Wall clock time and date at job start Wed Apr 1 2020 05:18:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.47314 * 2 1 4 4 C 1.47201 * 109.47165 * 239.99398 * 2 1 3 5 5 N 2.60796 * 109.47212 * 239.99543 * 2 1 3 6 6 C 1.53002 * 109.46652 * 119.99634 * 2 1 3 7 7 N 1.46904 * 109.47297 * 294.99851 * 6 2 1 8 8 C 1.46893 * 111.00183 * 293.95852 * 7 6 2 9 9 C 1.38582 * 110.99892 * 169.99890 * 7 6 2 10 10 N 1.31215 * 126.47201 * 19.70149 * 9 7 6 11 11 N 1.28534 * 109.85804 * 179.97438 * 10 9 7 12 12 C 1.30298 * 110.05211 * 0.02562 * 11 10 9 13 13 C 1.50696 * 126.34417 * 179.97438 * 12 11 10 14 14 C 1.53003 * 109.46839 * 92.50740 * 13 12 11 15 15 C 1.50706 * 109.46818 * 175.86996 * 14 13 12 16 16 H 1.07995 * 120.00151 * 0.02562 * 15 14 13 17 17 C 1.37880 * 119.99488 * 180.02562 * 15 14 13 18 18 N 1.31515 * 120.00435 * 359.97438 * 17 15 14 19 19 Si 1.86802 * 119.99412 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.46898 * 179.97438 * 19 17 15 21 21 H 1.48505 * 109.47035 * 299.99376 * 19 17 15 22 22 H 1.48494 * 109.47568 * 59.99766 * 19 17 15 23 23 N 1.36456 * 126.47147 * 199.98353 * 9 7 6 24 24 C 1.46496 * 127.13642 * 0.02562 * 23 9 7 25 25 C 1.52997 * 109.47300 * 95.46037 * 24 23 9 26 26 H 1.08998 * 109.86881 * 53.73829 * 25 24 23 27 27 C 1.54104 * 109.87823 * 174.73857 * 25 24 23 28 28 C 1.54809 * 104.18594 * 121.45487 * 27 25 24 29 29 C 1.55001 * 102.09442 * 20.88144 * 28 27 25 30 30 O 1.43744 * 109.88050 * 292.72440 * 25 24 23 31 31 H 1.09004 * 109.47205 * 60.00613 * 1 2 3 32 32 H 1.08998 * 109.47314 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.47681 * 300.00604 * 1 2 3 34 34 H 1.08999 * 109.47132 * 175.00427 * 6 2 1 35 35 H 1.08999 * 109.47490 * 55.00248 * 6 2 1 36 36 H 1.09003 * 109.46949 * 301.81296 * 8 7 6 37 37 H 1.09002 * 109.47174 * 61.81192 * 8 7 6 38 38 H 1.08995 * 109.47423 * 181.81184 * 8 7 6 39 39 H 1.08999 * 109.47446 * 332.50743 * 13 12 11 40 40 H 1.08998 * 109.47081 * 212.50504 * 13 12 11 41 41 H 1.08999 * 109.47267 * 55.87677 * 14 13 12 42 42 H 1.08997 * 109.47327 * 295.87203 * 14 13 12 43 43 H 0.96998 * 119.99763 * 359.97438 * 18 17 15 44 44 H 1.09002 * 109.46986 * 215.46054 * 24 23 9 45 45 H 1.09001 * 109.47430 * 335.45708 * 24 23 9 46 46 H 1.08997 * 110.49289 * 240.13076 * 27 25 24 47 47 H 1.08995 * 110.48718 * 2.65110 * 27 25 24 48 48 H 1.08999 * 110.91226 * 139.07819 * 28 27 25 49 49 H 1.08996 * 110.90991 * 262.64914 * 28 27 25 50 50 H 1.08998 * 110.61559 * 81.47573 * 29 28 27 51 51 H 1.09003 * 110.61828 * 204.32011 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0207 -0.6940 -1.2018 5 7 2.3993 -1.2296 -2.1293 6 6 2.0399 -0.7212 1.2493 7 7 1.6512 0.0376 2.4457 8 6 2.3339 1.3375 2.4895 9 6 1.8974 -0.6918 3.5981 10 7 2.7122 -1.7137 3.7152 11 7 2.6958 -2.1486 4.9246 12 6 1.8761 -1.4363 5.6446 13 6 1.5762 -1.6279 7.1089 14 6 2.5108 -0.7469 7.9404 15 6 2.1442 -0.8611 9.3977 16 1 1.3267 -1.4986 9.7006 17 6 2.8525 -0.1517 10.3443 18 7 3.8484 0.6242 9.9756 19 14 2.3985 -0.2938 12.1508 20 1 3.3056 0.5613 12.9578 21 1 0.9951 0.1512 12.3449 22 1 2.5344 -1.7071 12.5857 23 7 1.3343 -0.4863 4.8239 24 6 0.3546 0.5409 5.1862 25 6 -1.0555 -0.0466 5.1014 26 1 -1.1153 -0.9544 5.7017 27 6 -2.0838 0.9841 5.6065 28 6 -3.0365 1.1902 4.4038 29 6 -2.7958 -0.0971 3.5745 30 8 -1.3800 -0.3432 3.7329 31 1 -0.3634 0.5138 -0.8901 32 1 -0.3634 -1.0276 0.0005 33 1 -0.3634 0.5139 0.8899 34 1 3.1262 -0.7994 1.2058 35 1 1.6053 -1.7197 1.2953 36 1 3.4127 1.1819 2.4774 37 1 2.0426 1.9303 1.6223 38 1 2.0530 1.8649 3.4010 39 1 1.7281 -2.6734 7.3772 40 1 0.5415 -1.3485 7.3074 41 1 2.4118 0.2905 7.6211 42 1 3.5407 -1.0742 7.7981 43 1 4.0848 0.6970 9.0377 44 1 0.5455 0.8822 6.2036 45 1 0.4395 1.3825 4.4987 46 1 -2.6305 0.5895 6.4629 47 1 -1.5893 1.9194 5.8686 48 1 -4.0732 1.2514 4.7347 49 1 -2.7586 2.0775 3.8350 50 1 -3.3752 -0.9274 3.9780 51 1 -3.0444 0.0695 2.5264 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001122885923.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:18:11 Heat of formation + Delta-G solvation = 35.122324 kcal Electronic energy + Delta-G solvation = -31860.952429 eV Core-core repulsion = 27795.921419 eV Total energy + Delta-G solvation = -4065.031011 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -44.04449 -40.34264 -39.61916 -37.62863 -36.64027 -35.91076 -34.36955 -33.33443 -33.01340 -31.18920 -30.22741 -28.35952 -27.26298 -26.61655 -26.15154 -24.14631 -23.90518 -23.11553 -22.03824 -21.61037 -21.44904 -19.04577 -18.94840 -18.06160 -17.53158 -17.08277 -16.99650 -16.63910 -16.33347 -16.20167 -15.78753 -15.60369 -15.57227 -15.07843 -15.03691 -14.56826 -14.45033 -14.19166 -13.96729 -13.85123 -13.78044 -13.67738 -13.54671 -13.17682 -12.89657 -12.82482 -12.70406 -12.58750 -12.52764 -12.35482 -12.24280 -12.16787 -12.12194 -11.98529 -11.89040 -11.79705 -11.63211 -11.53364 -11.14950 -10.82298 -10.59800 -10.53055 -10.46495 -9.39685 -8.66925 -6.39006 0.75270 1.13838 1.57325 1.65420 1.68515 1.73554 1.77046 1.84037 2.50188 2.59687 2.90166 3.08184 3.18345 3.41643 3.57482 3.59660 3.67452 3.82291 3.86920 3.90425 3.96339 4.04881 4.17502 4.21844 4.35106 4.37246 4.44440 4.47448 4.49579 4.59213 4.62216 4.68820 4.72332 4.78261 4.84317 4.90368 4.91754 5.01668 5.06462 5.06904 5.11543 5.14802 5.23438 5.26076 5.36871 5.45933 5.51681 5.60066 5.94602 5.96944 6.16605 6.20122 6.51100 6.54996 7.43701 7.71983 8.73304 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.011798 B = 0.003097 C = 0.002628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2372.771201 B = 9038.718778 C =10652.665843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.022 3.978 3 H 0.153 0.847 4 C 0.239 3.761 5 N -0.487 5.487 6 C 0.082 3.918 7 N -0.428 5.428 8 C 0.012 3.988 9 C 0.365 3.635 10 N -0.363 5.363 11 N -0.333 5.333 12 C 0.193 3.807 13 C -0.007 4.007 14 C 0.030 3.970 15 C -0.613 4.613 16 H 0.062 0.938 17 C -0.036 4.036 18 N -0.938 5.938 19 Si 1.116 2.884 20 H -0.288 1.288 21 H -0.260 1.260 22 H -0.272 1.272 23 N -0.460 5.460 24 C 0.108 3.892 25 C 0.068 3.932 26 H 0.051 0.949 27 C -0.146 4.146 28 C -0.142 4.142 29 C 0.039 3.961 30 O -0.372 6.372 31 H 0.077 0.923 32 H 0.048 0.952 33 H 0.096 0.904 34 H 0.051 0.949 35 H 0.072 0.928 36 H 0.033 0.967 37 H 0.134 0.866 38 H 0.072 0.928 39 H 0.082 0.918 40 H 0.092 0.908 41 H -0.005 1.005 42 H -0.022 1.022 43 H 0.253 0.747 44 H 0.102 0.898 45 H 0.127 0.873 46 H 0.084 0.916 47 H 0.092 0.908 48 H 0.095 0.905 49 H 0.090 0.910 50 H 0.053 0.947 51 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.863 8.373 -16.153 25.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.000 4.000 3 H 0.170 0.830 4 C -0.079 4.079 5 N -0.164 5.164 6 C -0.046 4.046 7 N -0.152 5.152 8 C -0.134 4.134 9 C 0.008 3.992 10 N -0.208 5.208 11 N -0.172 5.172 12 C -0.077 4.077 13 C -0.046 4.046 14 C -0.008 4.008 15 C -0.651 4.651 16 H 0.081 0.919 17 C -0.233 4.233 18 N -0.575 5.575 19 Si 0.937 3.063 20 H -0.214 1.214 21 H -0.185 1.185 22 H -0.197 1.197 23 N -0.153 5.153 24 C -0.014 4.014 25 C 0.009 3.991 26 H 0.069 0.931 27 C -0.184 4.184 28 C -0.179 4.179 29 C -0.038 4.038 30 O -0.292 6.292 31 H 0.096 0.904 32 H 0.067 0.933 33 H 0.115 0.885 34 H 0.070 0.930 35 H 0.091 0.909 36 H 0.052 0.948 37 H 0.152 0.848 38 H 0.090 0.910 39 H 0.101 0.899 40 H 0.110 0.890 41 H 0.013 0.987 42 H -0.004 1.004 43 H 0.062 0.938 44 H 0.120 0.880 45 H 0.145 0.855 46 H 0.103 0.897 47 H 0.110 0.890 48 H 0.113 0.887 49 H 0.109 0.891 50 H 0.071 0.929 51 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -16.256 7.060 -16.651 24.318 hybrid contribution -0.054 -0.002 -0.588 0.590 sum -16.310 7.058 -17.239 24.759 Atomic orbital electron populations 1.21737 0.89664 1.03039 1.04621 1.18980 0.98913 0.99649 0.82454 0.82956 1.29455 0.91758 0.92477 0.94210 1.81258 1.10686 1.10678 1.13755 1.21907 0.99518 0.96866 0.86350 1.58651 1.56288 1.03875 0.96403 1.22877 0.96693 0.87882 1.05962 1.22564 0.93521 0.96635 0.86488 1.74430 1.20296 1.13785 1.12241 1.73889 1.19489 1.25264 0.98513 1.25171 0.96232 0.89540 0.96725 1.19952 1.00969 1.01932 0.81797 1.18980 0.93379 0.93436 0.94990 1.22376 1.19542 1.30538 0.92616 0.91941 1.27409 0.93128 0.92465 1.10321 1.70927 1.28971 1.38672 1.18909 0.82950 0.76762 0.77058 0.69499 1.21418 1.18472 1.19748 1.46161 1.34093 1.26992 1.08023 1.22478 0.85644 0.89367 1.03882 1.22965 0.93227 0.97866 0.85046 0.93055 1.22937 0.96414 0.99287 0.99775 1.23087 1.00542 0.98725 0.95551 1.23769 0.81328 0.96397 1.02257 1.89050 1.25330 1.88911 1.25879 0.90388 0.93327 0.88490 0.93040 0.90929 0.94816 0.84768 0.90956 0.89911 0.88951 0.98685 1.00388 0.93759 0.87960 0.85528 0.89713 0.88982 0.88690 0.89138 0.92855 0.87187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.23 9.04 71.98 0.65 -0.58 16 2 C 0.02 0.24 2.68 -12.60 -0.03 0.21 16 3 H 0.15 0.67 6.37 -2.39 -0.02 0.66 16 4 C 0.24 4.36 14.65 89.44 1.31 5.67 16 5 N -0.49 -12.30 18.54 20.01 0.37 -11.93 16 6 C 0.08 1.57 3.72 86.30 0.32 1.89 16 7 N -0.43 -8.66 4.20 -730.93 -3.07 -11.73 16 8 C 0.01 0.18 9.09 127.69 1.16 1.34 16 9 C 0.37 11.33 6.85 260.11 1.78 13.11 16 10 N -0.36 -14.37 11.48 -58.00 -0.67 -15.04 16 11 N -0.33 -14.74 12.18 -49.54 -0.60 -15.34 16 12 C 0.19 7.63 7.32 137.64 1.01 8.63 16 13 C -0.01 -0.27 5.45 29.85 0.16 -0.11 16 14 C 0.03 1.53 4.27 29.85 0.13 1.66 16 15 C -0.61 -33.01 9.11 25.60 0.23 -32.78 16 16 H 0.06 3.18 7.74 -2.91 -0.02 3.16 16 17 C -0.04 -1.99 5.46 84.66 0.46 -1.52 16 18 N -0.94 -56.93 13.65 21.45 0.29 -56.63 16 19 Si 1.12 47.84 29.90 68.60 2.05 49.89 16 20 H -0.29 -12.59 7.11 99.48 0.71 -11.88 16 21 H -0.26 -9.95 7.11 99.48 0.71 -9.24 16 22 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 23 N -0.46 -14.49 2.79 -514.87 -1.44 -15.92 16 24 C 0.11 2.49 5.30 86.38 0.46 2.95 16 25 C 0.07 1.38 3.66 30.97 0.11 1.49 16 26 H 0.05 1.27 7.92 -2.39 -0.02 1.25 16 27 C -0.15 -1.97 6.64 31.59 0.21 -1.76 16 28 C -0.14 -1.31 7.16 31.90 0.23 -1.09 16 29 C 0.04 0.49 7.72 72.67 0.56 1.05 16 30 O -0.37 -7.49 11.19 -148.98 -1.67 -9.15 16 31 H 0.08 0.48 8.14 -2.38 -0.02 0.46 16 32 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 33 H 0.10 0.87 7.75 -2.39 -0.02 0.85 16 34 H 0.05 1.11 8.11 -2.39 -0.02 1.09 16 35 H 0.07 1.73 8.04 -2.39 -0.02 1.71 16 36 H 0.03 0.59 8.13 -2.39 -0.02 0.57 16 37 H 0.13 0.71 6.45 -2.39 -0.02 0.69 16 38 H 0.07 1.10 6.67 -2.39 -0.02 1.08 16 39 H 0.08 3.45 8.14 -2.39 -0.02 3.43 16 40 H 0.09 3.29 7.80 -2.39 -0.02 3.27 16 41 H -0.01 -0.26 8.01 -2.39 -0.02 -0.28 16 42 H -0.02 -1.28 8.01 -2.39 -0.02 -1.30 16 43 H 0.25 15.72 7.22 -92.71 -0.67 15.05 16 44 H 0.10 2.56 8.06 -2.39 -0.02 2.54 16 45 H 0.13 2.25 6.56 -2.39 -0.02 2.23 16 46 H 0.08 1.12 8.14 -2.39 -0.02 1.11 16 47 H 0.09 1.09 7.70 -2.39 -0.02 1.07 16 48 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 49 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 50 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 51 H 0.11 0.99 8.14 -2.39 -0.02 0.97 16 Total: -1.00 -80.00 419.03 5.05 -74.95 By element: Atomic # 1 Polarization: 9.73 SS G_CDS: 1.02 Total: 10.75 kcal Atomic # 6 Polarization: -8.59 SS G_CDS: 8.75 Total: 0.16 kcal Atomic # 7 Polarization: -121.49 SS G_CDS: -5.11 Total: -126.60 kcal Atomic # 8 Polarization: -7.49 SS G_CDS: -1.67 Total: -9.15 kcal Atomic # 14 Polarization: 47.84 SS G_CDS: 2.05 Total: 49.89 kcal Total: -80.00 5.05 -74.95 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001122885923.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.070 kcal (2) G-P(sol) polarization free energy of solvation -79.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.948 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds