Wall clock time and date at job start Wed Apr 1 2020 05:10:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09006 * 109.46566 * 2 1 4 4 C 1.50696 * 109.47131 * 240.00156 * 2 1 3 5 5 H 1.07996 * 120.00198 * 239.99836 * 4 2 1 6 6 C 1.37882 * 120.00192 * 59.99811 * 4 2 1 7 7 N 1.31516 * 120.00026 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99988 * 179.97438 * 6 4 2 9 9 H 1.48507 * 109.46827 * 90.00160 * 8 6 4 10 10 H 1.48500 * 109.47178 * 209.99731 * 8 6 4 11 11 H 1.48496 * 109.47468 * 330.00689 * 8 6 4 12 12 N 1.46896 * 109.47079 * 119.99767 * 2 1 3 13 13 C 1.46905 * 110.99807 * 58.95988 * 12 2 1 14 14 C 1.38488 * 111.00278 * 295.00063 * 12 2 1 15 15 N 1.31301 * 126.35113 * 70.53100 * 14 12 2 16 16 N 1.28503 * 110.15422 * 180.02562 * 15 14 12 17 17 C 1.31480 * 109.92616 * 359.75603 * 16 15 14 18 18 C 1.47228 * 126.50235 * 180.23755 * 17 16 15 19 19 C 1.36521 * 126.09080 * 14.86379 * 18 17 16 20 20 C 1.40349 * 107.32323 * 179.84692 * 19 18 17 21 21 C 1.35105 * 107.74823 * 0.41351 * 20 19 18 22 22 N 1.36344 * 108.53569 * 359.74515 * 21 20 19 23 23 H 0.97000 * 125.70780 * 179.97438 * 22 21 20 24 24 N 1.36616 * 126.35826 * 250.55620 * 14 12 2 25 25 C 1.46500 * 127.18062 * 359.94028 * 24 14 12 26 26 C 1.53004 * 109.46751 * 89.97538 * 25 24 14 27 27 C 1.53002 * 109.46946 * 180.02562 * 26 25 24 28 28 C 1.53000 * 109.47056 * 180.02562 * 27 26 25 29 29 C 1.53002 * 109.47056 * 180.02562 * 28 27 26 30 30 O 1.42901 * 109.46879 * 179.97438 * 29 28 27 31 31 H 1.08998 * 109.46889 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47110 * 299.99741 * 1 2 3 33 33 H 1.09002 * 109.46727 * 59.99994 * 1 2 3 34 34 H 0.96994 * 119.99811 * 179.97438 * 7 6 4 35 35 H 1.09007 * 109.46908 * 290.51227 * 13 12 2 36 36 H 1.08994 * 109.47272 * 50.51436 * 13 12 2 37 37 H 1.09000 * 109.47115 * 170.51501 * 13 12 2 38 38 H 1.07999 * 126.34010 * 359.97438 * 19 18 17 39 39 H 1.08001 * 126.12117 * 180.13945 * 20 19 18 40 40 H 1.08002 * 125.72796 * 179.71192 * 21 20 19 41 41 H 1.08997 * 109.47262 * 209.96962 * 25 24 14 42 42 H 1.09002 * 109.47378 * 329.97814 * 25 24 14 43 43 H 1.08995 * 109.47478 * 299.99523 * 26 25 24 44 44 H 1.08994 * 109.47553 * 60.00040 * 26 25 24 45 45 H 1.09007 * 109.46898 * 299.99379 * 27 26 25 46 46 H 1.08997 * 109.47601 * 59.99642 * 27 26 25 47 47 H 1.09007 * 109.46939 * 299.99564 * 28 27 26 48 48 H 1.08994 * 109.47778 * 59.99636 * 28 27 26 49 49 H 1.08997 * 109.47002 * 299.99042 * 29 28 27 50 50 H 1.08997 * 109.47601 * 59.99299 * 29 28 27 51 51 H 0.96707 * 113.99908 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5884 -1.1314 6 6 1.6993 -0.2393 -2.4828 7 7 0.9436 0.8303 -2.6035 8 14 2.3226 -1.1195 -4.0080 9 1 1.3448 -2.1615 -4.4124 10 1 2.4873 -0.1402 -5.1121 11 1 3.6308 -1.7566 -3.7120 12 7 2.0197 -0.6924 1.1994 13 6 1.5284 -2.0761 1.2459 14 6 1.6700 -0.0027 2.3483 15 7 0.4615 0.1148 2.8481 16 7 0.4928 0.8214 3.9209 17 6 1.7274 1.1951 4.1754 18 6 2.1783 2.0103 5.3155 19 6 1.4604 2.2802 6.4449 20 6 2.2634 3.0848 7.2682 21 6 3.4339 3.2920 6.6261 22 7 3.3935 2.6392 5.4298 23 1 4.1042 2.6223 4.7698 24 7 2.5182 0.6822 3.1716 25 6 3.9676 0.8338 3.0213 26 6 4.2660 2.0811 2.1869 27 6 5.7796 2.2392 2.0294 28 6 6.0780 3.4869 1.1956 29 6 7.5917 3.6446 1.0375 30 8 7.8703 4.8095 0.2582 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5139 -0.8900 34 1 0.7096 1.1618 -3.4844 35 1 0.4545 -2.0743 1.4330 36 1 1.7304 -2.5656 0.2932 37 1 2.0357 -2.6151 2.0460 38 1 0.4606 1.9365 6.6652 39 1 1.9922 3.4727 8.2389 40 1 4.2622 3.8771 6.9978 41 1 4.4261 0.9365 4.0048 42 1 4.3748 -0.0444 2.5203 43 1 3.8075 1.9786 1.2034 44 1 3.8588 2.9594 2.6878 45 1 6.2385 2.3417 3.0128 46 1 6.1865 1.3610 1.5283 47 1 5.6191 3.3849 0.2121 48 1 5.6713 4.3650 1.6970 49 1 8.0510 3.7465 2.0207 50 1 7.9981 2.7664 0.5358 51 1 8.8131 4.9724 0.1175 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001541802597.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:10:01 Heat of formation + Delta-G solvation = 79.863578 kcal Electronic energy + Delta-G solvation = -31705.342744 eV Core-core repulsion = 27642.251859 eV Total energy + Delta-G solvation = -4063.090884 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.55090 -40.91850 -37.63113 -37.24901 -36.28883 -33.90007 -32.91876 -31.13383 -30.86365 -30.17984 -28.81330 -27.60121 -26.09394 -25.25085 -25.21025 -22.83330 -22.19193 -21.55608 -21.34868 -20.76231 -20.08894 -19.24877 -18.09785 -17.54500 -16.59265 -16.27586 -16.11411 -15.96303 -15.24552 -15.02434 -14.74406 -14.43957 -14.22412 -14.15003 -13.75199 -13.62702 -13.31156 -12.99546 -12.88207 -12.63100 -12.36688 -12.25924 -12.24343 -11.78096 -11.60117 -11.50116 -11.32356 -11.26547 -11.08231 -10.97955 -10.88308 -10.81771 -10.60881 -10.26815 -10.21091 -10.19508 -10.00345 -9.81653 -9.24035 -9.02306 -8.95065 -8.49809 -7.89149 -7.59296 -6.11421 -4.18201 1.42148 2.47007 2.47810 2.92464 2.96151 3.24432 3.31666 3.33510 3.49699 3.88856 4.28403 4.36385 4.48953 4.58165 4.67727 4.73059 4.78730 4.96799 5.00284 5.08015 5.16646 5.20644 5.33214 5.35156 5.37835 5.42589 5.55388 5.61899 5.70635 5.75887 5.95932 5.99686 6.02055 6.09880 6.17317 6.27953 6.33857 6.35174 6.57761 6.78441 6.82146 6.86527 6.97335 7.02403 7.12767 7.30977 7.36814 7.46639 7.59613 7.70258 7.86598 8.21256 8.39961 8.84864 9.13796 9.46874 10.95145 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.007325 B = 0.004195 C = 0.002857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3821.375230 B = 6673.685752 C = 9796.814275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.226 3.774 3 H 0.036 0.964 4 C -0.509 4.509 5 H 0.066 0.934 6 C 0.064 3.936 7 N -0.887 5.887 8 Si 0.899 3.101 9 H -0.280 1.280 10 H -0.286 1.286 11 H -0.273 1.273 12 N -0.470 5.470 13 C 0.044 3.956 14 C 0.387 3.613 15 N -0.308 5.308 16 N -0.265 5.265 17 C 0.220 3.780 18 C 0.088 3.912 19 C -0.137 4.137 20 C -0.200 4.200 21 C 0.001 3.999 22 N -0.559 5.559 23 H 0.412 0.588 24 N -0.473 5.473 25 C 0.113 3.887 26 C -0.141 4.141 27 C -0.110 4.110 28 C -0.122 4.122 29 C 0.076 3.924 30 O -0.575 6.575 31 H 0.032 0.968 32 H 0.033 0.967 33 H 0.086 0.914 34 H 0.263 0.737 35 H 0.042 0.958 36 H 0.092 0.908 37 H 0.044 0.956 38 H 0.147 0.853 39 H 0.141 0.859 40 H 0.168 0.832 41 H 0.077 0.923 42 H 0.110 0.890 43 H 0.093 0.907 44 H 0.062 0.938 45 H 0.061 0.939 46 H 0.076 0.924 47 H 0.078 0.922 48 H 0.068 0.932 49 H 0.042 0.958 50 H 0.047 0.953 51 H 0.378 0.622 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.498 4.480 14.667 20.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.122 3.878 3 H 0.053 0.947 4 C -0.548 4.548 5 H 0.084 0.916 6 C -0.139 4.139 7 N -0.525 5.525 8 Si 0.727 3.273 9 H -0.206 1.206 10 H -0.212 1.212 11 H -0.198 1.198 12 N -0.197 5.197 13 C -0.104 4.104 14 C 0.032 3.968 15 N -0.152 5.152 16 N -0.108 5.108 17 C -0.044 4.044 18 C -0.026 4.026 19 C -0.164 4.164 20 C -0.225 4.225 21 C -0.132 4.132 22 N -0.158 5.158 23 H 0.250 0.750 24 N -0.167 5.167 25 C -0.011 4.011 26 C -0.179 4.179 27 C -0.148 4.148 28 C -0.160 4.160 29 C -0.001 4.001 30 O -0.380 6.380 31 H 0.051 0.949 32 H 0.052 0.948 33 H 0.105 0.895 34 H 0.073 0.927 35 H 0.060 0.940 36 H 0.110 0.890 37 H 0.063 0.937 38 H 0.165 0.835 39 H 0.159 0.841 40 H 0.186 0.814 41 H 0.095 0.905 42 H 0.129 0.871 43 H 0.111 0.889 44 H 0.080 0.920 45 H 0.080 0.920 46 H 0.094 0.906 47 H 0.097 0.903 48 H 0.087 0.913 49 H 0.061 0.939 50 H 0.066 0.934 51 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges 11.900 4.419 14.470 19.249 hybrid contribution 1.902 -0.231 -1.364 2.352 sum 13.802 4.188 13.106 19.488 Atomic orbital electron populations 1.22449 0.98836 1.00241 1.01793 1.19402 0.91384 0.93783 0.83235 0.94666 1.20978 1.31686 1.12955 0.89160 0.91606 1.24902 0.94962 0.95019 0.98986 1.69905 1.36217 1.22643 1.23731 0.86479 0.79206 0.79301 0.82318 1.20581 1.21225 1.19828 1.59413 1.59257 1.02758 0.98239 1.22270 0.98666 0.86872 1.02568 1.22890 0.84633 0.95792 0.93520 1.74783 1.17695 1.17160 1.05513 1.74395 1.14619 1.11496 1.10249 1.21521 0.88549 1.02806 0.91537 1.16998 0.87866 1.03092 0.94600 1.20966 1.00361 1.02400 0.92687 1.20860 0.94563 1.05560 1.01477 1.21942 1.01259 1.02947 0.87034 1.42305 1.14499 1.41232 1.17739 0.74991 1.46513 1.08953 1.40854 1.20378 1.21873 0.76889 1.01573 1.00727 1.22043 0.96888 0.96226 1.02783 1.21387 0.94826 0.98632 0.99984 1.21509 0.94553 0.98001 1.01931 1.22196 0.96644 0.87436 0.93859 1.86511 1.29851 1.46601 1.75036 0.94854 0.94823 0.89496 0.92735 0.93951 0.88971 0.93711 0.83549 0.84080 0.81440 0.90468 0.87127 0.88887 0.91976 0.92048 0.90566 0.90342 0.91337 0.93934 0.93440 0.77549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.40 8.20 37.16 0.30 -4.10 16 2 C 0.23 5.57 2.31 -68.87 -0.16 5.41 16 3 H 0.04 0.97 8.11 -51.93 -0.42 0.55 16 4 C -0.51 -13.14 7.80 -34.44 -0.27 -13.41 16 5 H 0.07 1.66 6.81 -52.49 -0.36 1.30 16 6 C 0.06 1.69 5.30 -17.82 -0.09 1.59 16 7 N -0.89 -24.68 11.32 55.43 0.63 -24.05 16 8 Si 0.90 20.49 29.54 -169.99 -5.02 15.46 16 9 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 10 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 11 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 12 N -0.47 -9.94 4.77 -176.03 -0.84 -10.78 16 13 C 0.04 0.85 8.65 60.07 0.52 1.37 16 14 C 0.39 7.95 6.21 -318.68 -1.98 5.97 16 15 N -0.31 -6.83 9.68 30.34 0.29 -6.54 16 16 N -0.27 -5.51 12.22 32.50 0.40 -5.11 16 17 C 0.22 3.89 7.90 -153.74 -1.21 2.67 16 18 C 0.09 1.26 6.90 -82.38 -0.57 0.69 16 19 C -0.14 -1.82 10.80 -39.41 -0.43 -2.25 16 20 C -0.20 -2.09 10.83 -39.90 -0.43 -2.53 16 21 C 0.00 0.01 11.92 -16.66 -0.20 -0.19 16 22 N -0.56 -6.06 5.66 -9.51 -0.05 -6.11 16 23 H 0.41 3.72 5.62 -40.82 -0.23 3.49 16 24 N -0.47 -8.09 2.84 -114.76 -0.33 -8.42 16 25 C 0.11 1.43 5.45 -4.04 -0.02 1.40 16 26 C -0.14 -1.71 5.13 -26.73 -0.14 -1.85 16 27 C -0.11 -1.00 5.21 -26.73 -0.14 -1.14 16 28 C -0.12 -1.28 5.58 -26.73 -0.15 -1.42 16 29 C 0.08 0.68 7.05 37.16 0.26 0.94 16 30 O -0.57 -5.87 13.66 -35.23 -0.48 -6.35 16 31 H 0.03 0.81 6.61 -51.93 -0.34 0.47 16 32 H 0.03 0.85 5.94 -51.93 -0.31 0.54 16 33 H 0.09 2.40 6.07 -51.93 -0.32 2.08 16 34 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 35 H 0.04 0.86 6.54 -51.93 -0.34 0.52 16 36 H 0.09 1.82 6.29 -51.93 -0.33 1.49 16 37 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 38 H 0.15 1.93 8.06 -52.49 -0.42 1.50 16 39 H 0.14 1.14 8.06 -52.49 -0.42 0.72 16 40 H 0.17 0.92 8.06 -52.49 -0.42 0.50 16 41 H 0.08 0.76 6.36 -51.93 -0.33 0.43 16 42 H 0.11 1.42 8.14 -51.93 -0.42 1.00 16 43 H 0.09 1.49 8.14 -51.93 -0.42 1.07 16 44 H 0.06 0.74 7.38 -51.93 -0.38 0.36 16 45 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 46 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 47 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 48 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 49 H 0.04 0.30 8.14 -51.93 -0.42 -0.13 16 50 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 51 H 0.38 1.99 9.12 45.56 0.42 2.41 16 LS Contribution 406.89 15.07 6.13 6.13 Total: -1.00 -32.88 406.89 -11.12 -44.00 By element: Atomic # 1 Polarization: 15.74 SS G_CDS: -7.15 Total: 8.60 kcal Atomic # 6 Polarization: -2.12 SS G_CDS: -4.70 Total: -6.82 kcal Atomic # 7 Polarization: -61.12 SS G_CDS: 0.10 Total: -61.02 kcal Atomic # 8 Polarization: -5.87 SS G_CDS: -0.48 Total: -6.35 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.46 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -32.88 -11.12 -44.00 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001541802597.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.862 kcal (2) G-P(sol) polarization free energy of solvation -32.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.999 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds