Wall clock time and date at job start Wed Apr 1 2020 06:33:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.13096 * 2 1 4 4 N 1.45758 * 109.30235 * 240.51532 * 2 1 3 5 5 C 1.33351 * 124.11169 * 258.78441 * 4 2 1 6 6 O 1.21279 * 118.24612 * 177.77341 * 5 4 2 7 7 C 1.50178 * 123.50570 * 357.76164 * 5 4 2 8 8 C 1.53058 * 109.89640 * 17.57655 * 7 5 4 9 9 C 1.52923 * 109.30114 * 119.48455 * 2 1 3 10 10 H 1.08998 * 109.60385 * 189.47862 * 9 2 1 11 11 C 1.50707 * 109.59915 * 309.80275 * 9 2 1 12 12 N 1.30287 * 126.34756 * 59.95668 * 11 9 2 13 13 N 1.28533 * 110.05339 * 180.02562 * 12 11 9 14 14 C 1.31218 * 109.85706 * 359.74780 * 13 12 11 15 15 N 1.38576 * 126.47059 * 180.25497 * 14 13 12 16 16 C 1.46846 * 111.00230 * 62.34355 * 15 14 13 17 17 C 1.53035 * 109.52542 * 174.16192 * 16 15 14 18 18 C 1.53113 * 109.28203 * 59.17439 * 17 16 15 19 19 C 1.53121 * 109.16399 * 302.35232 * 18 17 16 20 20 H 1.09003 * 109.49941 * 297.70601 * 19 18 17 21 21 C 1.50695 * 109.50314 * 177.59203 * 19 18 17 22 22 H 1.08000 * 119.99920 * 240.19283 * 21 19 18 23 23 C 1.37883 * 120.00429 * 60.19613 * 21 19 18 24 24 N 1.31520 * 119.99373 * 359.97438 * 23 21 19 25 25 Si 1.86797 * 120.00296 * 179.97438 * 23 21 19 26 26 H 1.48498 * 109.47186 * 59.99989 * 25 23 21 27 27 H 1.48499 * 109.47007 * 179.97438 * 25 23 21 28 28 H 1.48497 * 109.46963 * 299.99821 * 25 23 21 29 29 C 1.46849 * 111.00294 * 298.13213 * 15 14 13 30 30 N 1.36450 * 107.05581 * 0.40013 * 14 13 12 31 31 C 1.46498 * 127.13986 * 179.87527 * 30 14 13 32 32 H 1.08997 * 109.46777 * 300.52038 * 1 2 3 33 33 H 1.09001 * 109.46458 * 60.51992 * 1 2 3 34 34 H 1.08998 * 109.47201 * 180.51297 * 1 2 3 35 35 H 0.97005 * 117.94335 * 78.76359 * 4 2 1 36 36 H 1.08995 * 109.40237 * 137.70648 * 7 5 4 37 37 H 1.09004 * 109.39940 * 257.45292 * 7 5 4 38 38 H 1.08997 * 109.68382 * 191.37450 * 8 7 5 39 39 H 1.09000 * 109.65402 * 70.84192 * 8 7 5 40 40 H 1.08998 * 109.46029 * 294.17352 * 16 15 14 41 41 H 1.09001 * 109.46135 * 54.14162 * 16 15 14 42 42 H 1.09001 * 109.50164 * 299.23480 * 17 16 15 43 43 H 1.08997 * 109.50363 * 179.12210 * 17 16 15 44 44 H 1.08997 * 109.52646 * 182.44243 * 18 17 16 45 45 H 1.09001 * 109.51874 * 62.25253 * 18 17 16 46 46 H 0.96999 * 119.99571 * 179.97438 * 24 23 21 47 47 H 1.09005 * 109.45992 * 305.85791 * 29 15 14 48 48 H 1.09006 * 109.46126 * 65.82105 * 29 15 14 49 49 H 1.09006 * 109.46938 * 264.78496 * 31 30 14 50 50 H 1.08993 * 109.47527 * 144.78125 * 31 30 14 51 51 H 1.09003 * 109.46848 * 24.77848 * 31 30 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8872 1.0298 0.0000 4 7 2.0118 -0.6771 -1.1975 5 6 2.4617 -1.9323 -1.2170 6 8 2.7992 -2.4045 -2.2819 7 6 2.5730 -2.7922 0.0091 8 6 1.7189 -2.2060 1.1358 9 6 2.0355 -0.7104 1.2564 10 1 3.1122 -0.5683 1.3486 11 6 1.3448 -0.1436 2.4700 12 7 0.0622 -0.1435 2.6989 13 7 -0.1841 0.4207 3.8273 14 6 0.9380 0.8092 4.3856 15 7 1.0716 1.4497 5.6073 16 6 0.5882 0.5997 6.7028 17 6 0.8837 1.2759 8.0434 18 6 0.1889 2.6396 8.0859 19 6 0.6738 3.4877 6.9068 20 1 1.7464 3.6588 6.9985 21 6 -0.0492 4.8099 6.9072 22 1 -0.6549 5.0944 6.0594 23 6 0.0626 5.6566 7.9897 24 7 0.7998 5.3099 9.0222 25 14 -0.8331 7.2958 7.9898 26 1 -2.2943 7.0615 7.8670 27 1 -0.5522 8.0132 9.2593 28 1 -0.3651 8.1156 6.8434 29 6 0.3843 2.7474 5.5992 30 7 1.9481 0.4665 3.5348 31 6 3.3821 0.6982 3.7253 32 1 -0.3633 0.5219 0.8853 33 1 -0.3632 0.5058 -0.8947 34 1 -0.3633 -1.0276 0.0092 35 1 2.0045 -0.1837 -2.0327 36 1 2.2256 -3.7991 -0.2221 37 1 3.6143 -2.8342 0.3286 38 1 1.9546 -2.7077 2.0743 39 1 0.6625 -2.3398 0.9027 40 1 -0.4868 0.4513 6.6001 41 1 1.0933 -0.3655 6.6636 42 1 1.9596 1.4121 8.1530 43 1 0.5108 0.6520 8.8557 44 1 0.4321 3.1434 9.0213 45 1 -0.8900 2.5010 8.0155 46 1 0.8787 5.9056 9.7835 47 1 0.7413 3.3422 4.7584 48 1 -0.6897 2.5889 5.5016 49 1 3.6705 1.6223 3.2242 50 1 3.9440 -0.1347 3.3030 51 1 3.5985 0.7797 4.7905 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001772171974.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:33:23 Heat of formation + Delta-G solvation = 47.066451 kcal Electronic energy + Delta-G solvation = -31700.223573 eV Core-core repulsion = 27635.710499 eV Total energy + Delta-G solvation = -4064.513074 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.05537 -40.71143 -38.44215 -37.44429 -35.01345 -34.07306 -33.54414 -32.19534 -31.45593 -30.07024 -28.88441 -27.62221 -27.18636 -25.08265 -24.20612 -23.80923 -23.00377 -21.70701 -21.26595 -20.77701 -19.08024 -18.50669 -17.51541 -17.22261 -16.84799 -16.55062 -16.08866 -15.83889 -15.66000 -14.76269 -14.63956 -14.55928 -14.35582 -14.14081 -14.00359 -13.67538 -13.49310 -13.04385 -12.90904 -12.72487 -12.65145 -12.48281 -12.27706 -12.11838 -12.00573 -11.88399 -11.51883 -11.26627 -11.09808 -10.99676 -10.87345 -10.80040 -10.46851 -10.26664 -10.08221 -10.07890 -9.98770 -9.64378 -9.45796 -9.33256 -8.96139 -8.75573 -8.45080 -8.26275 -6.06552 -4.12863 1.68422 2.22360 2.32159 2.76833 2.99080 3.28233 3.32994 3.35983 3.85013 4.03471 4.09079 4.17048 4.28410 4.40247 4.55429 4.57401 4.75679 4.91968 4.95821 5.00328 5.10070 5.23498 5.26298 5.33860 5.34452 5.40300 5.45545 5.55997 5.61787 5.68680 5.73971 5.85882 5.92439 5.96533 6.09996 6.25088 6.31312 6.32935 6.43666 6.50232 6.59589 6.62912 6.78499 6.97940 6.99042 7.23453 7.32662 7.62909 7.67412 7.87571 7.92343 8.04056 8.34940 8.78447 8.89906 9.52034 10.99579 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.020779 B = 0.002393 C = 0.002273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1347.195898 B =11696.094954 C =12314.896549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.147 3.853 3 H 0.088 0.912 4 N -0.712 5.712 5 C 0.520 3.480 6 O -0.561 6.561 7 C -0.134 4.134 8 C -0.114 4.114 9 C -0.002 4.002 10 H 0.094 0.906 11 C 0.164 3.836 12 N -0.272 5.272 13 N -0.315 5.315 14 C 0.371 3.629 15 N -0.471 5.471 16 C 0.076 3.924 17 C -0.116 4.116 18 C -0.114 4.114 19 C 0.058 3.942 20 H 0.035 0.965 21 C -0.517 4.517 22 H 0.055 0.945 23 C 0.065 3.935 24 N -0.888 5.888 25 Si 0.892 3.108 26 H -0.277 1.277 27 H -0.287 1.287 28 H -0.277 1.277 29 C 0.081 3.919 30 N -0.466 5.466 31 C 0.077 3.923 32 H 0.097 0.903 33 H 0.054 0.946 34 H 0.064 0.936 35 H 0.402 0.598 36 H 0.106 0.894 37 H 0.101 0.899 38 H 0.081 0.919 39 H 0.089 0.911 40 H 0.046 0.954 41 H 0.057 0.943 42 H 0.062 0.938 43 H 0.055 0.945 44 H 0.095 0.905 45 H 0.036 0.964 46 H 0.261 0.739 47 H 0.059 0.941 48 H 0.042 0.958 49 H 0.081 0.919 50 H 0.082 0.918 51 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.525 -13.458 -12.640 19.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.041 3.959 3 H 0.106 0.894 4 N -0.363 5.363 5 C 0.307 3.693 6 O -0.439 6.439 7 C -0.174 4.174 8 C -0.153 4.153 9 C -0.023 4.023 10 H 0.113 0.887 11 C -0.103 4.103 12 N -0.113 5.113 13 N -0.158 5.158 14 C 0.015 3.985 15 N -0.198 5.198 16 C -0.051 4.051 17 C -0.154 4.154 18 C -0.152 4.152 19 C 0.039 3.961 20 H 0.053 0.947 21 C -0.555 4.555 22 H 0.073 0.927 23 C -0.136 4.136 24 N -0.526 5.526 25 Si 0.720 3.280 26 H -0.202 1.202 27 H -0.213 1.213 28 H -0.203 1.203 29 C -0.045 4.045 30 N -0.158 5.158 31 C -0.066 4.066 32 H 0.116 0.884 33 H 0.073 0.927 34 H 0.083 0.917 35 H 0.238 0.762 36 H 0.125 0.875 37 H 0.120 0.880 38 H 0.099 0.901 39 H 0.108 0.892 40 H 0.065 0.935 41 H 0.076 0.924 42 H 0.081 0.919 43 H 0.074 0.926 44 H 0.113 0.887 45 H 0.055 0.945 46 H 0.071 0.929 47 H 0.077 0.923 48 H 0.060 0.940 49 H 0.099 0.901 50 H 0.101 0.899 51 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 5.815 -13.888 -12.872 19.809 hybrid contribution 0.216 1.376 -0.044 1.394 sum 6.030 -12.512 -12.916 18.967 Atomic orbital electron populations 1.22541 0.93159 1.03810 1.03776 1.20824 0.96125 0.95812 0.83101 0.89422 1.45566 1.64703 1.13964 1.12099 1.20206 0.76097 0.81951 0.91065 1.90770 1.49961 1.71555 1.31653 1.21665 1.02878 1.00096 0.92753 1.21743 1.01922 0.92536 0.99056 1.19713 0.99013 0.95670 0.87951 0.88746 1.23997 0.91106 1.03013 0.92232 1.73960 1.10892 1.16751 1.09712 1.74745 1.21949 1.15483 1.03659 1.22744 0.83366 0.99303 0.93081 1.58988 1.59303 1.04913 0.96564 1.22094 0.98487 0.94209 0.90325 1.21713 1.01561 0.98763 0.93378 1.21706 0.97405 0.92110 1.03962 1.18689 0.97603 0.92284 0.87478 0.94690 1.21034 1.29882 1.01629 1.02985 0.92724 1.24909 0.95177 0.98084 0.95474 1.69868 1.39246 1.36794 1.06732 0.86656 0.80294 0.83809 0.77246 1.20228 1.21270 1.20299 1.22459 0.95580 0.84433 1.01985 1.46228 1.09158 1.44044 1.16359 1.22058 0.76216 1.02612 1.05704 0.88424 0.92664 0.91676 0.76246 0.87539 0.88042 0.90074 0.89248 0.93541 0.92398 0.91944 0.92601 0.88701 0.94549 0.92882 0.92294 0.93985 0.90066 0.89922 0.87904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.63 8.56 37.16 0.32 -1.31 16 2 C 0.15 1.14 3.47 -68.37 -0.24 0.90 16 3 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 4 N -0.71 -5.53 5.03 -54.85 -0.28 -5.80 16 5 C 0.52 4.93 7.71 -11.87 -0.09 4.83 16 6 O -0.56 -7.62 17.78 5.56 0.10 -7.52 16 7 C -0.13 -0.89 6.03 -28.11 -0.17 -1.06 16 8 C -0.11 -0.81 5.25 -26.52 -0.14 -0.95 16 9 C 0.00 -0.02 2.43 -91.63 -0.22 -0.24 16 10 H 0.09 0.56 7.06 -51.93 -0.37 0.20 16 11 C 0.16 1.91 6.27 -154.02 -0.97 0.95 16 12 N -0.27 -4.05 9.24 32.99 0.30 -3.75 16 13 N -0.31 -5.55 12.19 30.31 0.37 -5.18 16 14 C 0.37 6.04 6.41 -318.88 -2.04 4.00 16 15 N -0.47 -8.23 4.64 -174.55 -0.81 -9.04 16 16 C 0.08 1.27 5.38 -3.84 -0.02 1.25 16 17 C -0.12 -2.05 6.09 -26.65 -0.16 -2.21 16 18 C -0.11 -2.50 5.03 -26.61 -0.13 -2.64 16 19 C 0.06 1.37 2.26 -91.70 -0.21 1.16 16 20 H 0.03 0.89 8.14 -51.93 -0.42 0.47 16 21 C -0.52 -13.53 8.56 -34.44 -0.29 -13.83 16 22 H 0.05 1.43 7.74 -52.49 -0.41 1.02 16 23 C 0.07 1.73 5.31 -17.81 -0.09 1.63 16 24 N -0.89 -24.13 11.36 55.43 0.63 -23.50 16 25 Si 0.89 20.62 29.54 -169.99 -5.02 15.60 16 26 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 27 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 28 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 29 C 0.08 1.66 4.60 -3.84 -0.02 1.64 16 30 N -0.47 -5.83 3.21 -121.46 -0.39 -6.22 16 31 C 0.08 0.66 10.83 59.85 0.65 1.31 16 32 H 0.10 1.18 5.37 -51.93 -0.28 0.90 16 33 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.06 0.63 6.51 -51.93 -0.34 0.29 16 35 H 0.40 2.83 8.80 -40.82 -0.36 2.47 16 36 H 0.11 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.09 0.73 6.38 -51.93 -0.33 0.40 16 40 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 41 H 0.06 0.87 8.10 -51.93 -0.42 0.45 16 42 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 43 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 44 H 0.09 2.34 6.16 -51.93 -0.32 2.02 16 45 H 0.04 0.82 8.14 -51.93 -0.42 0.39 16 46 H 0.26 6.83 8.31 -40.82 -0.34 6.49 16 47 H 0.06 1.22 8.10 -51.93 -0.42 0.80 16 48 H 0.04 0.92 8.14 -51.93 -0.42 0.49 16 49 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 50 H 0.08 0.45 7.45 -51.93 -0.39 0.06 16 51 H 0.10 0.96 8.11 -51.93 -0.42 0.54 16 LS Contribution 394.32 15.07 5.94 5.94 Total: -1.00 -31.51 394.32 -11.24 -42.75 By element: Atomic # 1 Polarization: 9.56 SS G_CDS: -8.26 Total: 1.30 kcal Atomic # 6 Polarization: -0.74 SS G_CDS: -3.83 Total: -4.57 kcal Atomic # 7 Polarization: -53.33 SS G_CDS: -0.17 Total: -53.50 kcal Atomic # 8 Polarization: -7.62 SS G_CDS: 0.10 Total: -7.52 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -31.51 -11.24 -42.75 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001772171974.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.820 kcal (2) G-P(sol) polarization free energy of solvation -31.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.754 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds