Wall clock time and date at job start Wed Apr 1 2020 06:28:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.47032 * 2 1 4 4 C 1.50699 * 109.46916 * 120.00333 * 2 1 3 5 5 H 1.07995 * 119.99985 * 95.57833 * 4 2 1 6 6 C 1.37879 * 119.99770 * 275.57380 * 4 2 1 7 7 N 1.31511 * 120.00232 * 358.67873 * 6 4 2 8 8 Si 1.86801 * 119.99773 * 178.40293 * 6 4 2 9 9 H 1.48505 * 109.47207 * 0.02562 * 8 6 4 10 10 H 1.48504 * 109.47080 * 119.99948 * 8 6 4 11 11 H 1.48503 * 109.47181 * 240.00235 * 8 6 4 12 12 N 1.46906 * 109.47058 * 240.00237 * 2 1 3 13 13 C 1.46899 * 110.99591 * 183.95330 * 12 2 1 14 14 C 1.37781 * 111.00072 * 60.00381 * 12 2 1 15 15 N 1.31990 * 126.27627 * 52.46685 * 14 12 2 16 16 N 1.28550 * 110.00998 * 180.02562 * 15 14 12 17 17 C 1.31601 * 109.69033 * 359.97438 * 16 15 14 18 18 C 1.46962 * 126.49508 * 180.02562 * 17 16 15 19 19 O 1.21667 * 119.99814 * 174.71160 * 18 17 16 20 20 N 1.34768 * 119.99728 * 354.71446 * 18 17 16 21 21 C 1.47024 * 125.65343 * 359.68842 * 20 18 17 22 22 C 1.54318 * 107.27657 * 180.96885 * 21 20 18 23 23 C 1.55151 * 102.86369 * 22.52711 * 22 21 20 24 24 C 1.47429 * 125.64521 * 180.02562 * 20 18 17 25 25 N 1.35354 * 126.27056 * 232.16144 * 14 12 2 26 26 C 1.46505 * 127.08289 * 359.97438 * 25 14 12 27 27 H 1.08995 * 115.55178 * 199.01209 * 26 25 14 28 28 C 1.52999 * 117.49550 * 53.34014 * 26 25 14 29 29 C 1.52993 * 117.49824 * 344.72036 * 26 25 14 30 30 H 1.09006 * 117.50159 * 359.97438 * 29 26 25 31 31 C 1.52999 * 117.50011 * 214.98099 * 29 26 25 32 32 H 1.08995 * 109.47724 * 295.98556 * 1 2 3 33 33 H 1.09004 * 109.47203 * 55.98530 * 1 2 3 34 34 H 1.09002 * 109.47301 * 175.98170 * 1 2 3 35 35 H 0.96996 * 119.99538 * 4.17531 * 7 6 4 36 36 H 1.08998 * 109.47232 * 65.91769 * 13 12 2 37 37 H 1.09007 * 109.46639 * 185.91396 * 13 12 2 38 38 H 1.08997 * 109.47756 * 305.91476 * 13 12 2 39 39 H 1.08997 * 109.88488 * 300.51804 * 21 20 18 40 40 H 1.09006 * 109.87654 * 61.68236 * 21 20 18 41 41 H 1.08999 * 110.92334 * 264.11539 * 22 21 20 42 42 H 1.08997 * 110.58944 * 140.79154 * 22 21 20 43 43 H 1.08993 * 111.00699 * 206.22433 * 23 22 21 44 44 H 1.09005 * 111.03487 * 82.39051 * 23 22 21 45 45 H 1.09002 * 110.36614 * 274.67042 * 24 20 18 46 46 H 1.09003 * 110.37001 * 36.88387 * 24 20 18 47 47 H 1.08995 * 117.50469 * 0.02562 * 28 26 25 48 48 H 1.09006 * 117.49429 * 145.01926 * 28 26 25 49 49 H 1.09001 * 109.47622 * 59.99714 * 31 29 26 50 50 H 1.09005 * 109.47436 * 179.97438 * 31 29 26 51 51 H 1.09006 * 109.46890 * 299.99551 * 31 29 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.2979 -1.7560 1.1796 6 6 2.1527 -0.0256 2.4210 7 7 1.8540 1.2539 2.4768 8 14 2.7328 -0.9171 3.9567 9 1 2.9969 -2.3419 3.6320 10 1 3.9802 -0.2840 4.4551 11 1 1.6829 -0.8339 5.0037 12 7 2.0197 -0.6925 -1.1995 13 6 3.4850 -0.7945 -1.1871 14 6 1.5779 -0.0676 -2.3453 15 7 1.7053 1.2139 -2.6347 16 7 1.1814 1.4598 -3.7825 17 6 0.6900 0.3506 -4.2925 18 6 0.0105 0.2103 -5.5880 19 8 -0.3139 -0.8918 -5.9885 20 7 -0.2531 1.3024 -6.3324 21 6 0.0764 2.6880 -5.9677 22 6 -0.4346 3.5955 -7.1064 23 6 -1.5313 2.7257 -7.7756 24 6 -0.9259 1.3060 -7.6442 25 7 0.9389 -0.6565 -3.3830 26 6 0.5822 -2.0716 -3.5125 27 1 0.3705 -2.4122 -4.5260 28 6 -0.2175 -2.7056 -2.3726 29 6 1.2587 -3.0606 -2.5612 30 1 1.9696 -2.6585 -1.8392 31 6 1.5868 -4.4524 -3.1053 32 1 -0.3634 0.4502 0.9237 33 1 -0.3634 0.5749 -0.8519 34 1 -0.3634 -1.0251 -0.0720 35 1 1.4916 1.7017 1.6964 36 1 3.7973 -1.4405 -0.3666 37 1 3.8279 -1.2159 -2.1321 38 1 3.9172 0.1972 -1.0534 39 1 -0.4157 2.9520 -5.0316 40 1 1.1560 2.7976 -5.8651 41 1 0.3641 3.8201 -7.8133 42 1 -0.8629 4.5129 -6.7026 43 1 -1.6624 2.9993 -8.8224 44 1 -2.4742 2.7997 -7.2336 45 1 -0.2043 1.1264 -8.4411 46 1 -1.7130 0.5523 -7.6690 47 1 -0.4786 -2.0700 -1.5266 48 1 -0.9551 -3.4637 -2.6363 49 1 2.2641 -4.3603 -3.9544 50 1 2.0627 -5.0451 -2.3240 51 1 0.6677 -4.9434 -3.4253 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001434627930.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:28:04 Heat of formation + Delta-G solvation = 76.995239 kcal Electronic energy + Delta-G solvation = -32584.343187 eV Core-core repulsion = 28521.127922 eV Total energy + Delta-G solvation = -4063.215265 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -44.33254 -41.08064 -39.48208 -38.87419 -38.37701 -35.17069 -34.37769 -33.17012 -31.65013 -31.12693 -29.87033 -29.27511 -27.39223 -26.46237 -25.91073 -24.83743 -23.98463 -23.10239 -22.13094 -21.92044 -20.99252 -20.78588 -18.95609 -18.56556 -18.00734 -17.88171 -17.62404 -17.08224 -16.78418 -16.14642 -15.70505 -15.50749 -15.33818 -15.23366 -14.83053 -14.57716 -14.41630 -14.27705 -14.04145 -13.91568 -13.65158 -13.42812 -13.41938 -13.30255 -13.15793 -12.93325 -12.78941 -12.63840 -12.47684 -12.36145 -12.28965 -12.18399 -12.09003 -12.03866 -11.86776 -11.61737 -11.56272 -11.08883 -10.72572 -10.66026 -10.60029 -10.44796 -9.89425 -9.67971 -8.61785 -6.36643 -0.17799 0.72711 1.07660 1.58653 1.66116 1.78285 1.82299 1.87473 2.52289 2.59675 2.69727 2.85213 3.21208 3.38066 3.57768 3.64814 3.68664 3.76610 3.80337 3.87174 4.04533 4.26117 4.28442 4.35324 4.38989 4.41596 4.46294 4.49714 4.51027 4.62086 4.65359 4.70871 4.83514 4.85829 4.87340 4.90248 4.91052 4.95811 5.00689 5.04172 5.09919 5.15879 5.19617 5.21651 5.34036 5.43687 5.45970 5.61610 5.80622 6.04555 6.20621 6.36686 6.56637 6.61695 7.25329 7.45115 8.75231 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.014274 B = 0.003371 C = 0.002911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1961.107663 B = 8305.106792 C = 9615.704684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C 0.216 3.784 3 H -0.013 1.013 4 C -0.585 4.585 5 H 0.067 0.933 6 C -0.024 4.024 7 N -0.935 5.935 8 Si 1.122 2.878 9 H -0.263 1.263 10 H -0.284 1.284 11 H -0.286 1.286 12 N -0.454 5.454 13 C 0.055 3.945 14 C 0.386 3.614 15 N -0.349 5.349 16 N -0.242 5.242 17 C 0.104 3.896 18 C 0.625 3.375 19 O -0.554 6.554 20 N -0.593 5.593 21 C 0.099 3.901 22 C -0.123 4.123 23 C -0.122 4.122 24 C 0.100 3.900 25 N -0.401 5.401 26 C 0.033 3.967 27 H 0.161 0.839 28 C -0.164 4.164 29 C -0.134 4.134 30 H 0.127 0.873 31 C -0.115 4.115 32 H 0.039 0.961 33 H 0.006 0.994 34 H 0.060 0.940 35 H 0.256 0.744 36 H 0.098 0.902 37 H 0.069 0.931 38 H 0.017 0.983 39 H 0.059 0.941 40 H 0.069 0.931 41 H 0.094 0.906 42 H 0.098 0.902 43 H 0.118 0.882 44 H 0.076 0.924 45 H 0.087 0.913 46 H 0.078 0.922 47 H 0.084 0.916 48 H 0.134 0.866 49 H 0.066 0.934 50 H 0.078 0.922 51 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.580 -4.233 -20.425 21.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.110 3.890 3 H 0.005 0.995 4 C -0.623 4.623 5 H 0.085 0.915 6 C -0.223 4.223 7 N -0.572 5.572 8 Si 0.944 3.056 9 H -0.187 1.187 10 H -0.210 1.210 11 H -0.212 1.212 12 N -0.180 5.180 13 C -0.091 4.091 14 C 0.030 3.970 15 N -0.198 5.198 16 N -0.090 5.090 17 C -0.162 4.162 18 C 0.410 3.590 19 O -0.432 6.432 20 N -0.325 5.325 21 C -0.023 4.023 22 C -0.161 4.161 23 C -0.160 4.160 24 C -0.021 4.021 25 N -0.089 5.089 26 C -0.070 4.070 27 H 0.178 0.822 28 C -0.201 4.201 29 C -0.153 4.153 30 H 0.145 0.855 31 C -0.172 4.172 32 H 0.058 0.942 33 H 0.025 0.975 34 H 0.079 0.921 35 H 0.066 0.934 36 H 0.116 0.884 37 H 0.088 0.912 38 H 0.036 0.964 39 H 0.078 0.922 40 H 0.087 0.913 41 H 0.113 0.887 42 H 0.117 0.883 43 H 0.136 0.864 44 H 0.095 0.905 45 H 0.105 0.895 46 H 0.096 0.904 47 H 0.103 0.897 48 H 0.152 0.848 49 H 0.085 0.915 50 H 0.097 0.903 51 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -4.196 -3.742 -18.945 19.761 hybrid contribution -0.475 -0.086 -1.196 1.289 sum -4.671 -3.828 -20.140 21.026 Atomic orbital electron populations 1.21771 0.97875 0.99947 0.97777 1.19352 0.91780 0.91837 0.86004 0.99477 1.21997 1.47733 0.98610 0.93991 0.91473 1.27234 0.94677 0.95652 1.04774 1.70847 1.42161 1.10895 1.33270 0.82869 0.76258 0.74856 0.71644 1.18702 1.21038 1.21170 1.59220 1.12588 1.48753 0.97451 1.22207 0.83258 1.00907 1.02764 1.22683 0.96277 0.87757 0.90273 1.74978 1.22306 1.13195 1.09303 1.74436 1.09998 1.21371 1.03244 1.24168 1.09575 0.85645 0.96856 1.15611 0.78636 0.84237 0.80527 1.90764 1.55014 1.25385 1.72044 1.48216 1.57038 1.06491 1.20742 1.22316 1.01244 0.79333 0.99450 1.22704 0.99300 0.97876 0.96182 1.22822 0.98039 0.91432 1.03688 1.22637 0.96956 1.00160 0.82315 1.45702 1.39722 1.09797 1.13713 1.22745 1.09526 0.75130 0.99574 0.82210 1.23711 0.96016 1.02774 0.97630 1.23338 0.96723 0.95933 0.99273 0.85509 1.21415 1.02648 0.91750 1.01375 0.94197 0.97498 0.92085 0.93415 0.88363 0.91187 0.96433 0.92248 0.91283 0.88725 0.88310 0.86376 0.90479 0.89480 0.90399 0.89723 0.84821 0.91512 0.90346 0.90863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.56 8.67 71.98 0.62 -4.93 16 2 C 0.22 10.80 1.59 44.17 0.07 10.87 16 3 H -0.01 -0.73 6.65 -2.39 -0.02 -0.75 16 4 C -0.58 -30.35 7.20 25.60 0.18 -30.16 16 5 H 0.07 3.37 7.45 -2.91 -0.02 3.35 16 6 C -0.02 -1.31 5.46 84.66 0.46 -0.85 16 7 N -0.93 -55.86 13.62 21.45 0.29 -55.56 16 8 Si 1.12 47.86 29.90 68.60 2.05 49.91 16 9 H -0.26 -10.08 7.11 99.48 0.71 -9.37 16 10 H -0.28 -11.98 7.11 99.48 0.71 -11.27 16 11 H -0.29 -12.06 7.11 99.48 0.71 -11.35 16 12 N -0.45 -19.31 2.30 -712.21 -1.63 -20.94 16 13 C 0.06 2.18 8.26 127.69 1.05 3.23 16 14 C 0.39 16.37 4.82 260.70 1.26 17.63 16 15 N -0.35 -15.97 11.96 -58.77 -0.70 -16.67 16 16 N -0.24 -9.80 9.77 -51.05 -0.50 -10.30 16 17 C 0.10 3.91 7.74 135.72 1.05 4.96 16 18 C 0.63 20.33 7.83 86.53 0.68 21.01 16 19 O -0.55 -19.00 15.12 -4.24 -0.06 -19.07 16 20 N -0.59 -14.94 3.33 -816.20 -2.72 -17.65 16 21 C 0.10 2.21 5.53 86.73 0.48 2.69 16 22 C -0.12 -1.52 6.95 31.78 0.22 -1.30 16 23 C -0.12 -1.28 7.08 31.98 0.23 -1.05 16 24 C 0.10 1.67 6.91 86.85 0.60 2.27 16 25 N -0.40 -15.15 3.16 -495.81 -1.56 -16.71 16 26 C 0.03 1.04 6.22 44.99 0.28 1.32 16 27 H 0.16 4.82 6.39 -2.39 -0.02 4.81 16 28 C -0.16 -4.76 9.94 30.59 0.30 -4.46 16 29 C -0.13 -3.75 5.71 -10.80 -0.06 -3.82 16 30 H 0.13 4.22 4.92 -2.38 -0.01 4.21 16 31 C -0.11 -2.29 10.19 71.98 0.73 -1.56 16 32 H 0.04 2.03 8.02 -2.39 -0.02 2.01 16 33 H 0.01 0.29 7.37 -2.38 -0.02 0.28 16 34 H 0.06 2.72 6.01 -2.39 -0.01 2.71 16 35 H 0.26 15.85 6.55 -92.71 -0.61 15.24 16 36 H 0.10 3.75 6.99 -2.39 -0.02 3.73 16 37 H 0.07 2.37 8.05 -2.38 -0.02 2.35 16 38 H 0.02 0.74 8.12 -2.39 -0.02 0.72 16 39 H 0.06 1.56 7.78 -2.39 -0.02 1.54 16 40 H 0.07 1.73 7.65 -2.38 -0.02 1.71 16 41 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 42 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 43 H 0.12 0.58 8.14 -2.39 -0.02 0.56 16 44 H 0.08 0.86 8.14 -2.38 -0.02 0.84 16 45 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 46 H 0.08 1.39 8.03 -2.39 -0.02 1.37 16 47 H 0.08 2.97 5.71 -2.39 -0.01 2.96 16 48 H 0.13 3.02 8.05 -2.38 -0.02 3.01 16 49 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 50 H 0.08 1.43 8.14 -2.38 -0.02 1.41 16 51 H 0.07 1.23 7.90 -2.38 -0.02 1.21 16 Total: -1.00 -69.97 399.22 4.43 -65.55 By element: Atomic # 1 Polarization: 24.52 SS G_CDS: 1.10 Total: 25.62 kcal Atomic # 6 Polarization: 7.68 SS G_CDS: 8.16 Total: 15.84 kcal Atomic # 7 Polarization: -131.02 SS G_CDS: -6.82 Total: -137.85 kcal Atomic # 8 Polarization: -19.00 SS G_CDS: -0.06 Total: -19.07 kcal Atomic # 14 Polarization: 47.86 SS G_CDS: 2.05 Total: 49.91 kcal Total: -69.97 4.43 -65.55 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001434627930.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.541 kcal (2) G-P(sol) polarization free energy of solvation -69.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.546 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds