Wall clock time and date at job start Wed Apr 1 2020 06:24:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50703 * 119.99622 * 2 1 4 4 C 1.53001 * 109.47134 * 125.00336 * 3 2 1 5 5 N 1.46503 * 109.47416 * 180.02562 * 4 3 2 6 6 C 1.34805 * 126.59593 * 124.99592 * 5 4 3 7 7 C 1.36597 * 106.83953 * 179.97438 * 6 5 4 8 8 C 1.47517 * 125.77273 * 179.97438 * 7 6 5 9 9 O 1.21602 * 120.00146 * 353.44928 * 8 7 6 10 10 N 1.34775 * 120.00246 * 173.44984 * 8 7 6 11 11 C 1.46928 * 120.63063 * 3.18744 * 10 8 7 12 12 C 1.52764 * 109.00812 * 233.58574 * 11 10 8 13 13 C 1.53032 * 109.38568 * 305.58649 * 12 11 10 14 14 C 1.53045 * 109.53779 * 61.24105 * 13 12 11 15 15 H 1.08998 * 109.49556 * 58.58678 * 14 13 12 16 16 C 1.52998 * 109.52614 * 178.66939 * 14 13 12 17 17 C 1.46930 * 120.63144 * 183.47091 * 10 8 7 18 18 H 1.09001 * 109.58318 * 246.15471 * 17 10 8 19 19 C 1.52999 * 109.58903 * 6.57853 * 17 10 8 20 20 N 1.46497 * 109.46959 * 287.76942 * 19 17 10 21 21 C 1.36936 * 119.99932 * 175.41805 * 20 19 17 22 22 H 1.07996 * 120.00138 * 0.02562 * 21 20 19 23 23 C 1.38812 * 120.00202 * 179.97438 * 21 20 19 24 24 N 1.31622 * 120.00199 * 179.97438 * 23 21 20 25 25 Si 1.86800 * 119.99829 * 0.02562 * 23 21 20 26 26 H 1.48497 * 109.47281 * 89.99686 * 25 23 21 27 27 H 1.48500 * 109.47092 * 209.99593 * 25 23 21 28 28 H 1.48505 * 109.47109 * 329.99594 * 25 23 21 29 29 N 1.34398 * 108.45789 * 0.02562 * 7 6 5 30 30 N 1.28765 * 109.52186 * 359.75013 * 29 7 6 31 31 H 1.08000 * 119.99527 * 180.02562 * 1 2 3 32 32 H 1.07993 * 120.00091 * 359.72466 * 1 2 3 33 33 H 1.07996 * 120.00692 * 180.02562 * 2 1 3 34 34 H 1.09002 * 109.47004 * 244.99610 * 3 2 1 35 35 H 1.08994 * 109.47218 * 5.00256 * 3 2 1 36 36 H 1.08999 * 109.46834 * 299.99991 * 4 3 2 37 37 H 1.09004 * 109.47141 * 59.99858 * 4 3 2 38 38 H 1.07997 * 126.58132 * 359.92809 * 6 5 4 39 39 H 1.09003 * 109.58267 * 353.41709 * 11 10 8 40 40 H 1.08995 * 109.58437 * 113.84501 * 11 10 8 41 41 H 1.09006 * 109.56371 * 185.54893 * 12 11 10 42 42 H 1.09000 * 109.35965 * 65.49916 * 12 11 10 43 43 H 1.09000 * 109.46257 * 301.22343 * 13 12 11 44 44 H 1.09000 * 109.46362 * 181.25665 * 13 12 11 45 45 H 1.08993 * 109.47471 * 179.85726 * 16 14 13 46 46 H 1.09003 * 109.47013 * 299.85277 * 16 14 13 47 47 H 1.08998 * 109.47087 * 59.85245 * 16 14 13 48 48 H 1.09002 * 109.46830 * 47.76248 * 19 17 10 49 49 H 1.08996 * 109.47639 * 167.76632 * 19 17 10 50 50 H 0.97002 * 120.00096 * 355.41578 * 20 19 17 51 51 H 0.97001 * 120.00015 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 6 3.0350 1.3332 1.1816 5 7 3.7671 2.6022 1.1820 6 6 3.8480 3.4830 2.1993 7 6 4.6276 4.5176 1.7660 8 6 4.9876 5.7136 2.5508 9 8 4.4863 5.8976 3.6433 10 7 5.8722 6.6025 2.0571 11 6 6.4337 6.4307 0.7102 12 6 7.9583 6.4654 0.7985 13 6 8.3972 7.7508 1.5035 14 6 7.8287 7.7751 2.9242 15 1 8.1788 6.8997 3.4711 16 6 8.2949 9.0445 3.6399 17 6 6.2983 7.7584 2.8579 18 1 5.9426 8.6771 2.3914 19 6 5.7249 7.6424 4.2716 20 7 4.2833 7.9012 4.2366 21 6 3.5347 7.7610 5.3746 22 1 4.0070 7.4600 6.2980 23 6 2.1689 8.0067 5.3416 24 7 1.4493 7.8715 6.4354 25 14 1.3521 8.5280 3.7446 26 1 0.9017 7.3231 3.0027 27 1 0.1811 9.3901 4.0460 28 1 2.3240 9.2853 2.9157 29 7 5.0103 4.2620 0.5032 30 7 4.5222 3.1318 0.1260 31 1 -0.5399 -0.9353 0.0004 32 1 -0.5400 0.9352 0.0045 33 1 1.8501 -0.9352 -0.0004 34 1 2.6213 1.4027 -0.9314 35 1 1.3585 2.1316 0.0896 36 1 2.4773 1.2356 2.1129 37 1 3.7400 0.5067 1.0920 38 1 3.3846 3.3891 3.1703 39 1 6.1144 5.4722 0.3008 40 1 6.0893 7.2389 0.0651 41 1 8.3828 6.4377 -0.2051 42 1 8.3072 5.6023 1.3655 43 1 8.0269 8.6134 0.9495 44 1 9.4857 7.7875 1.5473 45 1 7.8875 9.0622 4.6507 46 1 9.3838 9.0560 3.6869 47 1 7.9456 9.9196 3.0920 48 1 5.9044 6.6380 4.6552 49 1 6.2092 8.3713 4.9212 50 1 3.8592 8.1719 3.4073 51 1 0.4949 8.0436 6.4124 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001482493904.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:24:55 Heat of formation + Delta-G solvation = 122.684551 kcal Electronic energy + Delta-G solvation = -32006.407873 eV Core-core repulsion = 27945.173846 eV Total energy + Delta-G solvation = -4061.234028 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -43.30764 -41.35137 -38.47920 -37.41916 -36.50584 -35.06769 -34.39047 -33.74904 -32.32473 -31.95234 -30.40283 -28.64711 -27.12268 -25.92136 -25.57793 -24.25622 -23.48086 -22.85213 -22.22769 -21.27986 -20.79632 -20.52205 -19.47752 -18.21165 -17.35949 -17.18583 -16.94697 -16.63536 -16.34658 -15.99711 -15.88218 -15.81261 -15.43253 -15.20571 -15.01786 -14.71625 -14.58600 -14.10681 -14.05267 -13.97859 -13.77018 -13.68376 -13.47972 -13.21574 -13.08966 -12.91502 -12.87615 -12.69890 -12.46740 -12.19802 -12.12680 -12.06192 -11.88893 -11.74934 -11.62754 -11.34797 -11.16792 -10.92311 -10.83400 -10.38079 -10.29116 -10.07845 -9.46819 -8.84479 -7.89322 -5.10804 0.12188 0.68424 1.00024 1.32088 1.35254 1.37863 1.42178 2.06792 2.41632 2.54876 3.16303 3.32035 3.43114 3.62904 3.69112 3.74300 3.85529 3.97729 4.00691 4.03494 4.12503 4.19213 4.24561 4.27648 4.32444 4.36076 4.36539 4.53942 4.57584 4.73134 4.77117 4.83558 4.91090 4.91985 4.95270 5.01833 5.02834 5.12582 5.25222 5.27168 5.28577 5.38022 5.44713 5.48460 5.56353 5.68190 5.80265 5.85999 5.90577 6.33094 6.54068 6.89335 7.21591 7.43482 8.00256 8.19391 9.34612 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.008126 B = 0.004185 C = 0.002966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3444.827749 B = 6688.192182 C = 9438.171014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.156 4.156 3 C -0.102 4.102 4 C 0.118 3.882 5 N -0.345 5.345 6 C 0.094 3.906 7 C -0.109 4.109 8 C 0.554 3.446 9 O -0.494 6.494 10 N -0.600 5.600 11 C 0.066 3.934 12 C -0.123 4.123 13 C -0.108 4.108 14 C -0.090 4.090 15 H 0.066 0.934 16 C -0.144 4.144 17 C 0.147 3.853 18 H 0.066 0.934 19 C 0.168 3.832 20 N -0.721 5.721 21 C -0.175 4.175 22 H 0.050 0.950 23 C -0.071 4.071 24 N -0.995 5.995 25 Si 0.947 3.053 26 H -0.293 1.293 27 H -0.297 1.297 28 H -0.265 1.265 29 N -0.216 5.216 30 N -0.080 5.080 31 H 0.115 0.885 32 H 0.089 0.911 33 H 0.135 0.865 34 H 0.084 0.916 35 H 0.059 0.941 36 H 0.126 0.874 37 H 0.125 0.875 38 H 0.215 0.785 39 H 0.138 0.862 40 H 0.061 0.939 41 H 0.095 0.905 42 H 0.055 0.945 43 H 0.068 0.932 44 H 0.085 0.915 45 H 0.048 0.952 46 H 0.077 0.923 47 H 0.060 0.940 48 H 0.029 0.971 49 H 0.028 0.972 50 H 0.354 0.646 51 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.942 -14.189 -17.763 25.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.174 4.174 3 C -0.140 4.140 4 C -0.001 4.001 5 N -0.131 5.131 6 C -0.063 4.063 7 C -0.248 4.248 8 C 0.338 3.662 9 O -0.366 6.366 10 N -0.334 5.334 11 C -0.056 4.056 12 C -0.162 4.162 13 C -0.145 4.145 14 C -0.110 4.110 15 H 0.085 0.915 16 C -0.201 4.201 17 C 0.044 3.956 18 H 0.084 0.916 19 C 0.042 3.958 20 N -0.364 5.364 21 C -0.307 4.307 22 H 0.068 0.932 23 C -0.260 4.260 24 N -0.649 5.649 25 Si 0.778 3.222 26 H -0.220 1.220 27 H -0.224 1.224 28 H -0.190 1.190 29 N -0.089 5.089 30 N -0.059 5.059 31 H 0.133 0.867 32 H 0.107 0.893 33 H 0.153 0.847 34 H 0.102 0.898 35 H 0.078 0.922 36 H 0.144 0.856 37 H 0.143 0.857 38 H 0.231 0.769 39 H 0.154 0.846 40 H 0.079 0.921 41 H 0.113 0.887 42 H 0.074 0.926 43 H 0.087 0.913 44 H 0.103 0.897 45 H 0.067 0.933 46 H 0.096 0.904 47 H 0.079 0.921 48 H 0.047 0.953 49 H 0.045 0.955 50 H 0.186 0.814 51 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 11.096 -14.416 -18.396 25.872 hybrid contribution -1.607 0.442 0.504 1.741 sum 9.489 -13.974 -17.893 24.606 Atomic orbital electron populations 1.24105 0.96245 1.02628 0.99508 1.22779 0.95876 0.97544 1.01237 1.20961 0.97700 0.97147 0.98195 1.22475 0.94912 0.80104 1.02632 1.50672 1.34819 1.17954 1.09627 1.23612 0.97458 0.89101 0.96162 1.21701 1.09057 1.00581 0.93504 1.17486 0.80322 0.82247 0.86119 1.91359 1.52034 1.73097 1.20089 1.47854 1.43500 1.24659 1.17420 1.22803 0.94710 1.06306 0.81819 1.21769 0.94324 0.98069 1.02004 1.21582 1.01324 0.97956 0.93669 1.21411 0.91833 0.99612 0.98167 0.91548 1.21836 1.01986 0.96307 1.00011 1.21532 0.95422 0.87731 0.90939 0.91628 1.20925 0.83054 0.97742 0.94060 1.42513 1.04726 1.81429 1.07758 1.18883 0.90197 1.32883 0.88737 0.93201 1.25145 0.96674 1.04937 0.99261 1.69866 1.06004 1.60439 1.28593 0.85494 0.77980 0.77530 0.81212 1.22025 1.22390 1.19022 1.74029 1.16571 1.07956 1.10336 1.81791 1.09338 1.05293 1.09511 0.86687 0.89274 0.84729 0.89770 0.92192 0.85554 0.85685 0.76862 0.84587 0.92088 0.88693 0.92596 0.91318 0.89681 0.93309 0.90382 0.92137 0.95311 0.95457 0.81382 0.94027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.11 14.32 67.78 0.97 -1.14 16 2 C -0.16 -1.58 9.52 25.65 0.24 -1.34 16 3 C -0.10 -1.35 5.87 29.85 0.18 -1.18 16 4 C 0.12 1.48 6.52 86.38 0.56 2.04 16 5 N -0.34 -7.55 3.69 -347.09 -1.28 -8.83 16 6 C 0.09 2.55 11.28 83.85 0.95 3.50 16 7 C -0.11 -3.55 6.77 40.82 0.28 -3.28 16 8 C 0.55 21.27 7.42 86.69 0.64 21.91 16 9 O -0.49 -23.35 10.24 -4.04 -0.04 -23.40 16 10 N -0.60 -19.82 2.98 -799.56 -2.38 -22.20 16 11 C 0.07 1.72 6.27 86.22 0.54 2.26 16 12 C -0.12 -2.46 6.06 30.53 0.19 -2.28 16 13 C -0.11 -2.05 5.17 30.62 0.16 -1.89 16 14 C -0.09 -2.23 2.34 -10.71 -0.03 -2.26 16 15 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 16 C -0.14 -3.18 8.99 71.98 0.65 -2.54 16 17 C 0.15 4.86 2.38 44.97 0.11 4.96 16 18 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 19 C 0.17 7.17 4.84 86.38 0.42 7.59 16 20 N -0.72 -37.36 3.06 -343.47 -1.05 -38.41 16 21 C -0.18 -10.80 9.66 84.03 0.81 -9.99 16 22 H 0.05 3.37 8.06 -2.91 -0.02 3.35 16 23 C -0.07 -4.49 5.50 84.86 0.47 -4.03 16 24 N -0.99 -67.55 13.97 21.65 0.30 -67.24 16 25 Si 0.95 50.58 27.74 68.60 1.90 52.49 16 26 H -0.29 -15.58 7.11 99.48 0.71 -14.87 16 27 H -0.30 -15.75 7.11 99.48 0.71 -15.04 16 28 H -0.26 -13.16 6.52 99.48 0.65 -12.51 16 29 N -0.22 -6.39 8.64 -50.00 -0.43 -6.83 16 30 N -0.08 -2.10 13.65 37.02 0.51 -1.60 16 31 H 0.11 0.97 8.06 -2.91 -0.02 0.95 16 32 H 0.09 1.16 7.84 -2.91 -0.02 1.13 16 33 H 0.13 0.84 8.06 -2.91 -0.02 0.82 16 34 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 35 H 0.06 1.00 7.79 -2.39 -0.02 0.99 16 36 H 0.13 1.16 8.08 -2.39 -0.02 1.14 16 37 H 0.13 1.00 8.14 -2.39 -0.02 0.98 16 38 H 0.21 5.32 8.06 -2.91 -0.02 5.30 16 39 H 0.14 3.72 3.63 -102.09 -0.37 3.35 16 40 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 41 H 0.09 1.45 8.14 -2.38 -0.02 1.43 16 42 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 43 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 44 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 45 H 0.05 1.25 6.38 -2.39 -0.02 1.24 16 46 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 47 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 48 H 0.03 1.36 6.38 -2.39 -0.02 1.34 16 49 H 0.03 1.16 6.16 -2.39 -0.01 1.15 16 50 H 0.35 18.31 5.46 -92.71 -0.51 17.80 16 51 H 0.25 16.30 8.31 -92.71 -0.77 15.53 16 Total: -1.00 -81.34 399.42 4.65 -76.69 By element: Atomic # 1 Polarization: 26.98 SS G_CDS: 0.00 Total: 26.98 kcal Atomic # 6 Polarization: 5.23 SS G_CDS: 7.13 Total: 12.36 kcal Atomic # 7 Polarization: -140.78 SS G_CDS: -4.34 Total: -145.12 kcal Atomic # 8 Polarization: -23.35 SS G_CDS: -0.04 Total: -23.40 kcal Atomic # 14 Polarization: 50.58 SS G_CDS: 1.90 Total: 52.49 kcal Total: -81.34 4.65 -76.69 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482493904.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 199.374 kcal (2) G-P(sol) polarization free energy of solvation -81.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 118.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.689 kcal (6) G-S(sol) free energy of system = (1) + (5) 122.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds