Wall clock time and date at job start Wed Apr 1 2020 05:08:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46499 * 109.47147 * 2 1 4 4 C 1.46506 * 119.99936 * 89.99619 * 3 2 1 5 5 C 1.50703 * 109.46877 * 90.00092 * 4 3 2 6 6 H 1.08005 * 119.99817 * 0.02562 * 5 4 3 7 7 C 1.37871 * 120.00081 * 179.97438 * 5 4 3 8 8 N 1.31520 * 119.99848 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 120.00321 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.46844 * 60.00490 * 9 7 5 11 11 H 1.48496 * 109.47153 * 180.02562 * 9 7 5 12 12 H 1.48499 * 109.47045 * 300.00555 * 9 7 5 13 13 C 1.34773 * 120.00036 * 270.27655 * 3 2 1 14 14 O 1.21281 * 120.00220 * 179.72597 * 13 3 2 15 15 C 1.50706 * 120.00080 * 359.72107 * 13 3 2 16 16 N 1.46889 * 109.47109 * 180.02562 * 15 13 3 17 17 C 1.46959 * 111.00102 * 293.79785 * 16 15 13 18 18 C 1.53049 * 109.36362 * 176.81680 * 17 16 15 19 19 N 1.46955 * 109.36833 * 58.40206 * 18 17 16 20 20 C 1.38540 * 111.00055 * 176.80896 * 19 18 17 21 21 C 1.39665 * 120.53296 * 303.80140 * 20 19 18 22 22 C 1.38071 * 118.33378 * 180.02562 * 21 20 19 23 23 N 1.32584 * 119.20067 * 359.97438 * 22 21 20 24 24 C 1.31761 * 121.01300 * 0.02562 * 23 22 21 25 25 C 1.50691 * 119.08251 * 180.02562 * 24 23 22 26 26 N 1.31788 * 121.82978 * 359.70886 * 24 23 22 27 27 C 1.46955 * 110.87907 * 300.67589 * 19 18 17 28 28 C 1.46965 * 110.99870 * 170.00198 * 16 15 13 29 29 H 1.08997 * 109.47273 * 60.00010 * 1 2 3 30 30 H 1.09005 * 109.47395 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47272 * 300.00321 * 1 2 3 32 32 H 1.08994 * 109.47531 * 239.99672 * 2 1 3 33 33 H 1.09005 * 109.46544 * 119.99607 * 2 1 3 34 34 H 1.09000 * 109.46803 * 209.99571 * 4 3 2 35 35 H 1.09000 * 109.47214 * 330.00364 * 4 3 2 36 36 H 0.96998 * 119.99944 * 179.97438 * 8 7 5 37 37 H 1.09004 * 109.46762 * 300.00389 * 15 13 3 38 38 H 1.08998 * 109.46924 * 59.99727 * 15 13 3 39 39 H 1.09007 * 109.48694 * 296.78149 * 17 16 15 40 40 H 1.09001 * 109.48949 * 56.84570 * 17 16 15 41 41 H 1.09002 * 109.48821 * 298.42916 * 18 17 16 42 42 H 1.09009 * 109.50251 * 178.38247 * 18 17 16 43 43 H 1.07997 * 120.83480 * 359.97438 * 21 20 19 44 44 H 1.07999 * 120.40251 * 180.02562 * 22 21 20 45 45 H 1.09002 * 109.47156 * 90.00283 * 25 24 23 46 46 H 1.09007 * 109.47125 * 209.99591 * 25 24 23 47 47 H 1.08994 * 109.47422 * 329.99630 * 25 24 23 48 48 H 1.08990 * 109.49170 * 299.35491 * 27 19 18 49 49 H 1.08995 * 109.50433 * 179.29789 * 27 19 18 50 50 H 1.08995 * 109.48409 * 303.15092 * 28 16 15 51 51 H 1.08997 * 109.48809 * 63.21611 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2624 2.0718 1.2688 5 6 3.6857 1.8350 1.7039 6 1 4.3428 1.2309 1.0958 7 6 4.1493 2.3905 2.8775 8 7 3.3493 3.1266 3.6176 9 14 5.9133 2.0964 3.4172 10 1 6.8412 2.6187 2.3821 11 1 6.1607 2.7965 4.7032 12 1 6.1400 0.6397 3.5955 13 6 2.2377 2.0184 -1.1671 14 8 2.6372 3.1635 -1.1672 15 6 1.9865 1.3080 -2.4723 16 7 2.2990 2.2100 -3.5888 17 6 1.3654 3.3443 -3.6266 18 6 1.7721 4.2990 -4.7515 19 7 1.7686 3.5750 -6.0303 20 6 2.0632 4.4257 -7.0833 21 6 1.2973 5.5724 -7.3047 22 6 1.6308 6.3880 -8.3677 23 7 2.6591 6.0594 -9.1374 24 6 3.3624 4.9703 -8.9023 25 6 4.5229 4.6388 -9.8045 26 7 3.0829 4.1662 -7.8963 27 6 2.7023 2.4407 -5.9925 28 6 2.2955 1.4859 -4.8676 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 2.0955 3.1411 1.1383 35 1 1.5816 1.6877 2.0284 36 1 3.6753 3.5170 4.4435 37 1 2.6203 0.4232 -2.5321 38 1 0.9397 1.0094 -2.5279 39 1 0.3550 2.9777 -3.8082 40 1 1.3953 3.8718 -2.6732 41 1 2.7719 4.6867 -4.5558 42 1 1.0643 5.1266 -4.8002 43 1 0.4646 5.8147 -6.6611 44 1 1.0614 7.2833 -8.5693 45 1 5.4309 5.0962 -9.4116 46 1 4.6511 3.5572 -9.8491 47 1 4.3263 5.0228 -10.8054 48 1 3.7125 2.8072 -5.8109 49 1 2.6727 1.9131 -6.9458 50 1 3.0035 0.6587 -4.8190 51 1 1.2957 1.0983 -5.0633 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183796070.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:08:35 Heat of formation + Delta-G solvation = 19.676624 kcal Electronic energy + Delta-G solvation = -30833.545825 eV Core-core repulsion = 26767.845038 eV Total energy + Delta-G solvation = -4065.700786 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.31834 -41.03024 -39.85490 -37.20698 -36.60388 -34.89951 -34.48144 -33.26877 -32.13756 -31.60244 -30.36138 -29.37753 -28.63739 -26.37992 -25.20874 -24.66435 -24.18994 -23.64809 -22.99477 -21.07090 -19.88226 -18.82319 -18.59879 -18.41886 -17.84003 -17.29936 -16.70023 -16.52865 -16.41256 -16.36561 -15.84014 -15.78576 -15.60575 -15.39738 -15.09288 -14.77059 -14.62081 -14.38989 -14.21870 -14.11370 -13.58515 -13.48102 -13.29912 -13.23518 -13.13299 -13.08014 -12.90300 -12.63726 -12.51228 -12.39007 -12.27219 -12.15756 -12.13486 -11.97659 -11.78558 -11.71859 -11.65870 -10.81022 -10.63484 -10.46262 -10.30978 -9.59252 -9.43107 -9.24942 -8.21483 -6.35855 -0.07805 0.09014 1.35884 1.40163 1.47227 1.89296 2.20969 2.24705 2.40894 2.75696 2.92792 3.04892 3.07858 3.23895 3.64889 3.68513 3.81259 3.99280 4.09343 4.13940 4.15432 4.20606 4.27111 4.34143 4.40272 4.44067 4.45891 4.49634 4.52517 4.66489 4.70278 4.72512 4.76443 4.82047 4.85899 4.95838 4.98933 5.01285 5.04483 5.07635 5.23699 5.29377 5.39926 5.42680 5.59800 5.78562 5.89000 5.96173 6.05160 6.08813 6.13394 6.72498 6.86546 7.13553 7.30489 7.56789 8.85034 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.014804 B = 0.002252 C = 0.002122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1890.952875 B =12428.158511 C =13194.650983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.100 3.900 3 N -0.605 5.605 4 C 0.265 3.735 5 C -0.540 4.540 6 H 0.052 0.948 7 C 0.007 3.993 8 N -0.929 5.929 9 Si 0.965 3.035 10 H -0.280 1.280 11 H -0.279 1.279 12 H -0.260 1.260 13 C 0.496 3.504 14 O -0.579 6.579 15 C 0.054 3.946 16 N -0.547 5.547 17 C 0.060 3.940 18 C 0.076 3.924 19 N -0.472 5.472 20 C 0.342 3.658 21 C -0.251 4.251 22 C 0.163 3.837 23 N -0.560 5.560 24 C 0.324 3.676 25 C -0.082 4.082 26 N -0.573 5.573 27 C 0.076 3.924 28 C 0.060 3.940 29 H 0.059 0.941 30 H 0.094 0.906 31 H 0.036 0.964 32 H 0.101 0.899 33 H 0.070 0.930 34 H -0.005 1.005 35 H 0.020 0.980 36 H 0.266 0.734 37 H 0.123 0.877 38 H 0.088 0.912 39 H 0.055 0.945 40 H 0.076 0.924 41 H 0.033 0.967 42 H 0.108 0.892 43 H 0.168 0.832 44 H 0.203 0.797 45 H 0.091 0.909 46 H 0.090 0.910 47 H 0.097 0.903 48 H 0.040 0.960 49 H 0.098 0.902 50 H 0.103 0.897 51 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.009 -3.599 -24.816 26.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.023 4.023 3 N -0.337 5.337 4 C 0.144 3.856 5 C -0.578 4.578 6 H 0.070 0.930 7 C -0.192 4.192 8 N -0.569 5.569 9 Si 0.789 3.211 10 H -0.205 1.205 11 H -0.204 1.204 12 H -0.184 1.184 13 C 0.285 3.715 14 O -0.459 6.459 15 C -0.076 4.076 16 N -0.273 5.273 17 C -0.068 4.068 18 C -0.050 4.050 19 N -0.189 5.189 20 C 0.102 3.898 21 C -0.276 4.276 22 C 0.000 4.000 23 N -0.277 5.277 24 C 0.056 3.944 25 C -0.140 4.140 26 N -0.295 5.295 27 C -0.051 4.051 28 C -0.067 4.067 29 H 0.078 0.922 30 H 0.113 0.887 31 H 0.056 0.944 32 H 0.119 0.881 33 H 0.089 0.911 34 H 0.014 0.986 35 H 0.038 0.962 36 H 0.075 0.925 37 H 0.141 0.859 38 H 0.106 0.894 39 H 0.073 0.927 40 H 0.094 0.906 41 H 0.052 0.948 42 H 0.126 0.874 43 H 0.185 0.815 44 H 0.220 0.780 45 H 0.110 0.890 46 H 0.109 0.891 47 H 0.116 0.884 48 H 0.059 0.941 49 H 0.116 0.884 50 H 0.121 0.879 51 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -6.083 -3.183 -25.137 26.057 hybrid contribution 0.037 0.439 1.569 1.629 sum -6.046 -2.744 -23.568 24.486 Atomic orbital electron populations 1.22147 0.94672 1.03431 1.01554 1.21737 0.95190 0.81427 1.03917 1.48289 1.64214 1.15062 1.06173 1.18641 0.95046 0.91458 0.80487 1.21686 0.97969 1.31810 1.06371 0.92986 1.25840 1.02243 0.94579 0.96533 1.70044 1.37733 1.34283 1.14816 0.85510 0.79232 0.79043 0.77284 1.20521 1.20404 1.18402 1.21178 0.77343 0.86748 0.86244 1.90608 1.47228 1.20397 1.87699 1.21960 1.02779 0.95630 0.87216 1.61704 1.52578 1.09857 1.03133 1.22193 0.93824 0.92429 0.98388 1.22249 1.01356 0.96340 0.85019 1.59180 1.48321 1.08822 1.02619 1.20425 0.88180 0.89525 0.91683 1.22625 1.04652 0.96657 1.03656 1.23624 0.90752 0.98066 0.87510 1.68356 1.09068 1.18863 1.31444 1.23673 0.95034 0.85583 0.90126 1.20647 0.92252 1.03705 0.97397 1.68254 1.17518 1.35114 1.08573 1.22029 0.93169 0.90414 0.99473 1.22312 1.02108 0.95925 0.86360 0.92213 0.88681 0.94426 0.88079 0.91134 0.98644 0.96197 0.92481 0.85917 0.89393 0.92737 0.90554 0.94815 0.87371 0.81495 0.78049 0.89006 0.89105 0.88440 0.94117 0.88409 0.87863 0.92346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.71 10.24 71.98 0.74 -2.98 16 2 C 0.10 2.88 5.93 86.38 0.51 3.39 16 3 N -0.61 -24.95 2.46 -826.13 -2.03 -26.98 16 4 C 0.27 14.26 5.17 85.63 0.44 14.70 16 5 C -0.54 -31.23 9.39 25.60 0.24 -30.99 16 6 H 0.05 2.98 7.81 -2.91 -0.02 2.96 16 7 C 0.01 0.40 5.46 84.65 0.46 0.86 16 8 N -0.93 -56.59 13.29 21.45 0.28 -56.31 16 9 Si 0.96 45.36 29.54 68.60 2.03 47.38 16 10 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 11 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 12 H -0.26 -11.40 7.11 99.48 0.71 -10.69 16 13 C 0.50 19.98 7.37 87.66 0.65 20.63 16 14 O -0.58 -29.41 13.91 -3.03 -0.04 -29.45 16 15 C 0.05 1.45 4.00 85.56 0.34 1.80 16 16 N -0.55 -15.00 4.45 -900.26 -4.00 -19.00 16 17 C 0.06 1.63 5.26 86.31 0.45 2.08 16 18 C 0.08 1.86 5.37 86.31 0.46 2.32 16 19 N -0.47 -10.69 4.73 -700.81 -3.32 -14.01 16 20 C 0.34 7.89 6.41 133.18 0.85 8.75 16 21 C -0.25 -4.57 9.30 22.58 0.21 -4.36 16 22 C 0.16 2.75 11.29 84.54 0.95 3.70 16 23 N -0.56 -11.85 10.33 -188.12 -1.94 -13.79 16 24 C 0.32 7.06 7.64 138.76 1.06 8.12 16 25 C -0.08 -1.20 10.32 71.23 0.73 -0.46 16 26 N -0.57 -13.88 8.77 -185.43 -1.63 -15.50 16 27 C 0.08 1.69 4.80 86.31 0.41 2.10 16 28 C 0.06 1.21 5.61 86.31 0.48 1.69 16 29 H 0.06 1.26 7.20 -2.39 -0.02 1.25 16 30 H 0.09 1.57 8.14 -2.38 -0.02 1.55 16 31 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 32 H 0.10 2.16 6.45 -2.39 -0.02 2.14 16 33 H 0.07 2.21 8.07 -2.38 -0.02 2.19 16 34 H 0.00 -0.28 7.41 -2.39 -0.02 -0.30 16 35 H 0.02 1.10 8.07 -2.39 -0.02 1.08 16 36 H 0.27 15.26 8.31 -92.71 -0.77 14.49 16 37 H 0.12 2.70 7.29 -2.39 -0.02 2.68 16 38 H 0.09 1.85 7.14 -2.39 -0.02 1.83 16 39 H 0.05 1.28 8.14 -2.38 -0.02 1.26 16 40 H 0.08 2.66 5.85 -2.39 -0.01 2.65 16 41 H 0.03 1.00 8.14 -2.39 -0.02 0.98 16 42 H 0.11 2.13 6.86 -2.38 -0.02 2.11 16 43 H 0.17 2.23 7.26 -2.91 -0.02 2.21 16 44 H 0.20 1.77 8.06 -2.91 -0.02 1.75 16 45 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 46 H 0.09 1.19 8.14 -2.38 -0.02 1.17 16 47 H 0.10 1.15 8.14 -2.39 -0.02 1.14 16 48 H 0.04 1.09 8.06 -2.39 -0.02 1.07 16 49 H 0.10 2.00 7.85 -2.39 -0.02 1.98 16 50 H 0.10 1.73 8.07 -2.39 -0.02 1.71 16 51 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 Total: -1.00 -79.64 407.25 -0.72 -80.36 By element: Atomic # 1 Polarization: 15.03 SS G_CDS: 0.92 Total: 15.95 kcal Atomic # 6 Polarization: 22.34 SS G_CDS: 9.01 Total: 31.35 kcal Atomic # 7 Polarization: -132.96 SS G_CDS: -12.63 Total: -145.59 kcal Atomic # 8 Polarization: -29.41 SS G_CDS: -0.04 Total: -29.45 kcal Atomic # 14 Polarization: 45.36 SS G_CDS: 2.03 Total: 47.38 kcal Total: -79.64 -0.72 -80.36 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183796070.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.041 kcal (2) G-P(sol) polarization free energy of solvation -79.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.364 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds