Wall clock time and date at job start Wed Apr 1 2020 06:24:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50703 * 119.99622 * 2 1 4 4 C 1.53001 * 109.47134 * 125.00336 * 3 2 1 5 5 N 1.46503 * 109.47416 * 180.02562 * 4 3 2 6 6 C 1.34805 * 126.59593 * 124.99592 * 5 4 3 7 7 C 1.36597 * 106.83953 * 179.97438 * 6 5 4 8 8 C 1.47517 * 125.77273 * 179.97438 * 7 6 5 9 9 O 1.21602 * 120.00146 * 353.44928 * 8 7 6 10 10 N 1.34775 * 120.00246 * 173.44984 * 8 7 6 11 11 C 1.46928 * 120.63063 * 3.18744 * 10 8 7 12 12 C 1.52764 * 109.00812 * 233.58574 * 11 10 8 13 13 C 1.53032 * 109.38568 * 305.58649 * 12 11 10 14 14 C 1.53045 * 109.53779 * 61.24105 * 13 12 11 15 15 H 1.08998 * 109.49556 * 58.58678 * 14 13 12 16 16 C 1.52998 * 109.52614 * 178.66939 * 14 13 12 17 17 C 1.46930 * 120.63144 * 183.47091 * 10 8 7 18 18 H 1.09001 * 109.58318 * 246.15471 * 17 10 8 19 19 C 1.52999 * 109.58903 * 6.57853 * 17 10 8 20 20 N 1.46497 * 109.46959 * 287.76942 * 19 17 10 21 21 C 1.36936 * 119.99932 * 175.41805 * 20 19 17 22 22 H 1.07996 * 120.00138 * 0.02562 * 21 20 19 23 23 C 1.38812 * 120.00202 * 179.97438 * 21 20 19 24 24 N 1.31622 * 120.00199 * 179.97438 * 23 21 20 25 25 Si 1.86800 * 119.99829 * 0.02562 * 23 21 20 26 26 H 1.48497 * 109.47281 * 89.99686 * 25 23 21 27 27 H 1.48500 * 109.47092 * 209.99593 * 25 23 21 28 28 H 1.48505 * 109.47109 * 329.99594 * 25 23 21 29 29 N 1.34398 * 108.45789 * 0.02562 * 7 6 5 30 30 N 1.28765 * 109.52186 * 359.75013 * 29 7 6 31 31 H 1.08000 * 119.99527 * 180.02562 * 1 2 3 32 32 H 1.07993 * 120.00091 * 359.72466 * 1 2 3 33 33 H 1.07996 * 120.00692 * 180.02562 * 2 1 3 34 34 H 1.09002 * 109.47004 * 244.99610 * 3 2 1 35 35 H 1.08994 * 109.47218 * 5.00256 * 3 2 1 36 36 H 1.08999 * 109.46834 * 299.99991 * 4 3 2 37 37 H 1.09004 * 109.47141 * 59.99858 * 4 3 2 38 38 H 1.07997 * 126.58132 * 359.92809 * 6 5 4 39 39 H 1.09003 * 109.58267 * 353.41709 * 11 10 8 40 40 H 1.08995 * 109.58437 * 113.84501 * 11 10 8 41 41 H 1.09006 * 109.56371 * 185.54893 * 12 11 10 42 42 H 1.09000 * 109.35965 * 65.49916 * 12 11 10 43 43 H 1.09000 * 109.46257 * 301.22343 * 13 12 11 44 44 H 1.09000 * 109.46362 * 181.25665 * 13 12 11 45 45 H 1.08993 * 109.47471 * 179.85726 * 16 14 13 46 46 H 1.09003 * 109.47013 * 299.85277 * 16 14 13 47 47 H 1.08998 * 109.47087 * 59.85245 * 16 14 13 48 48 H 1.09002 * 109.46830 * 47.76248 * 19 17 10 49 49 H 1.08996 * 109.47639 * 167.76632 * 19 17 10 50 50 H 0.97002 * 120.00096 * 355.41578 * 20 19 17 51 51 H 0.97001 * 120.00015 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 6 3.0350 1.3332 1.1816 5 7 3.7671 2.6022 1.1820 6 6 3.8480 3.4830 2.1993 7 6 4.6276 4.5176 1.7660 8 6 4.9876 5.7136 2.5508 9 8 4.4863 5.8976 3.6433 10 7 5.8722 6.6025 2.0571 11 6 6.4337 6.4307 0.7102 12 6 7.9583 6.4654 0.7985 13 6 8.3972 7.7508 1.5035 14 6 7.8287 7.7751 2.9242 15 1 8.1788 6.8997 3.4711 16 6 8.2949 9.0445 3.6399 17 6 6.2983 7.7584 2.8579 18 1 5.9426 8.6771 2.3914 19 6 5.7249 7.6424 4.2716 20 7 4.2833 7.9012 4.2366 21 6 3.5347 7.7610 5.3746 22 1 4.0070 7.4600 6.2980 23 6 2.1689 8.0067 5.3416 24 7 1.4493 7.8715 6.4354 25 14 1.3521 8.5280 3.7446 26 1 0.9017 7.3231 3.0027 27 1 0.1811 9.3901 4.0460 28 1 2.3240 9.2853 2.9157 29 7 5.0103 4.2620 0.5032 30 7 4.5222 3.1318 0.1260 31 1 -0.5399 -0.9353 0.0004 32 1 -0.5400 0.9352 0.0045 33 1 1.8501 -0.9352 -0.0004 34 1 2.6213 1.4027 -0.9314 35 1 1.3585 2.1316 0.0896 36 1 2.4773 1.2356 2.1129 37 1 3.7400 0.5067 1.0920 38 1 3.3846 3.3891 3.1703 39 1 6.1144 5.4722 0.3008 40 1 6.0893 7.2389 0.0651 41 1 8.3828 6.4377 -0.2051 42 1 8.3072 5.6023 1.3655 43 1 8.0269 8.6134 0.9495 44 1 9.4857 7.7875 1.5473 45 1 7.8875 9.0622 4.6507 46 1 9.3838 9.0560 3.6869 47 1 7.9456 9.9196 3.0920 48 1 5.9044 6.6380 4.6552 49 1 6.2092 8.3713 4.9212 50 1 3.8592 8.1719 3.4073 51 1 0.4949 8.0436 6.4124 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001482493904.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:24:56 Heat of formation + Delta-G solvation = 146.109900 kcal Electronic energy + Delta-G solvation = -32005.392074 eV Core-core repulsion = 27945.173846 eV Total energy + Delta-G solvation = -4060.218228 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.19105 -40.00620 -37.18777 -36.67783 -34.77874 -33.97217 -33.25742 -32.04857 -30.93204 -30.45319 -29.56387 -27.19507 -25.96285 -24.87040 -24.26046 -22.77507 -22.10516 -21.73418 -20.86261 -20.30749 -20.12391 -19.22835 -17.54489 -16.94863 -16.27485 -16.15710 -15.66389 -15.64052 -14.99446 -14.73367 -14.59453 -14.46518 -14.02532 -13.95478 -13.92537 -13.43564 -13.22471 -12.98392 -12.85406 -12.75305 -12.56697 -12.35161 -12.14156 -12.07631 -11.84825 -11.67287 -11.59112 -11.55173 -11.36066 -10.90909 -10.86220 -10.72369 -10.53479 -10.43274 -10.12031 -9.91891 -9.81264 -9.70150 -9.35205 -9.16359 -8.62796 -8.58027 -8.03097 -6.73629 -5.51188 -2.76367 1.19425 1.74624 1.93282 2.05579 3.35142 3.50898 3.55830 3.57569 3.80971 4.12523 4.28260 4.35639 4.53982 4.77205 4.78494 4.82066 4.84354 4.89544 4.91780 5.07352 5.11099 5.17230 5.18994 5.38219 5.43198 5.50447 5.54319 5.56944 5.65935 5.73221 5.77381 5.81705 5.88820 5.92343 5.92636 6.00815 6.13063 6.16329 6.24142 6.27118 6.28097 6.36374 6.38669 6.51228 6.55434 6.76390 6.94248 7.26626 7.86847 8.06116 8.24651 8.66834 8.84665 9.48486 10.22123 10.43624 11.69141 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.008126 B = 0.004185 C = 0.002966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3444.827749 B = 6688.192182 C = 9438.171014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.159 4.159 3 C -0.107 4.107 4 C 0.127 3.873 5 N -0.362 5.362 6 C 0.090 3.910 7 C -0.082 4.082 8 C 0.554 3.446 9 O -0.439 6.439 10 N -0.601 5.601 11 C 0.071 3.929 12 C -0.130 4.130 13 C -0.114 4.114 14 C -0.097 4.097 15 H 0.073 0.927 16 C -0.147 4.147 17 C 0.143 3.857 18 H 0.067 0.933 19 C 0.165 3.835 20 N -0.722 5.722 21 C -0.195 4.195 22 H 0.086 0.914 23 C -0.006 4.006 24 N -0.947 5.947 25 Si 0.881 3.119 26 H -0.291 1.291 27 H -0.297 1.297 28 H -0.283 1.283 29 N -0.213 5.213 30 N -0.077 5.077 31 H 0.101 0.899 32 H 0.099 0.901 33 H 0.114 0.886 34 H 0.090 0.910 35 H 0.076 0.924 36 H 0.107 0.893 37 H 0.098 0.902 38 H 0.206 0.794 39 H 0.140 0.860 40 H 0.055 0.945 41 H 0.068 0.932 42 H 0.061 0.939 43 H 0.061 0.939 44 H 0.060 0.940 45 H 0.066 0.934 46 H 0.052 0.948 47 H 0.054 0.946 48 H 0.049 0.951 49 H 0.025 0.975 50 H 0.355 0.645 51 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.315 -13.349 -14.882 22.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.178 4.178 3 C -0.145 4.145 4 C 0.006 3.994 5 N -0.148 5.148 6 C -0.066 4.066 7 C -0.221 4.221 8 C 0.337 3.663 9 O -0.306 6.306 10 N -0.337 5.337 11 C -0.053 4.053 12 C -0.168 4.168 13 C -0.152 4.152 14 C -0.117 4.117 15 H 0.092 0.908 16 C -0.204 4.204 17 C 0.040 3.960 18 H 0.085 0.915 19 C 0.038 3.962 20 N -0.366 5.366 21 C -0.326 4.326 22 H 0.104 0.896 23 C -0.199 4.199 24 N -0.598 5.598 25 Si 0.714 3.286 26 H -0.219 1.219 27 H -0.223 1.223 28 H -0.209 1.209 29 N -0.086 5.086 30 N -0.056 5.056 31 H 0.120 0.880 32 H 0.117 0.883 33 H 0.132 0.868 34 H 0.108 0.892 35 H 0.095 0.905 36 H 0.125 0.875 37 H 0.117 0.883 38 H 0.222 0.778 39 H 0.157 0.843 40 H 0.073 0.927 41 H 0.087 0.913 42 H 0.080 0.920 43 H 0.080 0.920 44 H 0.079 0.921 45 H 0.085 0.915 46 H 0.071 0.929 47 H 0.073 0.927 48 H 0.066 0.934 49 H 0.042 0.958 50 H 0.187 0.813 51 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 9.397 -13.563 -15.437 22.596 hybrid contribution -1.173 0.347 -0.366 1.277 sum 8.223 -13.216 -15.803 22.182 Atomic orbital electron populations 1.23978 0.95929 1.02348 0.99371 1.22727 0.96008 0.97594 1.01466 1.21028 0.98090 0.96812 0.98535 1.21994 0.94373 0.81413 1.01594 1.50413 1.35913 1.17462 1.11001 1.23460 0.98290 0.89360 0.95496 1.21932 1.07012 1.00461 0.92734 1.17107 0.80874 0.81717 0.86648 1.91391 1.50004 1.71283 1.17881 1.47672 1.44269 1.25362 1.16396 1.22603 0.92882 1.06194 0.83582 1.21799 0.96452 0.98098 1.00484 1.21600 0.99966 0.97937 0.95658 1.21453 0.94864 0.99224 0.96197 0.90823 1.21859 1.00466 0.96848 1.01272 1.21581 0.92992 0.87747 0.93670 0.91491 1.20901 0.85317 0.99020 0.90972 1.42579 1.03229 1.81427 1.09345 1.18967 0.89875 1.35184 0.88590 0.89647 1.24497 0.96030 1.03418 0.95991 1.69697 1.05897 1.58022 1.26233 0.86572 0.78970 0.78029 0.85079 1.21877 1.22349 1.20926 1.74040 1.16211 1.07393 1.10916 1.81874 1.09225 1.05630 1.08908 0.88030 0.88311 0.86766 0.89165 0.90491 0.87509 0.88350 0.77773 0.84335 0.92706 0.91339 0.92006 0.92023 0.92142 0.91459 0.92858 0.92668 0.93373 0.95775 0.81255 0.93684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.14 14.32 29.01 0.42 -0.73 16 2 C -0.16 -0.98 9.52 -36.02 -0.34 -1.32 16 3 C -0.11 -0.80 5.87 -27.88 -0.16 -0.96 16 4 C 0.13 0.95 6.52 -4.04 -0.03 0.92 16 5 N -0.36 -4.23 3.69 -61.06 -0.23 -4.46 16 6 C 0.09 1.24 11.28 -16.84 -0.19 1.05 16 7 C -0.08 -1.35 6.77 -83.55 -0.57 -1.91 16 8 C 0.55 10.51 7.42 -12.48 -0.09 10.42 16 9 O -0.44 -10.02 10.24 5.28 0.05 -9.97 16 10 N -0.60 -10.11 2.98 -166.70 -0.50 -10.61 16 11 C 0.07 0.99 6.27 -3.93 -0.02 0.97 16 12 C -0.13 -1.50 6.06 -26.84 -0.16 -1.66 16 13 C -0.11 -1.28 5.17 -26.69 -0.14 -1.42 16 14 C -0.10 -1.29 2.34 -90.50 -0.21 -1.51 16 15 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 16 C -0.15 -1.78 8.99 37.16 0.33 -1.44 16 17 C 0.14 2.41 2.38 -67.60 -0.16 2.25 16 18 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 19 C 0.16 3.43 4.84 -4.04 -0.02 3.41 16 20 N -0.72 -18.31 3.06 -59.91 -0.18 -18.49 16 21 C -0.20 -5.81 9.66 -15.06 -0.15 -5.96 16 22 H 0.09 2.73 8.06 -52.49 -0.42 2.31 16 23 C -0.01 -0.19 5.50 -17.43 -0.10 -0.29 16 24 N -0.95 -31.09 13.97 55.49 0.78 -30.31 16 25 Si 0.88 23.94 27.74 -169.99 -4.71 19.23 16 26 H -0.29 -7.95 7.11 56.52 0.40 -7.54 16 27 H -0.30 -8.10 7.11 56.52 0.40 -7.70 16 28 H -0.28 -7.36 6.52 56.52 0.37 -6.99 16 29 N -0.21 -3.25 8.64 32.84 0.28 -2.97 16 30 N -0.08 -1.07 13.65 60.35 0.82 -0.25 16 31 H 0.10 0.53 8.06 -52.49 -0.42 0.10 16 32 H 0.10 0.67 7.84 -52.49 -0.41 0.26 16 33 H 0.11 0.54 8.06 -52.49 -0.42 0.11 16 34 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.08 0.67 7.79 -51.93 -0.40 0.27 16 36 H 0.11 0.62 8.08 -51.93 -0.42 0.20 16 37 H 0.10 0.56 8.14 -51.93 -0.42 0.13 16 38 H 0.21 2.55 8.06 -52.49 -0.42 2.12 16 39 H 0.14 2.00 3.63 -128.98 -0.47 1.53 16 40 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 41 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 42 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 43 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 44 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 45 H 0.07 0.89 6.38 -51.93 -0.33 0.56 16 46 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 47 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 48 H 0.05 1.08 6.38 -51.93 -0.33 0.75 16 49 H 0.02 0.50 6.16 -51.93 -0.32 0.18 16 50 H 0.36 9.16 5.46 -40.82 -0.22 8.94 16 51 H 0.25 7.97 8.31 -40.82 -0.34 7.63 16 LS Contribution 399.42 15.07 6.02 6.02 Total: -1.00 -36.10 399.42 -7.67 -43.78 By element: Atomic # 1 Polarization: 14.62 SS G_CDS: -8.42 Total: 6.20 kcal Atomic # 6 Polarization: 3.42 SS G_CDS: -1.59 Total: 1.83 kcal Atomic # 7 Polarization: -68.07 SS G_CDS: 0.98 Total: -67.09 kcal Atomic # 8 Polarization: -10.02 SS G_CDS: 0.05 Total: -9.97 kcal Atomic # 14 Polarization: 23.94 SS G_CDS: -4.71 Total: 19.23 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -36.10 -7.67 -43.78 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482493904.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 189.889 kcal (2) G-P(sol) polarization free energy of solvation -36.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 153.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.779 kcal (6) G-S(sol) free energy of system = (1) + (5) 146.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds