Wall clock time and date at job start Wed Apr 1 2020 05:18:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.47314 * 2 1 4 4 C 1.47201 * 109.47165 * 239.99398 * 2 1 3 5 5 N 2.60796 * 109.47212 * 239.99543 * 2 1 3 6 6 C 1.53002 * 109.46652 * 119.99634 * 2 1 3 7 7 N 1.46904 * 109.47297 * 294.99851 * 6 2 1 8 8 C 1.46893 * 111.00183 * 293.95852 * 7 6 2 9 9 C 1.38582 * 110.99892 * 169.99890 * 7 6 2 10 10 N 1.31215 * 126.47201 * 19.70149 * 9 7 6 11 11 N 1.28534 * 109.85804 * 179.97438 * 10 9 7 12 12 C 1.30298 * 110.05211 * 0.02562 * 11 10 9 13 13 C 1.50696 * 126.34417 * 179.97438 * 12 11 10 14 14 C 1.53003 * 109.46839 * 92.50740 * 13 12 11 15 15 C 1.50706 * 109.46818 * 175.86996 * 14 13 12 16 16 H 1.07995 * 120.00151 * 0.02562 * 15 14 13 17 17 C 1.37880 * 119.99488 * 180.02562 * 15 14 13 18 18 N 1.31515 * 120.00435 * 359.97438 * 17 15 14 19 19 Si 1.86802 * 119.99412 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.46898 * 179.97438 * 19 17 15 21 21 H 1.48505 * 109.47035 * 299.99376 * 19 17 15 22 22 H 1.48494 * 109.47568 * 59.99766 * 19 17 15 23 23 N 1.36456 * 126.47147 * 199.98353 * 9 7 6 24 24 C 1.46496 * 127.13642 * 0.02562 * 23 9 7 25 25 C 1.52997 * 109.47300 * 95.46037 * 24 23 9 26 26 H 1.08998 * 109.86881 * 53.73829 * 25 24 23 27 27 C 1.54104 * 109.87823 * 174.73857 * 25 24 23 28 28 C 1.54809 * 104.18594 * 121.45487 * 27 25 24 29 29 C 1.55001 * 102.09442 * 20.88144 * 28 27 25 30 30 O 1.43744 * 109.88050 * 292.72440 * 25 24 23 31 31 H 1.09004 * 109.47205 * 60.00613 * 1 2 3 32 32 H 1.08998 * 109.47314 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.47681 * 300.00604 * 1 2 3 34 34 H 1.08999 * 109.47132 * 175.00427 * 6 2 1 35 35 H 1.08999 * 109.47490 * 55.00248 * 6 2 1 36 36 H 1.09003 * 109.46949 * 301.81296 * 8 7 6 37 37 H 1.09002 * 109.47174 * 61.81192 * 8 7 6 38 38 H 1.08995 * 109.47423 * 181.81184 * 8 7 6 39 39 H 1.08999 * 109.47446 * 332.50743 * 13 12 11 40 40 H 1.08998 * 109.47081 * 212.50504 * 13 12 11 41 41 H 1.08999 * 109.47267 * 55.87677 * 14 13 12 42 42 H 1.08997 * 109.47327 * 295.87203 * 14 13 12 43 43 H 0.96998 * 119.99763 * 359.97438 * 18 17 15 44 44 H 1.09002 * 109.46986 * 215.46054 * 24 23 9 45 45 H 1.09001 * 109.47430 * 335.45708 * 24 23 9 46 46 H 1.08997 * 110.49289 * 240.13076 * 27 25 24 47 47 H 1.08995 * 110.48718 * 2.65110 * 27 25 24 48 48 H 1.08999 * 110.91226 * 139.07819 * 28 27 25 49 49 H 1.08996 * 110.90991 * 262.64914 * 28 27 25 50 50 H 1.08998 * 110.61559 * 81.47573 * 29 28 27 51 51 H 1.09003 * 110.61828 * 204.32011 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0207 -0.6940 -1.2018 5 7 2.3993 -1.2296 -2.1293 6 6 2.0399 -0.7212 1.2493 7 7 1.6512 0.0376 2.4457 8 6 2.3339 1.3375 2.4895 9 6 1.8974 -0.6918 3.5981 10 7 2.7122 -1.7137 3.7152 11 7 2.6958 -2.1486 4.9246 12 6 1.8761 -1.4363 5.6446 13 6 1.5762 -1.6279 7.1089 14 6 2.5108 -0.7469 7.9404 15 6 2.1442 -0.8611 9.3977 16 1 1.3267 -1.4986 9.7006 17 6 2.8525 -0.1517 10.3443 18 7 3.8484 0.6242 9.9756 19 14 2.3985 -0.2938 12.1508 20 1 3.3056 0.5613 12.9578 21 1 0.9951 0.1512 12.3449 22 1 2.5344 -1.7071 12.5857 23 7 1.3343 -0.4863 4.8239 24 6 0.3546 0.5409 5.1862 25 6 -1.0555 -0.0466 5.1014 26 1 -1.1153 -0.9544 5.7017 27 6 -2.0838 0.9841 5.6065 28 6 -3.0365 1.1902 4.4038 29 6 -2.7958 -0.0971 3.5745 30 8 -1.3800 -0.3432 3.7329 31 1 -0.3634 0.5138 -0.8901 32 1 -0.3634 -1.0276 0.0005 33 1 -0.3634 0.5139 0.8899 34 1 3.1262 -0.7994 1.2058 35 1 1.6053 -1.7197 1.2953 36 1 3.4127 1.1819 2.4774 37 1 2.0426 1.9303 1.6223 38 1 2.0530 1.8649 3.4010 39 1 1.7281 -2.6734 7.3772 40 1 0.5415 -1.3485 7.3074 41 1 2.4118 0.2905 7.6211 42 1 3.5407 -1.0742 7.7981 43 1 4.0848 0.6970 9.0377 44 1 0.5455 0.8822 6.2036 45 1 0.4395 1.3825 4.4987 46 1 -2.6305 0.5895 6.4629 47 1 -1.5893 1.9194 5.8686 48 1 -4.0732 1.2514 4.7347 49 1 -2.7586 2.0775 3.8350 50 1 -3.3752 -0.9274 3.9780 51 1 -3.0444 0.0695 2.5264 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001122885923.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:18:13 Heat of formation + Delta-G solvation = 54.594175 kcal Electronic energy + Delta-G solvation = -31860.108066 eV Core-core repulsion = 27795.921419 eV Total energy + Delta-G solvation = -4064.186648 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.69725 -39.59890 -38.73719 -36.70013 -35.17180 -34.32000 -33.37951 -32.34807 -31.65569 -30.29349 -28.77103 -27.49452 -26.26110 -25.51581 -24.69731 -23.10013 -22.61492 -21.95089 -21.29140 -20.50050 -20.05796 -18.19745 -17.10125 -16.94997 -16.44801 -16.19835 -15.99036 -15.85887 -15.48737 -15.25306 -14.74802 -14.31581 -13.97338 -13.85463 -13.77901 -13.69163 -13.34064 -13.17604 -13.02024 -12.99604 -12.76589 -12.49099 -12.23462 -12.07889 -12.01370 -11.94277 -11.91086 -11.64749 -11.49553 -11.35336 -11.13561 -11.02106 -11.00936 -10.93672 -10.47873 -10.38522 -10.14898 -10.12696 -10.10277 -9.64013 -9.29519 -8.71852 -8.42018 -8.10426 -6.45117 -4.16313 2.05498 2.24678 2.52130 2.58324 3.19907 3.38104 3.41237 3.41395 3.59311 3.63753 3.92394 4.26481 4.39077 4.43150 4.46925 4.61743 4.62484 4.68985 4.74800 4.78192 4.81812 4.96872 5.01832 5.15153 5.22605 5.25785 5.30620 5.32760 5.42824 5.43589 5.46335 5.50344 5.51910 5.55476 5.58113 5.66284 5.70772 5.77509 5.80593 5.99059 6.14946 6.19794 6.32041 6.48619 6.54533 6.67934 6.84023 7.20299 7.28456 7.34766 7.39434 8.05227 8.35234 8.76752 9.13037 9.56577 10.95175 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.011798 B = 0.003097 C = 0.002628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2372.771201 B = 9038.718778 C =10652.665843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.007 3.993 3 H 0.115 0.885 4 C 0.214 3.786 5 N -0.433 5.433 6 C 0.081 3.919 7 N -0.443 5.443 8 C 0.018 3.982 9 C 0.346 3.654 10 N -0.324 5.324 11 N -0.295 5.295 12 C 0.209 3.791 13 C -0.023 4.023 14 C 0.020 3.980 15 C -0.605 4.605 16 H 0.052 0.948 17 C 0.018 3.982 18 N -0.909 5.909 19 Si 1.068 2.932 20 H -0.282 1.282 21 H -0.288 1.288 22 H -0.286 1.286 23 N -0.465 5.465 24 C 0.113 3.887 25 C 0.065 3.935 26 H 0.075 0.925 27 C -0.148 4.148 28 C -0.152 4.152 29 C 0.045 3.955 30 O -0.353 6.353 31 H 0.057 0.943 32 H 0.062 0.938 33 H 0.091 0.909 34 H 0.062 0.938 35 H 0.094 0.906 36 H 0.044 0.956 37 H 0.087 0.913 38 H 0.072 0.928 39 H 0.089 0.911 40 H 0.070 0.930 41 H 0.003 0.997 42 H 0.016 0.984 43 H 0.269 0.731 44 H 0.111 0.889 45 H 0.101 0.899 46 H 0.082 0.918 47 H 0.083 0.917 48 H 0.079 0.921 49 H 0.077 0.923 50 H 0.057 0.943 51 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.054 6.197 -15.621 22.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.015 4.015 3 H 0.133 0.867 4 C -0.105 4.105 5 N -0.109 5.109 6 C -0.047 4.047 7 N -0.166 5.166 8 C -0.129 4.129 9 C -0.011 4.011 10 N -0.169 5.169 11 N -0.133 5.133 12 C -0.059 4.059 13 C -0.063 4.063 14 C -0.018 4.018 15 C -0.643 4.643 16 H 0.071 0.929 17 C -0.187 4.187 18 N -0.545 5.545 19 Si 0.896 3.104 20 H -0.208 1.208 21 H -0.214 1.214 22 H -0.213 1.213 23 N -0.159 5.159 24 C -0.010 4.010 25 C 0.006 3.994 26 H 0.093 0.907 27 C -0.187 4.187 28 C -0.190 4.190 29 C -0.032 4.032 30 O -0.272 6.272 31 H 0.076 0.924 32 H 0.081 0.919 33 H 0.110 0.890 34 H 0.080 0.920 35 H 0.113 0.887 36 H 0.062 0.938 37 H 0.105 0.895 38 H 0.091 0.909 39 H 0.108 0.892 40 H 0.088 0.912 41 H 0.022 0.978 42 H 0.035 0.965 43 H 0.079 0.921 44 H 0.129 0.871 45 H 0.120 0.880 46 H 0.101 0.899 47 H 0.101 0.899 48 H 0.097 0.903 49 H 0.096 0.904 50 H 0.075 0.925 51 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -13.413 4.880 -16.090 21.508 hybrid contribution -0.899 0.658 -0.648 1.289 sum -14.312 5.537 -16.738 22.709 Atomic orbital electron populations 1.21748 0.90884 1.03504 1.03417 1.18879 0.98250 0.98824 0.85543 0.86691 1.29028 0.93245 0.93733 0.94495 1.81228 1.08838 1.09008 1.11783 1.21941 1.00163 0.97250 0.85396 1.58409 1.56608 1.03547 0.98034 1.22650 0.97404 0.89206 1.03680 1.22085 0.95669 0.97876 0.85472 1.74528 1.18034 1.11508 1.12787 1.74011 1.18330 1.23665 0.97315 1.25511 0.95342 0.88149 0.96854 1.20272 1.01028 1.03409 0.81632 1.19184 0.94554 0.93238 0.94865 1.21958 1.19697 1.31135 0.91504 0.92943 1.25851 0.93811 0.93225 1.05779 1.70787 1.27143 1.36606 1.19928 0.83549 0.75755 0.76396 0.74673 1.20759 1.21411 1.21275 1.46046 1.34031 1.27243 1.08541 1.22172 0.85658 0.89498 1.03708 1.23076 0.93433 0.98031 0.84893 0.90718 1.22927 0.96828 0.99923 0.98997 1.23108 1.00121 0.99118 0.96660 1.23563 0.83078 0.95732 1.00814 1.89079 1.23265 1.88647 1.26174 0.92366 0.91915 0.89043 0.91962 0.88742 0.93772 0.89456 0.90929 0.89219 0.91156 0.97839 0.96540 0.92081 0.87094 0.88039 0.89887 0.89865 0.90253 0.90383 0.92495 0.89002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.86 9.04 37.16 0.34 -0.53 16 2 C 0.01 0.05 2.68 -93.41 -0.25 -0.20 16 3 H 0.12 0.54 6.37 -51.93 -0.33 0.21 16 4 C 0.21 2.11 14.65 -20.76 -0.30 1.81 16 5 N -0.43 -5.58 18.54 42.15 0.78 -4.79 16 6 C 0.08 0.82 3.72 -3.82 -0.01 0.81 16 7 N -0.44 -4.86 4.20 -182.38 -0.77 -5.63 16 8 C 0.02 0.16 9.09 60.06 0.55 0.70 16 9 C 0.35 5.36 6.85 -318.87 -2.19 3.18 16 10 N -0.32 -6.19 11.48 30.31 0.35 -5.84 16 11 N -0.29 -6.22 12.18 32.99 0.40 -5.82 16 12 C 0.21 3.99 7.32 -154.02 -1.13 2.87 16 13 C -0.02 -0.46 5.45 -27.88 -0.15 -0.62 16 14 C 0.02 0.48 4.27 -27.88 -0.12 0.36 16 15 C -0.60 -16.14 9.11 -34.44 -0.31 -16.45 16 16 H 0.05 1.35 7.74 -52.49 -0.41 0.95 16 17 C 0.02 0.49 5.46 -17.82 -0.10 0.39 16 18 N -0.91 -26.96 13.65 55.43 0.76 -26.21 16 19 Si 1.07 24.12 29.90 -169.99 -5.08 19.04 16 20 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 21 H -0.29 -6.09 7.11 56.52 0.40 -5.69 16 22 H -0.29 -6.22 7.11 56.52 0.40 -5.82 16 23 N -0.47 -7.30 2.79 -114.09 -0.32 -7.62 16 24 C 0.11 1.37 5.30 -4.05 -0.02 1.34 16 25 C 0.06 0.70 3.66 -26.16 -0.10 0.60 16 26 H 0.07 0.93 7.92 -51.93 -0.41 0.52 16 27 C -0.15 -1.18 6.64 -25.20 -0.17 -1.35 16 28 C -0.15 -0.97 7.16 -24.72 -0.18 -1.15 16 29 C 0.04 0.34 7.72 38.21 0.30 0.64 16 30 O -0.35 -3.88 11.19 -35.23 -0.39 -4.28 16 31 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 32 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.09 0.60 7.75 -51.93 -0.40 0.20 16 34 H 0.06 0.69 8.11 -51.93 -0.42 0.27 16 35 H 0.09 1.12 8.04 -51.93 -0.42 0.70 16 36 H 0.04 0.43 8.13 -51.93 -0.42 0.01 16 37 H 0.09 0.46 6.45 -51.93 -0.34 0.13 16 38 H 0.07 0.66 6.67 -51.93 -0.35 0.31 16 39 H 0.09 1.80 8.14 -51.93 -0.42 1.38 16 40 H 0.07 1.25 7.80 -51.93 -0.41 0.84 16 41 H 0.00 0.08 8.01 -51.93 -0.42 -0.33 16 42 H 0.02 0.44 8.01 -51.93 -0.42 0.03 16 43 H 0.27 8.00 7.22 -40.82 -0.29 7.70 16 44 H 0.11 1.41 8.06 -51.93 -0.42 1.00 16 45 H 0.10 1.03 6.56 -51.93 -0.34 0.69 16 46 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 47 H 0.08 0.61 7.70 -51.93 -0.40 0.21 16 48 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 49 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 50 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 51 H 0.09 0.57 8.14 -51.93 -0.42 0.14 16 LS Contribution 419.03 15.07 6.31 6.31 Total: -1.00 -34.71 419.03 -10.17 -44.88 By element: Atomic # 1 Polarization: 5.91 SS G_CDS: -8.36 Total: -2.46 kcal Atomic # 6 Polarization: -3.75 SS G_CDS: -3.85 Total: -7.59 kcal Atomic # 7 Polarization: -57.11 SS G_CDS: 1.20 Total: -55.91 kcal Atomic # 8 Polarization: -3.88 SS G_CDS: -0.39 Total: -4.28 kcal Atomic # 14 Polarization: 24.12 SS G_CDS: -5.08 Total: 19.04 kcal Total LS contribution 6.31 Total: 6.31 kcal Total: -34.71 -10.17 -44.88 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001122885923.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.472 kcal (2) G-P(sol) polarization free energy of solvation -34.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.877 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds