Wall clock time and date at job start Wed Apr 1 2020 06:33:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.13096 * 2 1 4 4 N 1.45758 * 109.30235 * 240.51532 * 2 1 3 5 5 C 1.33351 * 124.11169 * 258.78441 * 4 2 1 6 6 O 1.21279 * 118.24612 * 177.77341 * 5 4 2 7 7 C 1.50178 * 123.50570 * 357.76164 * 5 4 2 8 8 C 1.53058 * 109.89640 * 17.57655 * 7 5 4 9 9 C 1.52923 * 109.30114 * 119.48455 * 2 1 3 10 10 H 1.08998 * 109.60385 * 189.47862 * 9 2 1 11 11 C 1.50707 * 109.59915 * 309.80275 * 9 2 1 12 12 N 1.30287 * 126.34756 * 59.95668 * 11 9 2 13 13 N 1.28533 * 110.05339 * 180.02562 * 12 11 9 14 14 C 1.31218 * 109.85706 * 359.74780 * 13 12 11 15 15 N 1.38576 * 126.47059 * 180.25497 * 14 13 12 16 16 C 1.46846 * 111.00230 * 62.34355 * 15 14 13 17 17 C 1.53035 * 109.52542 * 174.16192 * 16 15 14 18 18 C 1.53113 * 109.28203 * 59.17439 * 17 16 15 19 19 C 1.53121 * 109.16399 * 302.35232 * 18 17 16 20 20 H 1.09003 * 109.49941 * 297.70601 * 19 18 17 21 21 C 1.50695 * 109.50314 * 177.59203 * 19 18 17 22 22 H 1.08000 * 119.99920 * 240.19283 * 21 19 18 23 23 C 1.37883 * 120.00429 * 60.19613 * 21 19 18 24 24 N 1.31520 * 119.99373 * 359.97438 * 23 21 19 25 25 Si 1.86797 * 120.00296 * 179.97438 * 23 21 19 26 26 H 1.48498 * 109.47186 * 59.99989 * 25 23 21 27 27 H 1.48499 * 109.47007 * 179.97438 * 25 23 21 28 28 H 1.48497 * 109.46963 * 299.99821 * 25 23 21 29 29 C 1.46849 * 111.00294 * 298.13213 * 15 14 13 30 30 N 1.36450 * 107.05581 * 0.40013 * 14 13 12 31 31 C 1.46498 * 127.13986 * 179.87527 * 30 14 13 32 32 H 1.08997 * 109.46777 * 300.52038 * 1 2 3 33 33 H 1.09001 * 109.46458 * 60.51992 * 1 2 3 34 34 H 1.08998 * 109.47201 * 180.51297 * 1 2 3 35 35 H 0.97005 * 117.94335 * 78.76359 * 4 2 1 36 36 H 1.08995 * 109.40237 * 137.70648 * 7 5 4 37 37 H 1.09004 * 109.39940 * 257.45292 * 7 5 4 38 38 H 1.08997 * 109.68382 * 191.37450 * 8 7 5 39 39 H 1.09000 * 109.65402 * 70.84192 * 8 7 5 40 40 H 1.08998 * 109.46029 * 294.17352 * 16 15 14 41 41 H 1.09001 * 109.46135 * 54.14162 * 16 15 14 42 42 H 1.09001 * 109.50164 * 299.23480 * 17 16 15 43 43 H 1.08997 * 109.50363 * 179.12210 * 17 16 15 44 44 H 1.08997 * 109.52646 * 182.44243 * 18 17 16 45 45 H 1.09001 * 109.51874 * 62.25253 * 18 17 16 46 46 H 0.96999 * 119.99571 * 179.97438 * 24 23 21 47 47 H 1.09005 * 109.45992 * 305.85791 * 29 15 14 48 48 H 1.09006 * 109.46126 * 65.82105 * 29 15 14 49 49 H 1.09006 * 109.46938 * 264.78496 * 31 30 14 50 50 H 1.08993 * 109.47527 * 144.78125 * 31 30 14 51 51 H 1.09003 * 109.46848 * 24.77848 * 31 30 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8872 1.0298 0.0000 4 7 2.0118 -0.6771 -1.1975 5 6 2.4617 -1.9323 -1.2170 6 8 2.7992 -2.4045 -2.2819 7 6 2.5730 -2.7922 0.0091 8 6 1.7189 -2.2060 1.1358 9 6 2.0355 -0.7104 1.2564 10 1 3.1122 -0.5683 1.3486 11 6 1.3448 -0.1436 2.4700 12 7 0.0622 -0.1435 2.6989 13 7 -0.1841 0.4207 3.8273 14 6 0.9380 0.8092 4.3856 15 7 1.0716 1.4497 5.6073 16 6 0.5882 0.5997 6.7028 17 6 0.8837 1.2759 8.0434 18 6 0.1889 2.6396 8.0859 19 6 0.6738 3.4877 6.9068 20 1 1.7464 3.6588 6.9985 21 6 -0.0492 4.8099 6.9072 22 1 -0.6549 5.0944 6.0594 23 6 0.0626 5.6566 7.9897 24 7 0.7998 5.3099 9.0222 25 14 -0.8331 7.2958 7.9898 26 1 -2.2943 7.0615 7.8670 27 1 -0.5522 8.0132 9.2593 28 1 -0.3651 8.1156 6.8434 29 6 0.3843 2.7474 5.5992 30 7 1.9481 0.4665 3.5348 31 6 3.3821 0.6982 3.7253 32 1 -0.3633 0.5219 0.8853 33 1 -0.3632 0.5058 -0.8947 34 1 -0.3633 -1.0276 0.0092 35 1 2.0045 -0.1837 -2.0327 36 1 2.2256 -3.7991 -0.2221 37 1 3.6143 -2.8342 0.3286 38 1 1.9546 -2.7077 2.0743 39 1 0.6625 -2.3398 0.9027 40 1 -0.4868 0.4513 6.6001 41 1 1.0933 -0.3655 6.6636 42 1 1.9596 1.4121 8.1530 43 1 0.5108 0.6520 8.8557 44 1 0.4321 3.1434 9.0213 45 1 -0.8900 2.5010 8.0155 46 1 0.8787 5.9056 9.7835 47 1 0.7413 3.3422 4.7584 48 1 -0.6897 2.5889 5.5016 49 1 3.6705 1.6223 3.2242 50 1 3.9440 -0.1347 3.3030 51 1 3.5985 0.7797 4.7905 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001772171974.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:33:22 Heat of formation + Delta-G solvation = 28.424710 kcal Electronic energy + Delta-G solvation = -31701.031940 eV Core-core repulsion = 27635.710499 eV Total energy + Delta-G solvation = -4065.321441 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -44.12517 -41.44032 -39.91751 -38.27976 -36.03650 -35.64729 -34.37382 -33.58367 -32.45670 -31.81471 -29.86945 -28.49997 -27.99568 -26.99352 -25.39094 -24.73361 -23.80859 -23.31948 -22.31925 -21.87087 -20.41904 -19.56134 -18.70744 -18.20968 -17.80184 -17.71588 -17.16919 -16.99026 -16.61142 -16.45276 -15.64964 -15.60545 -15.27935 -15.20811 -15.02287 -14.64816 -14.50249 -14.47842 -14.36510 -14.11567 -13.71401 -13.51627 -13.41498 -13.01707 -12.85661 -12.82215 -12.71805 -12.66755 -12.61099 -12.29936 -12.08027 -11.93493 -11.88204 -11.79963 -11.58527 -11.35599 -11.07666 -11.02262 -10.84126 -10.76121 -10.40261 -10.20055 -9.95743 -9.75571 -8.09521 -6.22479 0.63821 1.23419 1.42730 1.43774 1.51019 1.60785 1.69366 2.26499 2.42671 2.78784 3.13237 3.18426 3.42789 3.53158 3.65835 3.81287 3.93891 3.97304 4.12509 4.14060 4.21221 4.33009 4.36191 4.37888 4.40945 4.44839 4.53589 4.60463 4.71790 4.75067 4.77199 4.83420 4.85860 4.89562 4.91792 4.98338 5.02552 5.05975 5.09010 5.24950 5.30082 5.43896 5.50049 5.62310 5.66149 5.76209 5.79047 5.99968 6.12985 6.30427 6.33872 6.38314 6.86594 7.18290 7.45021 7.68150 8.94957 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.020779 B = 0.002393 C = 0.002273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1347.195898 B =11696.094954 C =12314.896549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.154 3.846 3 H 0.101 0.899 4 N -0.701 5.701 5 C 0.517 3.483 6 O -0.606 6.606 7 C -0.125 4.125 8 C -0.108 4.108 9 C -0.001 4.001 10 H 0.128 0.872 11 C 0.190 3.810 12 N -0.298 5.298 13 N -0.350 5.350 14 C 0.348 3.652 15 N -0.463 5.463 16 C 0.081 3.919 17 C -0.105 4.105 18 C -0.108 4.108 19 C 0.060 3.940 20 H 0.011 0.989 21 C -0.539 4.539 22 H 0.046 0.954 23 C 0.022 3.978 24 N -0.909 5.909 25 Si 0.949 3.051 26 H -0.275 1.275 27 H -0.282 1.282 28 H -0.273 1.273 29 C 0.102 3.898 30 N -0.459 5.459 31 C 0.067 3.933 32 H 0.072 0.928 33 H 0.061 0.939 34 H 0.059 0.941 35 H 0.405 0.595 36 H 0.112 0.888 37 H 0.127 0.873 38 H 0.092 0.908 39 H 0.075 0.925 40 H 0.033 0.967 41 H 0.085 0.915 42 H 0.065 0.935 43 H 0.079 0.921 44 H 0.066 0.934 45 H 0.022 0.978 46 H 0.262 0.738 47 H 0.051 0.949 48 H 0.022 0.978 49 H 0.092 0.908 50 H 0.124 0.876 51 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.225 -14.611 -13.520 21.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.048 3.952 3 H 0.119 0.881 4 N -0.352 5.352 5 C 0.306 3.694 6 O -0.488 6.488 7 C -0.164 4.164 8 C -0.146 4.146 9 C -0.022 4.022 10 H 0.146 0.854 11 C -0.079 4.079 12 N -0.139 5.139 13 N -0.194 5.194 14 C -0.010 4.010 15 N -0.189 5.189 16 C -0.046 4.046 17 C -0.143 4.143 18 C -0.146 4.146 19 C 0.041 3.959 20 H 0.029 0.971 21 C -0.577 4.577 22 H 0.065 0.935 23 C -0.178 4.178 24 N -0.548 5.548 25 Si 0.775 3.225 26 H -0.201 1.201 27 H -0.207 1.207 28 H -0.198 1.198 29 C -0.025 4.025 30 N -0.151 5.151 31 C -0.074 4.074 32 H 0.090 0.910 33 H 0.080 0.920 34 H 0.078 0.922 35 H 0.242 0.758 36 H 0.131 0.869 37 H 0.145 0.855 38 H 0.110 0.890 39 H 0.093 0.907 40 H 0.051 0.949 41 H 0.103 0.897 42 H 0.083 0.917 43 H 0.098 0.902 44 H 0.085 0.915 45 H 0.041 0.959 46 H 0.071 0.929 47 H 0.069 0.931 48 H 0.040 0.960 49 H 0.110 0.890 50 H 0.142 0.858 51 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 7.524 -15.032 -13.749 21.717 hybrid contribution -0.315 1.718 0.146 1.753 sum 7.209 -13.315 -13.603 20.354 Atomic orbital electron populations 1.22461 0.94549 1.03155 1.02818 1.20761 0.94881 0.96507 0.83049 0.88076 1.45496 1.63701 1.13667 1.12293 1.20718 0.75179 0.82191 0.91319 1.90759 1.52189 1.72428 1.33462 1.21659 1.04248 0.99570 0.90936 1.21680 1.01265 0.91919 0.99752 1.19965 1.00427 0.95875 0.85958 0.85428 1.24658 0.90290 1.00571 0.92339 1.73942 1.12860 1.17949 1.09112 1.74649 1.23428 1.16383 1.04921 1.22535 0.84409 1.00822 0.93212 1.58852 1.58384 1.03948 0.97750 1.22061 0.98022 0.95036 0.89456 1.21589 1.01146 0.96505 0.95014 1.21515 0.96896 0.94335 1.01830 1.18563 0.95594 0.92117 0.89581 0.97123 1.21380 1.30174 1.03288 1.02888 0.93527 1.25592 0.95898 1.01090 0.95198 1.69984 1.40072 1.37710 1.07050 0.85754 0.79126 0.80208 0.77418 1.20079 1.20701 1.19780 1.21993 0.94504 0.86077 0.99957 1.46404 1.10127 1.43094 1.15432 1.22435 0.74087 1.05028 1.05879 0.90953 0.92030 0.92192 0.75816 0.86926 0.85526 0.88979 0.90681 0.94898 0.89652 0.91656 0.90211 0.91499 0.95932 0.92868 0.93053 0.95993 0.88952 0.85802 0.88715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.02 8.56 71.98 0.62 -2.40 16 2 C 0.15 1.98 3.47 45.11 0.16 2.14 16 3 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 4 N -0.70 -9.22 5.03 -446.63 -2.25 -11.46 16 5 C 0.52 8.58 7.71 87.71 0.68 9.25 16 6 O -0.61 -15.64 17.78 -3.03 -0.05 -15.69 16 7 C -0.12 -1.24 6.03 29.70 0.18 -1.06 16 8 C -0.11 -1.18 5.25 30.73 0.16 -1.02 16 9 C 0.00 -0.01 2.43 -11.45 -0.03 -0.04 16 10 H 0.13 0.81 7.06 -2.39 -0.02 0.79 16 11 C 0.19 4.00 6.27 137.64 0.86 4.86 16 12 N -0.30 -8.68 9.24 -49.53 -0.46 -9.13 16 13 N -0.35 -12.34 12.19 -58.01 -0.71 -13.05 16 14 C 0.35 11.06 6.41 260.12 1.67 12.73 16 15 N -0.46 -16.09 4.64 -706.16 -3.28 -19.37 16 16 C 0.08 2.65 5.38 86.33 0.46 3.12 16 17 C -0.10 -3.64 6.09 30.64 0.19 -3.45 16 18 C -0.11 -4.87 5.03 30.67 0.15 -4.71 16 19 C 0.06 2.92 2.26 -11.49 -0.03 2.89 16 20 H 0.01 0.56 8.14 -2.39 -0.02 0.54 16 21 C -0.54 -29.10 8.56 25.60 0.22 -28.88 16 22 H 0.05 2.52 7.74 -2.91 -0.02 2.50 16 23 C 0.02 1.18 5.31 84.66 0.45 1.63 16 24 N -0.91 -50.42 11.36 21.45 0.24 -50.18 16 25 Si 0.95 42.76 29.54 68.60 2.03 44.78 16 26 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 27 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 28 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 29 C 0.10 4.28 4.60 86.32 0.40 4.68 16 30 N -0.46 -10.43 3.21 -538.18 -1.73 -12.16 16 31 C 0.07 0.91 10.83 127.77 1.38 2.30 16 32 H 0.07 1.72 5.37 -2.39 -0.01 1.71 16 33 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 34 H 0.06 1.11 6.51 -2.39 -0.02 1.09 16 35 H 0.41 4.91 8.80 -92.70 -0.82 4.09 16 36 H 0.11 1.06 8.14 -2.39 -0.02 1.04 16 37 H 0.13 0.69 8.14 -2.38 -0.02 0.67 16 38 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 39 H 0.07 1.08 6.38 -2.39 -0.02 1.07 16 40 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 41 H 0.09 2.36 8.10 -2.39 -0.02 2.34 16 42 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 43 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 44 H 0.07 3.41 6.16 -2.39 -0.01 3.39 16 45 H 0.02 1.04 8.14 -2.39 -0.02 1.02 16 46 H 0.26 13.88 8.31 -92.71 -0.77 13.11 16 47 H 0.05 2.20 8.10 -2.38 -0.02 2.18 16 48 H 0.02 1.00 8.14 -2.38 -0.02 0.98 16 49 H 0.09 1.10 8.14 -2.38 -0.02 1.08 16 50 H 0.12 0.67 7.45 -2.39 -0.02 0.66 16 51 H 0.09 1.52 8.11 -2.39 -0.02 1.50 16 Total: -1.00 -71.77 394.32 1.45 -70.32 By element: Atomic # 1 Polarization: 13.80 SS G_CDS: 0.13 Total: 13.93 kcal Atomic # 6 Polarization: -5.50 SS G_CDS: 7.52 Total: 2.02 kcal Atomic # 7 Polarization: -107.18 SS G_CDS: -8.17 Total: -115.36 kcal Atomic # 8 Polarization: -15.64 SS G_CDS: -0.05 Total: -15.69 kcal Atomic # 14 Polarization: 42.76 SS G_CDS: 2.03 Total: 44.78 kcal Total: -71.77 1.45 -70.32 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001772171974.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.743 kcal (2) G-P(sol) polarization free energy of solvation -71.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.318 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds