 * 16 15 14 18 18 C 1.46962 * 126.49508 * 180.02562 * 17 16 15 19 19 O 1.21667 * 119.99814 * 174.71160 * 18 17 16 20 20 N 1.34768 * 119.99728 * 354.71446 * 18 17 16 21 21 C 1.47024 * 125.65343 * 359.68842 * 20 18 17 22 22 C 1.54318 * 107.27657 * 180.96885 * 21 20 18 23 23 C 1.55151 * 102.86369 * 22.52711 * 22 21 20 24 24 C 1.47429 * 125.64521 * 180.02562 * 20 18 17 25 25 N 1.35354 * 126.27056 * 232.16144 * 14 12 2 26 26 C 1.46505 * 127.08289 * 359.97438 * 25 14 12 27 27 H 1.08995 * 115.55178 * 199.01209 * 26 25 14 28 28 C 1.52999 * 117.49550 * 53.34014 * 26 25 14 29 29 C 1.52993 * 117.49824 * 344.72036 * 26 25 14 30 30 H 1.09006 * 117.50159 * 359.97438 * 29 26 25 31 31 C 1.52999 * 117.50011 * 214.98099 * 29 26 25 32 32 H 1.08995 * 109.47724 * 295.98556 * 1 2 3 33 33 H 1.09004 * 109.47203 * 55.98530 * 1 2 3 34 34 H 1.09002 * 109.47301 * 175.98170 * 1 2 3 35 35 H 0.96996 * 119.99538 * 4.17531 * 7 6 4 36 36 H 1.08998 * 109.47232 * 65.91769 * 13 12 2 37 37 H 1.09007 * 109.46639 * 185.91396 * 13 12 2 38 38 H 1.08997 * 109.47756 * 305.91476 * 13 12 2 39 39 H 1.08997 * 109.88488 * 300.51804 * 21 20 18 40 40 H 1.09006 * 109.87654 * 61.68236 * 21 20 18 41 41 H 1.08999 * 110.92334 * 264.11539 * 22 21 20 42 42 H 1.08997 * 110.58944 * 140.79154 * 22 21 20 43 43 H 1.08993 * 111.00699 * 206.22433 * 23 22 21 44 44 H 1.09005 * 111.03487 * 82.39051 * 23 22 21 45 45 H 1.09002 * 110.36614 * 274.67042 * 24 20 18 46 46 H 1.09003 * 110.37001 * 36.88387 * 24 20 18 47 47 H 1.08995 * 117.50469 * 0.02562 * 28 26 25 48 48 H 1.09006 * 117.49429 * 145.01926 * 28 26 25 49 49 H 1.09001 * 109.47622 * 59.99714 * 31 29 26 50 50 H 1.09005 * 109.47436 * 179.97438 * 31 29 26 51 51 H 1.09006 * 109.46890 * 299.99551 * 31 29 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.2979 -1.7560 1.1796 6 6 2.1527 -0.0256 2.4210 7 7 1.8540 1.2539 2.4768 8 14 2.7328 -0.9171 3.9567 9 1 2.9969 -2.3419 3.6320 10 1 3.9802 -0.2840 4.4551 11 1 1.6829 -0.8339 5.0037 12 7 2.0197 -0.6925 -1.1995 13 6 3.4850 -0.7945 -1.1871 14 6 1.5779 -0.0676 -2.3453 15 7 1.7053 1.2139 -2.6347 16 7 1.1814 1.4598 -3.7825 17 6 0.6900 0.3506 -4.2925 18 6 0.0105 0.2103 -5.5880 19 8 -0.3139 -0.8918 -5.9885 20 7 -0.2531 1.3024 -6.3324 21 6 0.0764 2.6880 -5.9677 22 6 -0.4346 3.5955 -7.1064 23 6 -1.5313 2.7257 -7.7756 24 6 -0.9259 1.3060 -7.6442 25 7 0.9389 -0.6565 -3.3830 26 6 0.5822 -2.0716 -3.5125 27 1 0.3705 -2.4122 -4.5260 28 6 -0.2175 -2.7056 -2.3726 29 6 1.2587 -3.0606 -2.5612 30 1 1.9696 -2.6585 -1.8392 31 6 1.5868 -4.4524 -3.1053 32 1 -0.3634 0.4502 0.9237 33 1 -0.3634 0.5749 -0.8519 34 1 -0.3634 -1.0251 -0.0720 35 1 1.4916 1.7017 1.6964 36 1 3.7973 -1.4405 -0.3666 37 1 3.8279 -1.2159 -2.1321 38 1 3.9172 0.1972 -1.0534 39 1 -0.4157 2.9520 -5.0316 40 1 1.1560 2.7976 -5.8651 41 1 0.3641 3.8201 -7.8133 42 1 -0.8629 4.5129 -6.7026 43 1 -1.6624 2.9993 -8.8224 44 1 -2.4742 2.7997 -7.2336 45 1 -0.2043 1.1264 -8.4411 46 1 -1.7130 0.5523 -7.6690 47 1 -0.4786 -2.0700 -1.5266 48 1 -0.9551 -3.4637 -2.6363 49 1 2.2641 -4.3603 -3.9544 50 1 2.0627 -5.0451 -2.3240 51 1 0.6677 -4.9434 -3.4253 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001434627930.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:28:05 Heat of formation + Delta-G solvation = 92.586948 kcal Electronic energy + Delta-G solvation = -32583.667080 eV Core-core repulsion = 28521.127922 eV Total energy + Delta-G solvation = -4062.539158 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.80254 -39.96280 -38.06373 -37.57355 -37.03208 -33.27672 -32.89352 -32.13335 -29.99765 -29.58871 -28.90228 -28.22285 -25.71522 -24.70045 -24.46241 -23.38613 -22.66502 -21.68013 -21.25172 -20.60391 -19.64685 -19.44739 -17.48950 -16.90556 -16.78600 -16.59652 -16.09827 -15.62009 -15.46987 -14.65884 -14.27370 -13.98891 -13.93070 -13.74288 -13.73469 -13.56483 -13.36125 -13.07585 -12.89751 -12.63334 -12.51605 -12.22702 -11.78842 -11.69242 -11.56344 -11.55566 -11.48988 -11.26532 -11.09374 -11.01607 -10.98029 -10.82414 -10.76943 -10.66380 -10.40207 -10.19384 -10.16477 -9.89483 -9.33194 -8.95613 -8.76669 -8.73460 -8.53942 -7.89005 -6.46908 -4.21778 1.25676 2.09288 2.60508 2.96600 3.28765 3.38806 3.41504 3.54744 3.83066 4.02697 4.19258 4.34554 4.44038 4.46221 4.64813 4.72056 4.85729 5.02242 5.06677 5.10474 5.23800 5.26720 5.36948 5.39961 5.46667 5.47878 5.57446 5.64398 5.71555 5.76579 5.78651 5.82214 5.88669 5.92295 5.96868 6.11669 6.14720 6.17765 6.24908 6.36285 6.48680 6.53706 6.56569 6.69355 6.79903 6.98503 7.18317 7.21660 7.49248 7.68102 7.84138 8.15701 8.39955 8.72124 8.81324 9.51103 10.90576 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.014274 B = 0.003371 C = 0.002911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1961.107663 B = 8305.106792 C = 9615.704684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.207 3.793 3 H 0.029 0.971 4 C -0.590 4.590 5 H 0.061 0.939 6 C 0.025 3.975 7 N -0.905 5.905 8 Si 1.076 2.924 9 H -0.287 1.287 10 H -0.287 1.287 11 H -0.287 1.287 12 N -0.467 5.467 13 C 0.051 3.949 14 C 0.399 3.601 15 N -0.314 5.314 16 N -0.233 5.233 17 C 0.099 3.901 18 C 0.633 3.367 19 O -0.539 6.539 20 N -0.599 5.599 21 C 0.105 3.895 22 C -0.133 4.133 23 C -0.134 4.134 24 C 0.109 3.891 25 N -0.403 5.403 26 C 0.049 3.951 27 H 0.153 0.847 28 C -0.167 4.167 29 C -0.144 4.144 30 H 0.150 0.850 31 C -0.121 4.121 32 H 0.059 0.941 33 H 0.012 0.988 34 H 0.047 0.953 35 H 0.273 0.727 36 H 0.094 0.906 37 H 0.045 0.955 38 H 0.038 0.962 39 H 0.079 0.921 40 H 0.082 0.918 41 H 0.077 0.923 42 H 0.084 0.916 43 H 0.086 0.914 44 H 0.077 0.923 45 H 0.072 0.928 46 H 0.081 0.919 47 H 0.112 0.888 48 H 0.103 0.897 49 H 0.058 0.942 50 H 0.067 0.933 51 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.093 -2.490 -18.427 19.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.103 3.897 3 H 0.047 0.953 4 C -0.629 4.629 5 H 0.079 0.921 6 C -0.181 4.181 7 N -0.540 5.540 8 Si 0.904 3.096 9 H -0.213 1.213 10 H -0.213 1.213 11 H -0.214 1.214 12 N -0.194 5.194 13 C -0.096 4.096 14 C 0.044 3.956 15 N -0.163 5.163 16 N -0.083 5.083 17 C -0.166 4.166 18 C 0.419 3.581 19 O -0.416 6.416 20 N -0.333 5.333 21 C -0.018 4.018 22 C -0.171 4.171 23 C -0.172 4.172 24 C -0.013 4.013 25 N -0.092 5.092 26 C -0.055 4.055 27 H 0.171 0.829 28 C -0.205 4.205 29 C -0.162 4.162 30 H 0.167 0.833 31 C -0.178 4.178 32 H 0.078 0.922 33 H 0.031 0.969 34 H 0.065 0.935 35 H 0.084 0.916 36 H 0.113 0.887 37 H 0.063 0.937 38 H 0.057 0.943 39 H 0.097 0.903 40 H 0.100 0.900 41 H 0.096 0.904 42 H 0.103 0.897 43 H 0.104 0.896 44 H 0.096 0.904 45 H 0.090 0.910 46 H 0.099 0.901 47 H 0.130 0.870 48 H 0.121 0.879 49 H 0.077 0.923 50 H 0.086 0.914 51 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -3.701 -2.007 -16.895 17.411 hybrid contribution -0.590 -0.664 -1.661 1.884 sum -4.291 -2.671 -18.556 19.232 Atomic orbital electron populations 1.21984 0.98449 0.99527 0.99165 1.19636 0.91497 0.93901 0.84705 0.95321 1.21788 1.48959 0.98496 0.93657 0.92052 1.25837 0.94994 0.95828 1.01471 1.70715 1.39820 1.09524 1.33950 0.83446 0.76688 0.74614 0.74871 1.21332 1.21290 1.21363 1.59294 1.11938 1.49878 0.98326 1.22197 0.84095 1.01982 1.01281 1.22818 0.95192 0.87781 0.89796 1.75056 1.21047 1.12077 1.08077 1.74478 1.09325 1.20747 1.03758 1.23513 1.10772 0.86088 0.96237 1.15682 0.78162 0.83397 0.80880 1.90788 1.54091 1.24763 1.71911 1.48000 1.58409 1.06809 1.20093 1.22199 1.02039 0.79251 0.98278 1.22697 0.98586 0.98350 0.97502 1.22804 0.98758 0.93832 1.01828 1.22283 0.96748 0.98272 0.83998 1.45539 1.40545 1.08691 1.14418 1.22453 1.08004 0.76282 0.98800 0.82945 1.23686 0.94827 1.02766 0.99227 1.23317 0.97654 0.94694 1.00574 0.83284 1.21404 1.01499 0.94017 1.00913 0.92214 0.96937 0.93453 0.91584 0.88704 0.93661 0.94280 0.90301 0.89957 0.90419 0.89709 0.89586 0.90412 0.91017 0.90090 0.87008 0.87855 0.92289 0.91362 0.92579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.08 8.67 37.16 0.32 -2.76 16 2 C 0.21 4.98 1.59 -68.86 -0.11 4.87 16 3 H 0.03 0.79 6.65 -51.93 -0.35 0.45 16 4 C -0.59 -15.11 7.20 -34.44 -0.25 -15.36 16 5 H 0.06 1.56 7.45 -52.49 -0.39 1.17 16 6 C 0.02 0.66 5.46 -17.82 -0.10 0.56 16 7 N -0.91 -26.11 13.62 55.43 0.75 -25.36 16 8 Si 1.08 23.90 29.90 -169.99 -5.08 18.82 16 9 H -0.29 -6.03 7.11 56.52 0.40 -5.63 16 10 H -0.29 -6.32 7.11 56.52 0.40 -5.92 16 11 H -0.29 -6.36 7.11 56.52 0.40 -5.96 16 12 N -0.47 -9.71 2.30 -176.46 -0.41 -10.11 16 13 C 0.05 0.99 8.26 60.06 0.50 1.49 16 14 C 0.40 8.21 4.82 -320.57 -1.55 6.67 16 15 N -0.31 -6.85 11.96 30.07 0.36 -6.49 16 16 N -0.23 -4.55 9.77 32.51 0.32 -4.23 16 17 C 0.10 1.82 7.74 -153.50 -1.19 0.63 16 18 C 0.63 10.35 7.83 -12.73 -0.10 10.25 16 19 O -0.54 -9.45 15.12 5.22 0.08 -9.37 16 20 N -0.60 -7.78 3.33 -171.96 -0.57 -8.35 16 21 C 0.10 1.19 5.53 -3.07 -0.02 1.17 16 22 C -0.13 -0.99 6.95 -24.90 -0.17 -1.16 16 23 C -0.13 -0.91 7.08 -24.60 -0.17 -1.09 16 24 C 0.11 1.03 6.91 -2.54 -0.02 1.01 16 25 N -0.40 -7.53 3.16 -108.07 -0.34 -7.87 16 26 C 0.05 0.79 6.22 -67.93 -0.42 0.36 16 27 H 0.15 2.41 6.39 -51.93 -0.33 2.08 16 28 C -0.17 -2.55 9.94 -26.73 -0.27 -2.81 16 29 C -0.14 -2.13 5.71 -90.63 -0.52 -2.65 16 30 H 0.15 2.55 4.92 -51.93 -0.26 2.30 16 31 C -0.12 -1.39 10.19 37.16 0.38 -1.01 16 32 H 0.06 1.46 8.02 -51.93 -0.42 1.05 16 33 H 0.01 0.27 7.37 -51.93 -0.38 -0.11 16 34 H 0.05 1.03 6.01 -51.93 -0.31 0.72 16 35 H 0.27 7.99 6.55 -40.82 -0.27 7.73 16 36 H 0.09 1.81 6.99 -51.93 -0.36 1.45 16 37 H 0.04 0.77 8.05 -51.92 -0.42 0.35 16 38 H 0.04 0.81 8.12 -51.93 -0.42 0.38 16 39 H 0.08 1.01 7.78 -51.93 -0.40 0.60 16 40 H 0.08 1.01 7.65 -51.93 -0.40 0.62 16 41 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.09 0.41 8.14 -51.93 -0.42 -0.02 16 44 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 45 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 46 H 0.08 0.80 8.03 -51.93 -0.42 0.38 16 47 H 0.11 1.98 5.71 -51.93 -0.30 1.69 16 48 H 0.10 1.31 8.05 -51.93 -0.42 0.89 16 49 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 50 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 51 H 0.06 0.57 7.90 -51.93 -0.41 0.16 16 LS Contribution 399.22 15.07 6.02 6.02 Total: -1.00 -30.81 399.22 -10.56 -41.36 By element: Atomic # 1 Polarization: 13.40 SS G_CDS: -8.00 Total: 5.40 kcal Atomic # 6 Polarization: 3.86 SS G_CDS: -3.68 Total: 0.18 kcal Atomic # 7 Polarization: -62.52 SS G_CDS: 0.11 Total: -62.40 kcal Atomic # 8 Polarization: -9.45 SS G_CDS: 0.08 Total: -9.37 kcal Atomic # 14 Polarization: 23.90 SS G_CDS: -5.08 Total: 18.82 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -30.81 -10.56 -41.36 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001434627930.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.951 kcal (2) G-P(sol) polarization free energy of solvation -30.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.364 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds