Wall clock time and date at job start Wed Apr 1 2020 06:33:22
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 H 1.08999 * 109.13096 * 2 1
4 4 N 1.45758 * 109.30235 * 240.51532 * 2 1 3
5 5 C 1.33351 * 124.11169 * 258.78441 * 4 2 1
6 6 O 1.21279 * 118.24612 * 177.77341 * 5 4 2
7 7 C 1.50178 * 123.50570 * 357.76164 * 5 4 2
8 8 C 1.53058 * 109.89640 * 17.57655 * 7 5 4
9 9 C 1.52923 * 109.30114 * 119.48455 * 2 1 3
10 10 H 1.08998 * 109.60385 * 189.47862 * 9 2 1
11 11 C 1.50707 * 109.59915 * 309.80275 * 9 2 1
12 12 N 1.30287 * 126.34756 * 59.95668 * 11 9 2
13 13 N 1.28533 * 110.05339 * 180.02562 * 12 11 9
14 14 C 1.31218 * 109.85706 * 359.74780 * 13 12 11
15 15 N 1.38576 * 126.47059 * 180.25497 * 14 13 12
16 16 C 1.46846 * 111.00230 * 62.34355 * 15 14 13
17 17 C 1.53035 * 109.52542 * 174.16192 * 16 15 14
18 18 C 1.53113 * 109.28203 * 59.17439 * 17 16 15
19 19 C 1.53121 * 109.16399 * 302.35232 * 18 17 16
20 20 H 1.09003 * 109.49941 * 297.70601 * 19 18 17
21 21 C 1.50695 * 109.50314 * 177.59203 * 19 18 17
22 22 H 1.08000 * 119.99920 * 240.19283 * 21 19 18
23 23 C 1.37883 * 120.00429 * 60.19613 * 21 19 18
24 24 N 1.31520 * 119.99373 * 359.97438 * 23 21 19
25 25 Si 1.86797 * 120.00296 * 179.97438 * 23 21 19
26 26 H 1.48498 * 109.47186 * 59.99989 * 25 23 21
27 27 H 1.48499 * 109.47007 * 179.97438 * 25 23 21
28 28 H 1.48497 * 109.46963 * 299.99821 * 25 23 21
29 29 C 1.46849 * 111.00294 * 298.13213 * 15 14 13
30 30 N 1.36450 * 107.05581 * 0.40013 * 14 13 12
31 31 C 1.46498 * 127.13986 * 179.87527 * 30 14 13
32 32 H 1.08997 * 109.46777 * 300.52038 * 1 2 3
33 33 H 1.09001 * 109.46458 * 60.51992 * 1 2 3
34 34 H 1.08998 * 109.47201 * 180.51297 * 1 2 3
35 35 H 0.97005 * 117.94335 * 78.76359 * 4 2 1
36 36 H 1.08995 * 109.40237 * 137.70648 * 7 5 4
37 37 H 1.09004 * 109.39940 * 257.45292 * 7 5 4
38 38 H 1.08997 * 109.68382 * 191.37450 * 8 7 5
39 39 H 1.09000 * 109.65402 * 70.84192 * 8 7 5
40 40 H 1.08998 * 109.46029 * 294.17352 * 16 15 14
41 41 H 1.09001 * 109.46135 * 54.14162 * 16 15 14
42 42 H 1.09001 * 109.50164 * 299.23480 * 17 16 15
43 43 H 1.08997 * 109.50363 * 179.12210 * 17 16 15
44 44 H 1.08997 * 109.52646 * 182.44243 * 18 17 16
45 45 H 1.09001 * 109.51874 * 62.25253 * 18 17 16
46 46 H 0.96999 * 119.99571 * 179.97438 * 24 23 21
47 47 H 1.09005 * 109.45992 * 305.85791 * 29 15 14
48 48 H 1.09006 * 109.46126 * 65.82105 * 29 15 14
49 49 H 1.09006 * 109.46938 * 264.78496 * 31 30 14
50 50 H 1.08993 * 109.47527 * 144.78125 * 31 30 14
51 51 H 1.09003 * 109.46848 * 24.77848 * 31 30 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8872 1.0298 0.0000
4 7 2.0118 -0.6771 -1.1975
5 6 2.4617 -1.9323 -1.2170
6 8 2.7992 -2.4045 -2.2819
7 6 2.5730 -2.7922 0.0091
8 6 1.7189 -2.2060 1.1358
9 6 2.0355 -0.7104 1.2564
10 1 3.1122 -0.5683 1.3486
11 6 1.3448 -0.1436 2.4700
12 7 0.0622 -0.1435 2.6989
13 7 -0.1841 0.4207 3.8273
14 6 0.9380 0.8092 4.3856
15 7 1.0716 1.4497 5.6073
16 6 0.5882 0.5997 6.7028
17 6 0.8837 1.2759 8.0434
18 6 0.1889 2.6396 8.0859
19 6 0.6738 3.4877 6.9068
20 1 1.7464 3.6588 6.9985
21 6 -0.0492 4.8099 6.9072
22 1 -0.6549 5.0944 6.0594
23 6 0.0626 5.6566 7.9897
24 7 0.7998 5.3099 9.0222
25 14 -0.8331 7.2958 7.9898
26 1 -2.2943 7.0615 7.8670
27 1 -0.5522 8.0132 9.2593
28 1 -0.3651 8.1156 6.8434
29 6 0.3843 2.7474 5.5992
30 7 1.9481 0.4665 3.5348
31 6 3.3821 0.6982 3.7253
32 1 -0.3633 0.5219 0.8853
33 1 -0.3632 0.5058 -0.8947
34 1 -0.3633 -1.0276 0.0092
35 1 2.0045 -0.1837 -2.0327
36 1 2.2256 -3.7991 -0.2221
37 1 3.6143 -2.8342 0.3286
38 1 1.9546 -2.7077 2.0743
39 1 0.6625 -2.3398 0.9027
40 1 -0.4868 0.4513 6.6001
41 1 1.0933 -0.3655 6.6636
42 1 1.9596 1.4121 8.1530
43 1 0.5108 0.6520 8.8557
44 1 0.4321 3.1434 9.0213
45 1 -0.8900 2.5010 8.0155
46 1 0.8787 5.9056 9.7835
47 1 0.7413 3.3422 4.7584
48 1 -0.6897 2.5889 5.5016
49 1 3.6705 1.6223 3.2242
50 1 3.9440 -0.1347 3.3030
51 1 3.5985 0.7797 4.7905
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001772171974.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 06:33:22
Heat of formation + Delta-G solvation = 28.424710 kcal
Electronic energy + Delta-G solvation = -31701.031940 eV
Core-core repulsion = 27635.710499 eV
Total energy + Delta-G solvation = -4065.321441 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.206 amu
Computer time = 0.84 seconds
Orbital eigenvalues (eV)
-44.12517 -41.44032 -39.91751 -38.27976 -36.03650 -35.64729 -34.37382 -33.58367
-32.45670 -31.81471 -29.86945 -28.49997 -27.99568 -26.99352 -25.39094 -24.73361
-23.80859 -23.31948 -22.31925 -21.87087 -20.41904 -19.56134 -18.70744 -18.20968
-17.80184 -17.71588 -17.16919 -16.99026 -16.61142 -16.45276 -15.64964 -15.60545
-15.27935 -15.20811 -15.02287 -14.64816 -14.50249 -14.47842 -14.36510 -14.11567
-13.71401 -13.51627 -13.41498 -13.01707 -12.85661 -12.82215 -12.71805 -12.66755
-12.61099 -12.29936 -12.08027 -11.93493 -11.88204 -11.79963 -11.58527 -11.35599
-11.07666 -11.02262 -10.84126 -10.76121 -10.40261 -10.20055 -9.95743 -9.75571
-8.09521 -6.22479 0.63821 1.23419 1.42730 1.43774 1.51019 1.60785
1.69366 2.26499 2.42671 2.78784 3.13237 3.18426 3.42789 3.53158
3.65835 3.81287 3.93891 3.97304 4.12509 4.14060 4.21221 4.33009
4.36191 4.37888 4.40945 4.44839 4.53589 4.60463 4.71790 4.75067
4.77199 4.83420 4.85860 4.89562 4.91792 4.98338 5.02552 5.05975
5.09010 5.24950 5.30082 5.43896 5.50049 5.62310 5.66149 5.76209
5.79047 5.99968 6.12985 6.30427 6.33872 6.38314 6.86594 7.18290
7.45021 7.68150 8.94957
Molecular weight = 347.21amu
Principal moments of inertia in cm(-1)
A = 0.020779 B = 0.002393 C = 0.002273
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1347.195898 B =11696.094954 C =12314.896549
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.172 4.172
2 C 0.154 3.846
3 H 0.101 0.899
4 N -0.701 5.701
5 C 0.517 3.483
6 O -0.606 6.606
7 C -0.125 4.125
8 C -0.108 4.108
9 C -0.001 4.001
10 H 0.128 0.872
11 C 0.190 3.810
12 N -0.298 5.298
13 N -0.350 5.350
14 C 0.348 3.652
15 N -0.463 5.463
16 C 0.081 3.919
17 C -0.105 4.105
18 C -0.108 4.108
19 C 0.060 3.940
20 H 0.011 0.989
21 C -0.539 4.539
22 H 0.046 0.954
23 C 0.022 3.978
24 N -0.909 5.909
25 Si 0.949 3.051
26 H -0.275 1.275
27 H -0.282 1.282
28 H -0.273 1.273
29 C 0.102 3.898
30 N -0.459 5.459
31 C 0.067 3.933
32 H 0.072 0.928
33 H 0.061 0.939
34 H 0.059 0.941
35 H 0.405 0.595
36 H 0.112 0.888
37 H 0.127 0.873
38 H 0.092 0.908
39 H 0.075 0.925
40 H 0.033 0.967
41 H 0.085 0.915
42 H 0.065 0.935
43 H 0.079 0.921
44 H 0.066 0.934
45 H 0.022 0.978
46 H 0.262 0.738
47 H 0.051 0.949
48 H 0.022 0.978
49 H 0.092 0.908
50 H 0.124 0.876
51 H 0.094 0.906
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 8.225 -14.611 -13.520 21.539
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.230 4.230
2 C 0.048 3.952
3 H 0.119 0.881
4 N -0.352 5.352
5 C 0.306 3.694
6 O -0.488 6.488
7 C -0.164 4.164
8 C -0.146 4.146
9 C -0.022 4.022
10 H 0.146 0.854
11 C -0.079 4.079
12 N -0.139 5.139
13 N -0.194 5.194
14 C -0.010 4.010
15 N -0.189 5.189
16 C -0.046 4.046
17 C -0.143 4.143
18 C -0.146 4.146
19 C 0.041 3.959
20 H 0.029 0.971
21 C -0.577 4.577
22 H 0.065 0.935
23 C -0.178 4.178
24 N -0.548 5.548
25 Si 0.775 3.225
26 H -0.201 1.201
27 H -0.207 1.207
28 H -0.198 1.198
29 C -0.025 4.025
30 N -0.151 5.151
31 C -0.074 4.074
32 H 0.090 0.910
33 H 0.080 0.920
34 H 0.078 0.922
35 H 0.242 0.758
36 H 0.131 0.869
37 H 0.145 0.855
38 H 0.110 0.890
39 H 0.093 0.907
40 H 0.051 0.949
41 H 0.103 0.897
42 H 0.083 0.917
43 H 0.098 0.902
44 H 0.085 0.915
45 H 0.041 0.959
46 H 0.071 0.929
47 H 0.069 0.931
48 H 0.040 0.960
49 H 0.110 0.890
50 H 0.142 0.858
51 H 0.113 0.887
Dipole moment (debyes) X Y Z Total
from point charges 7.524 -15.032 -13.749 21.717
hybrid contribution -0.315 1.718 0.146 1.753
sum 7.209 -13.315 -13.603 20.354
Atomic orbital electron populations
1.22461 0.94549 1.03155 1.02818 1.20761 0.94881 0.96507 0.83049
0.88076 1.45496 1.63701 1.13667 1.12293 1.20718 0.75179 0.82191
0.91319 1.90759 1.52189 1.72428 1.33462 1.21659 1.04248 0.99570
0.90936 1.21680 1.01265 0.91919 0.99752 1.19965 1.00427 0.95875
0.85958 0.85428 1.24658 0.90290 1.00571 0.92339 1.73942 1.12860
1.17949 1.09112 1.74649 1.23428 1.16383 1.04921 1.22535 0.84409
1.00822 0.93212 1.58852 1.58384 1.03948 0.97750 1.22061 0.98022
0.95036 0.89456 1.21589 1.01146 0.96505 0.95014 1.21515 0.96896
0.94335 1.01830 1.18563 0.95594 0.92117 0.89581 0.97123 1.21380
1.30174 1.03288 1.02888 0.93527 1.25592 0.95898 1.01090 0.95198
1.69984 1.40072 1.37710 1.07050 0.85754 0.79126 0.80208 0.77418
1.20079 1.20701 1.19780 1.21993 0.94504 0.86077 0.99957 1.46404
1.10127 1.43094 1.15432 1.22435 0.74087 1.05028 1.05879 0.90953
0.92030 0.92192 0.75816 0.86926 0.85526 0.88979 0.90681 0.94898
0.89652 0.91656 0.90211 0.91499 0.95932 0.92868 0.93053 0.95993
0.88952 0.85802 0.88715
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -3.02 8.56 71.98 0.62 -2.40 16
2 C 0.15 1.98 3.47 45.11 0.16 2.14 16
3 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16
4 N -0.70 -9.22 5.03 -446.63 -2.25 -11.46 16
5 C 0.52 8.58 7.71 87.71 0.68 9.25 16
6 O -0.61 -15.64 17.78 -3.03 -0.05 -15.69 16
7 C -0.12 -1.24 6.03 29.70 0.18 -1.06 16
8 C -0.11 -1.18 5.25 30.73 0.16 -1.02 16
9 C 0.00 -0.01 2.43 -11.45 -0.03 -0.04 16
10 H 0.13 0.81 7.06 -2.39 -0.02 0.79 16
11 C 0.19 4.00 6.27 137.64 0.86 4.86 16
12 N -0.30 -8.68 9.24 -49.53 -0.46 -9.13 16
13 N -0.35 -12.34 12.19 -58.01 -0.71 -13.05 16
14 C 0.35 11.06 6.41 260.12 1.67 12.73 16
15 N -0.46 -16.09 4.64 -706.16 -3.28 -19.37 16
16 C 0.08 2.65 5.38 86.33 0.46 3.12 16
17 C -0.10 -3.64 6.09 30.64 0.19 -3.45 16
18 C -0.11 -4.87 5.03 30.67 0.15 -4.71 16
19 C 0.06 2.92 2.26 -11.49 -0.03 2.89 16
20 H 0.01 0.56 8.14 -2.39 -0.02 0.54 16
21 C -0.54 -29.10 8.56 25.60 0.22 -28.88 16
22 H 0.05 2.52 7.74 -2.91 -0.02 2.50 16
23 C 0.02 1.18 5.31 84.66 0.45 1.63 16
24 N -0.91 -50.42 11.36 21.45 0.24 -50.18 16
25 Si 0.95 42.76 29.54 68.60 2.03 44.78 16
26 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16
27 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16
28 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16
29 C 0.10 4.28 4.60 86.32 0.40 4.68 16
30 N -0.46 -10.43 3.21 -538.18 -1.73 -12.16 16
31 C 0.07 0.91 10.83 127.77 1.38 2.30 16
32 H 0.07 1.72 5.37 -2.39 -0.01 1.71 16
33 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16
34 H 0.06 1.11 6.51 -2.39 -0.02 1.09 16
35 H 0.41 4.91 8.80 -92.70 -0.82 4.09 16
36 H 0.11 1.06 8.14 -2.39 -0.02 1.04 16
37 H 0.13 0.69 8.14 -2.38 -0.02 0.67 16
38 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16
39 H 0.07 1.08 6.38 -2.39 -0.02 1.07 16
40 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16
41 H 0.09 2.36 8.10 -2.39 -0.02 2.34 16
42 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16
43 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16
44 H 0.07 3.41 6.16 -2.39 -0.01 3.39 16
45 H 0.02 1.04 8.14 -2.39 -0.02 1.02 16
46 H 0.26 13.88 8.31 -92.71 -0.77 13.11 16
47 H 0.05 2.20 8.10 -2.38 -0.02 2.18 16
48 H 0.02 1.00 8.14 -2.38 -0.02 0.98 16
49 H 0.09 1.10 8.14 -2.38 -0.02 1.08 16
50 H 0.12 0.67 7.45 -2.39 -0.02 0.66 16
51 H 0.09 1.52 8.11 -2.39 -0.02 1.50 16
Total: -1.00 -71.77 394.32 1.45 -70.32
By element:
Atomic # 1 Polarization: 13.80 SS G_CDS: 0.13 Total: 13.93 kcal
Atomic # 6 Polarization: -5.50 SS G_CDS: 7.52 Total: 2.02 kcal
Atomic # 7 Polarization: -107.18 SS G_CDS: -8.17 Total: -115.36 kcal
Atomic # 8 Polarization: -15.64 SS G_CDS: -0.05 Total: -15.69 kcal
Atomic # 14 Polarization: 42.76 SS G_CDS: 2.03 Total: 44.78 kcal
Total: -71.77 1.45 -70.32 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001772171974.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 98.743 kcal
(2) G-P(sol) polarization free energy of solvation -71.766 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.977 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.447 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.318 kcal
(6) G-S(sol) free energy of system = (1) + (5) 28.425 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.84 seconds