Wall clock time and date at job start Wed Apr 1 2020 05:40:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 N 1.40068 * 126.04212 * 2 1 4 4 C 1.30837 * 108.38700 * 180.22366 * 3 2 1 5 5 C 1.39772 * 108.32562 * 359.78365 * 4 3 2 6 6 C 1.35247 * 126.04419 * 179.83507 * 2 1 3 7 7 N 1.39215 * 126.21690 * 0.04548 * 6 2 1 8 8 C 1.46853 * 110.99884 * 117.31166 * 7 6 2 9 9 C 1.53032 * 109.51374 * 185.83370 * 8 7 6 10 10 C 1.53118 * 109.27877 * 300.82209 * 9 8 7 11 11 C 1.53122 * 109.16108 * 57.65656 * 10 9 8 12 12 H 1.08996 * 109.50542 * 62.32704 * 11 10 9 13 13 N 1.46505 * 109.50583 * 182.40732 * 11 10 9 14 14 C 1.34775 * 119.99715 * 275.00062 * 13 11 10 15 15 O 1.21586 * 120.00299 * 359.97438 * 14 13 11 16 16 N 1.34774 * 119.99717 * 179.97438 * 14 13 11 17 17 C 1.46500 * 119.99679 * 179.97438 * 16 14 13 18 18 C 1.53004 * 109.46770 * 177.04908 * 17 16 14 19 19 C 1.50695 * 115.55280 * 65.13575 * 18 17 16 20 20 H 1.08001 * 120.00153 * 265.40222 * 19 18 17 21 21 C 1.37881 * 119.99952 * 85.40297 * 19 18 17 22 22 N 1.31515 * 119.99855 * 353.21126 * 21 19 18 23 23 Si 1.86804 * 120.00047 * 173.21702 * 21 19 18 24 24 H 1.48496 * 109.46985 * 89.99492 * 23 21 19 25 25 H 1.48502 * 109.46925 * 209.99693 * 23 21 19 26 26 H 1.48496 * 109.46772 * 329.99608 * 23 21 19 27 27 C 1.53009 * 117.49768 * 279.46418 * 18 17 16 28 28 C 1.53005 * 117.49458 * 210.80751 * 18 17 16 29 29 C 1.46829 * 110.98413 * 241.52136 * 7 6 2 30 30 H 1.09003 * 109.47664 * 273.44901 * 1 2 3 31 31 H 1.09002 * 109.47585 * 33.45126 * 1 2 3 32 32 H 1.09005 * 109.47167 * 153.45286 * 1 2 3 33 33 H 1.08002 * 125.83679 * 179.79161 * 4 3 2 34 34 H 1.08003 * 126.09559 * 180.02562 * 5 4 3 35 35 H 1.08997 * 109.46375 * 65.81830 * 8 7 6 36 36 H 1.08999 * 109.45960 * 305.83841 * 8 7 6 37 37 H 1.09001 * 109.50407 * 60.76023 * 9 8 7 38 38 H 1.08995 * 109.50520 * 180.84390 * 9 8 7 39 39 H 1.09003 * 109.52596 * 177.55993 * 10 9 8 40 40 H 1.09000 * 109.52447 * 297.69102 * 10 9 8 41 41 H 0.96997 * 119.99613 * 94.99584 * 13 11 10 42 42 H 0.96996 * 120.00190 * 0.02562 * 16 14 13 43 43 H 1.09002 * 109.47855 * 297.04666 * 17 16 14 44 44 H 1.08998 * 109.47473 * 57.04982 * 17 16 14 45 45 H 0.97003 * 119.99511 * 185.06846 * 22 21 19 46 46 H 1.08997 * 117.49720 * 359.97438 * 27 18 17 47 47 H 1.08999 * 117.49599 * 145.02425 * 27 18 17 48 48 H 1.09007 * 117.49798 * 214.97807 * 28 18 17 49 49 H 1.08992 * 117.50397 * 359.97438 * 28 18 17 50 50 H 1.08994 * 109.46747 * 54.14042 * 29 7 6 51 51 H 1.09002 * 109.45541 * 294.16576 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 7 2.2891 1.1326 0.0000 4 6 3.5358 0.7358 -0.0048 5 6 3.5522 -0.6619 -0.0031 6 6 2.2607 -1.0935 0.0031 7 7 1.8366 -2.4195 0.0061 8 6 2.2762 -3.1153 -1.2101 9 6 1.6720 -4.5210 -1.2415 10 6 2.1225 -5.2928 0.0018 11 6 1.6947 -4.5223 1.2540 12 1 0.6075 -4.4515 1.2840 13 7 2.1722 -5.2250 2.4476 14 6 1.4442 -6.2293 2.9747 15 8 0.3910 -6.5519 2.4599 16 7 1.8836 -6.8760 4.0724 17 6 1.0920 -7.9673 4.6456 18 6 1.8442 -8.5746 5.8315 19 6 2.0385 -7.6615 7.0145 20 1 2.9517 -7.0934 7.1140 21 6 1.0505 -7.5512 7.9699 22 7 -0.1125 -8.1364 7.7837 23 14 1.3637 -6.5705 9.5286 24 1 0.9666 -5.1561 9.3117 25 1 0.5661 -7.1434 10.6425 26 1 2.8075 -6.6325 9.8706 27 6 2.9576 -9.5778 5.5231 28 6 1.6320 -10.0630 6.1153 29 6 2.2982 -3.1166 1.2131 30 1 -0.3634 0.0618 1.0258 31 1 -0.3634 0.8574 -0.5665 32 1 -0.3634 -0.9193 -0.4593 33 1 4.4039 1.3783 -0.0093 34 1 4.4323 -1.2879 -0.0057 35 1 3.3638 -3.1873 -1.2144 36 1 1.9456 -2.5583 -2.0868 37 1 0.5844 -4.4495 -1.2512 38 1 2.0104 -5.0426 -2.1368 39 1 1.6597 -6.2797 0.0055 40 1 3.2073 -5.3992 -0.0087 41 1 3.0122 -4.9674 2.8584 42 1 2.7237 -6.6185 4.4833 43 1 0.1311 -7.5802 4.9846 44 1 0.9280 -8.7340 3.8883 45 1 -0.8320 -7.9987 8.4196 46 1 3.1538 -9.8055 4.4754 47 1 3.8303 -9.5776 6.1761 48 1 1.6333 -10.3819 7.1577 49 1 0.9563 -10.6095 5.4575 50 1 1.9839 -2.5605 2.0963 51 1 3.3858 -3.1885 1.1972 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000366629655.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:40:40 Heat of formation + Delta-G solvation = 62.522249 kcal Electronic energy + Delta-G solvation = -30654.226286 eV Core-core repulsion = 26590.383425 eV Total energy + Delta-G solvation = -4063.842861 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.42407 -41.13392 -39.66716 -38.46820 -35.88936 -34.93372 -34.15316 -33.95961 -33.64100 -30.81859 -29.64949 -27.93966 -27.64401 -26.91417 -25.42925 -23.87861 -22.94645 -22.33114 -21.84609 -21.30517 -21.15036 -20.54549 -19.16905 -18.58720 -18.00061 -17.04746 -16.69164 -16.66746 -16.46249 -16.28296 -15.75892 -15.64717 -15.45546 -15.21959 -15.16650 -14.84082 -14.62540 -14.47969 -14.34304 -14.17067 -13.68109 -13.60210 -13.49432 -13.41683 -13.23380 -12.91088 -12.83964 -12.43617 -12.33972 -12.03013 -12.00120 -11.88736 -11.83479 -11.53536 -11.48991 -11.22097 -10.82761 -10.45030 -10.28608 -10.23632 -10.02473 -9.78648 -9.57831 -9.52261 -8.08642 -6.21446 0.76169 1.37395 1.42212 1.45283 1.53254 1.78227 1.85887 2.28294 2.43063 2.74821 3.19769 3.36965 3.60196 3.67363 3.72469 3.80610 3.99758 4.11246 4.25566 4.26442 4.27863 4.39472 4.46251 4.51822 4.58969 4.60740 4.64854 4.67951 4.68431 4.69356 4.76862 4.82714 4.85543 5.00201 5.01250 5.03155 5.09810 5.23706 5.29532 5.35031 5.47306 5.60256 5.61736 5.63975 5.71169 5.73484 5.79530 5.81030 6.17492 6.29682 6.38702 6.76165 6.85726 7.27150 7.47901 7.72604 8.98867 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.013109 B = 0.002335 C = 0.002120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2135.389425 B =11988.172052 C =13204.640412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.099 3.901 2 N -0.368 5.368 3 N -0.325 5.325 4 C 0.050 3.950 5 C -0.300 4.300 6 C 0.254 3.746 7 N -0.494 5.494 8 C 0.072 3.928 9 C -0.106 4.106 10 C -0.127 4.127 11 C 0.173 3.827 12 H 0.065 0.935 13 N -0.730 5.730 14 C 0.700 3.300 15 O -0.642 6.642 16 N -0.715 5.715 17 C 0.200 3.800 18 C 0.007 3.993 19 C -0.503 4.503 20 H 0.065 0.935 21 C 0.024 3.976 22 N -0.908 5.908 23 Si 0.949 3.051 24 H -0.281 1.281 25 H -0.291 1.291 26 H -0.263 1.263 27 C -0.174 4.174 28 C -0.161 4.161 29 C 0.077 3.923 30 H 0.073 0.927 31 H 0.095 0.905 32 H 0.100 0.900 33 H 0.210 0.790 34 H 0.163 0.837 35 H 0.061 0.939 36 H 0.083 0.917 37 H 0.064 0.936 38 H 0.096 0.904 39 H 0.049 0.951 40 H 0.080 0.920 41 H 0.409 0.591 42 H 0.406 0.594 43 H 0.024 0.976 44 H 0.033 0.967 45 H 0.258 0.742 46 H 0.089 0.911 47 H 0.086 0.914 48 H 0.063 0.937 49 H 0.070 0.930 50 H 0.071 0.929 51 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.437 13.555 -19.285 25.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 N -0.151 5.151 3 N -0.149 5.149 4 C -0.134 4.134 5 C -0.331 4.331 6 C 0.032 3.968 7 N -0.219 5.219 8 C -0.054 4.054 9 C -0.145 4.145 10 C -0.166 4.166 11 C 0.067 3.933 12 H 0.083 0.917 13 N -0.386 5.386 14 C 0.399 3.601 15 O -0.525 6.525 16 N -0.368 5.368 17 C 0.075 3.925 18 C 0.006 3.994 19 C -0.541 4.541 20 H 0.083 0.917 21 C -0.176 4.176 22 N -0.546 5.546 23 Si 0.775 3.225 24 H -0.207 1.207 25 H -0.217 1.217 26 H -0.187 1.187 27 C -0.211 4.211 28 C -0.199 4.199 29 C -0.051 4.051 30 H 0.092 0.908 31 H 0.113 0.887 32 H 0.119 0.881 33 H 0.227 0.773 34 H 0.181 0.819 35 H 0.080 0.920 36 H 0.101 0.899 37 H 0.082 0.918 38 H 0.115 0.885 39 H 0.067 0.933 40 H 0.098 0.902 41 H 0.245 0.755 42 H 0.242 0.758 43 H 0.042 0.958 44 H 0.051 0.949 45 H 0.067 0.933 46 H 0.107 0.893 47 H 0.105 0.895 48 H 0.082 0.918 49 H 0.088 0.912 50 H 0.090 0.910 51 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 6.851 14.166 -19.604 25.138 hybrid contribution 1.318 -0.197 1.658 2.127 sum 8.169 13.968 -17.945 24.164 Atomic orbital electron populations 1.21982 0.73140 1.05241 1.03839 1.48896 1.07577 1.02876 1.55755 1.77406 1.02949 1.07771 1.26730 1.24200 0.95443 0.95521 0.98264 1.21858 0.96713 0.96033 1.18528 1.19152 0.89462 0.86361 1.01776 1.58210 1.61949 0.97465 1.04235 1.22223 0.99191 0.94215 0.89811 1.21533 1.01334 0.93766 0.97852 1.21966 1.01871 0.98795 0.93938 1.20621 0.98968 0.89923 0.83775 0.91713 1.44850 1.26005 1.36143 1.31598 1.16115 0.83180 0.80196 0.80586 1.90848 1.25763 1.70471 1.65371 1.44907 1.26442 1.37140 1.28342 1.20374 0.93025 0.86741 0.92328 1.19048 0.97465 0.89058 0.93835 1.20663 1.02816 1.25782 1.04857 0.91727 1.25701 0.95110 0.96232 1.00579 1.70107 1.03168 1.43813 1.37473 0.85704 0.78494 0.78499 0.79817 1.20719 1.21678 1.18686 1.22998 0.92295 1.05930 0.99911 1.22445 0.99159 0.99100 0.99232 1.22123 0.99185 0.92473 0.91333 0.90794 0.88684 0.88107 0.77303 0.81914 0.92047 0.89857 0.91762 0.88543 0.93263 0.90177 0.75455 0.75824 0.95761 0.94907 0.93279 0.89304 0.89535 0.91817 0.91155 0.91024 0.91020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.52 11.42 127.77 1.46 2.98 16 2 N -0.37 -7.54 4.02 -366.65 -1.47 -9.01 16 3 N -0.33 -7.18 12.56 -57.09 -0.72 -7.89 16 4 C 0.05 0.85 12.01 85.21 1.02 1.88 16 5 C -0.30 -4.92 10.07 22.16 0.22 -4.69 16 6 C 0.25 4.75 5.59 131.42 0.73 5.49 16 7 N -0.49 -8.40 4.53 -702.14 -3.18 -11.58 16 8 C 0.07 0.95 5.24 86.32 0.45 1.40 16 9 C -0.11 -1.54 6.09 30.64 0.19 -1.36 16 10 C -0.13 -2.44 5.58 30.67 0.17 -2.27 16 11 C 0.17 3.91 2.62 45.04 0.12 4.03 16 12 H 0.06 1.92 7.58 -2.39 -0.02 1.90 16 13 N -0.73 -18.61 5.09 -457.56 -2.33 -20.94 16 14 C 0.70 25.66 8.53 179.06 1.53 27.19 16 15 O -0.64 -29.27 16.01 -3.99 -0.06 -29.33 16 16 N -0.72 -26.93 5.48 -478.53 -2.62 -29.56 16 17 C 0.20 9.17 5.50 86.38 0.48 9.64 16 18 C 0.01 0.31 1.38 -52.92 -0.07 0.24 16 19 C -0.50 -25.32 8.61 25.60 0.22 -25.10 16 20 H 0.06 3.11 7.82 -2.91 -0.02 3.09 16 21 C 0.02 1.29 5.38 84.66 0.46 1.74 16 22 N -0.91 -51.36 12.92 21.45 0.28 -51.08 16 23 Si 0.95 41.96 29.55 68.60 2.03 43.99 16 24 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 25 H -0.29 -12.99 7.11 99.48 0.71 -12.29 16 26 H -0.26 -11.05 7.11 99.48 0.71 -10.34 16 27 C -0.17 -6.76 9.96 30.62 0.30 -6.46 16 28 C -0.16 -7.26 9.43 30.62 0.29 -6.98 16 29 C 0.08 1.35 4.70 86.33 0.41 1.75 16 30 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 32 H 0.10 1.39 8.02 -2.38 -0.02 1.37 16 33 H 0.21 2.06 8.06 -2.91 -0.02 2.04 16 34 H 0.16 1.97 8.06 -2.91 -0.02 1.95 16 35 H 0.06 0.68 8.02 -2.39 -0.02 0.66 16 36 H 0.08 1.05 8.11 -2.39 -0.02 1.03 16 37 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 38 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 39 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 40 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 41 H 0.41 7.86 8.62 -92.71 -0.80 7.06 16 42 H 0.41 13.42 8.36 -92.71 -0.78 12.64 16 43 H 0.02 1.31 8.14 -2.39 -0.02 1.30 16 44 H 0.03 1.49 8.09 -2.39 -0.02 1.47 16 45 H 0.26 14.14 8.32 -92.71 -0.77 13.37 16 46 H 0.09 3.05 8.14 -2.39 -0.02 3.03 16 47 H 0.09 3.22 8.14 -2.39 -0.02 3.21 16 48 H 0.06 3.10 8.14 -2.38 -0.02 3.08 16 49 H 0.07 3.05 8.14 -2.39 -0.02 3.03 16 50 H 0.07 1.46 8.10 -2.39 -0.02 1.44 16 51 H 0.07 0.99 8.01 -2.39 -0.02 0.97 16 Total: -1.00 -69.93 418.33 -0.75 -70.68 By element: Atomic # 1 Polarization: 35.88 SS G_CDS: -0.64 Total: 35.23 kcal Atomic # 6 Polarization: 1.52 SS G_CDS: 7.97 Total: 9.50 kcal Atomic # 7 Polarization: -120.02 SS G_CDS: -10.05 Total: -130.06 kcal Atomic # 8 Polarization: -29.27 SS G_CDS: -0.06 Total: -29.33 kcal Atomic # 14 Polarization: 41.96 SS G_CDS: 2.03 Total: 43.99 kcal Total: -69.93 -0.75 -70.68 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000366629655.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.200 kcal (2) G-P(sol) polarization free energy of solvation -69.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.678 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds