Wall clock time and date at job start Wed Apr 1 2020 05:47:29
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46901 * 1
3 3 C 1.46955 * 111.00251 * 2 1
4 4 C 1.53051 * 109.36653 * 183.18663 * 3 2 1
5 5 N 1.46959 * 109.36531 * 301.60114 * 4 3 2
6 6 C 1.39935 * 111.00046 * 183.18604 * 5 4 3
7 7 C 1.39403 * 120.41935 * 180.02562 * 6 5 4
8 8 C 1.38310 * 118.43457 * 179.70571 * 7 6 5
9 9 C 1.39014 * 119.17700 * 0.52064 * 8 7 6
10 10 N 1.39627 * 119.61496 * 179.74913 * 9 8 7
11 11 C 1.34778 * 120.00050 * 185.09312 * 10 9 8
12 12 O 1.21279 * 120.00232 * 354.90754 * 11 10 9
13 13 C 1.50704 * 120.00129 * 174.90803 * 11 10 9
14 14 H 1.09002 * 109.47111 * 39.99809 * 13 11 10
15 15 N 1.46894 * 109.47293 * 160.00308 * 13 11 10
16 16 C 1.53002 * 109.46658 * 280.00114 * 13 11 10
17 17 C 1.53008 * 109.46621 * 174.99741 * 16 13 11
18 18 C 1.50705 * 109.46726 * 179.97438 * 17 16 13
19 19 H 1.07996 * 119.99798 * 0.02562 * 18 17 16
20 20 C 1.37875 * 119.99737 * 180.02562 * 18 17 16
21 21 N 1.31510 * 119.99920 * 180.02562 * 20 18 17
22 22 Si 1.86800 * 119.99879 * 359.97438 * 20 18 17
23 23 H 1.48499 * 109.47187 * 90.00689 * 22 20 18
24 24 H 1.48504 * 109.46923 * 209.99941 * 22 20 18
25 25 H 1.48494 * 109.47485 * 330.00193 * 22 20 18
26 26 N 1.32293 * 120.76924 * 359.47033 * 9 8 7
27 27 C 1.31931 * 121.71087 * 0.27735 * 26 9 8
28 28 C 1.46955 * 110.88084 * 59.31720 * 5 4 3
29 29 C 1.46959 * 110.99906 * 123.80123 * 2 1 3
30 30 H 1.08995 * 109.46617 * 59.99930 * 1 2 3
31 31 H 1.09003 * 109.47087 * 179.97438 * 1 2 3
32 32 H 1.08994 * 109.47220 * 300.00055 * 1 2 3
33 33 H 1.09005 * 109.48554 * 63.21826 * 3 2 1
34 34 H 1.08998 * 109.50578 * 303.16814 * 3 2 1
35 35 H 1.08996 * 109.48931 * 181.63465 * 4 3 2
36 36 H 1.09003 * 109.50382 * 61.57808 * 4 3 2
37 37 H 1.08004 * 120.78132 * 0.02562 * 7 6 5
38 38 H 1.07996 * 120.41279 * 180.26063 * 8 7 6
39 39 H 0.97003 * 119.99762 * 5.09549 * 10 9 8
40 40 H 1.00904 * 110.99633 * 296.04582 * 15 13 11
41 41 H 1.00902 * 110.99827 * 59.99568 * 15 13 11
42 42 H 1.08997 * 109.47660 * 294.99640 * 16 13 11
43 43 H 1.09000 * 109.47156 * 55.00531 * 16 13 11
44 44 H 1.09002 * 109.47134 * 299.99845 * 17 16 13
45 45 H 1.09000 * 109.46711 * 60.00517 * 17 16 13
46 46 H 0.97003 * 119.99768 * 179.97438 * 21 20 18
47 47 H 1.08002 * 119.62617 * 180.02562 * 27 26 9
48 48 H 1.09004 * 109.49027 * 60.64808 * 28 5 4
49 49 H 1.08998 * 109.49220 * 180.71217 * 28 5 4
50 50 H 1.08999 * 109.48712 * 296.77604 * 29 2 1
51 51 H 1.09004 * 109.48869 * 56.82080 * 29 2 1
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4690 0.0000 0.0000
3 6 1.9957 1.3719 0.0000
4 6 3.5235 1.3290 -0.0803
5 7 4.0501 0.5658 1.0598
6 6 5.4495 0.5657 1.0598
7 6 6.1553 -0.1035 2.0585
8 6 7.5375 -0.0821 2.0152
9 6 8.1729 0.6104 0.9908
10 7 9.5679 0.6424 0.9413
11 6 10.1922 1.3946 0.0135
12 8 9.5456 1.9702 -0.8359
13 6 11.6939 1.5205 0.0314
14 1 12.1367 0.5540 0.2722
15 7 12.1643 1.9592 -1.2893
16 6 12.1069 2.5480 1.0871
17 6 13.6328 2.5853 1.1928
18 6 14.0397 3.5979 2.2322
19 1 13.2854 4.1583 2.7645
20 6 15.3749 3.8087 2.5037
21 7 15.7300 4.6919 3.4111
22 14 16.6795 2.8388 1.5835
23 1 17.0689 3.5753 0.3542
24 1 17.8705 2.6626 2.4530
25 1 16.1366 1.5075 1.2120
26 7 7.4711 1.2347 0.0592
27 6 6.1519 1.2313 0.0659
28 6 3.5234 -0.8061 1.0598
29 6 1.9956 -0.7633 1.1401
30 1 -0.3632 0.5138 -0.8900
31 1 -0.3633 -1.0277 -0.0005
32 1 -0.3633 0.5138 0.8899
33 1 1.6938 1.8773 0.9174
34 1 1.6014 1.9132 -0.8600
35 1 3.9179 2.3447 -0.0511
36 1 3.8257 0.8481 -1.0106
37 1 5.6350 -0.6307 2.8445
38 1 8.1161 -0.5934 2.7703
39 1 10.0877 0.1232 1.5747
40 1 11.9603 1.2667 -1.9942
41 1 11.7675 2.8537 -1.5356
42 1 11.7384 3.5327 0.7996
43 1 11.6827 2.2686 2.0515
44 1 14.0013 1.6006 1.4804
45 1 14.0570 2.8647 0.2284
46 1 16.6694 4.8399 3.6023
47 1 5.6127 1.7519 -0.7117
48 1 3.8253 -1.3116 0.1424
49 1 3.9177 -1.3471 1.9200
50 1 1.6938 -0.2821 2.0704
51 1 1.6009 -1.7789 1.1112
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000563061030.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:47:29
Heat of formation + Delta-G solvation = 4.194138 kcal
Electronic energy + Delta-G solvation = -29866.623101 eV
Core-core repulsion = 25800.250944 eV
Total energy + Delta-G solvation = -4066.372157 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.206 amu
Computer time = 1.05 seconds
Orbital eigenvalues (eV)
-42.09212 -41.03460 -39.70713 -37.19367 -36.68538 -35.41628 -34.77459 -33.44569
-32.28780 -32.04817 -30.93788 -28.84284 -27.93291 -26.03034 -25.55500 -24.74679
-23.75969 -23.08130 -22.04872 -21.18950 -20.92768 -19.28268 -18.88134 -18.35117
-18.22980 -17.14387 -16.83923 -16.46972 -16.27353 -16.18045 -16.10795 -16.02903
-15.63758 -15.50694 -15.28489 -15.11703 -14.96839 -14.71195 -14.45709 -14.21575
-13.97301 -13.74003 -13.52494 -13.36179 -13.11983 -12.82062 -12.76165 -12.53217
-12.34700 -12.10248 -11.97313 -11.89882 -11.88609 -11.79053 -11.60826 -11.30662
-11.20552 -11.02877 -10.70622 -10.47697 -10.09346 -9.61677 -9.37999 -8.65583
-8.23972 -6.27478 0.02451 0.31048 1.42836 1.44235 1.53638 1.56903
1.90119 2.42505 2.55211 2.89237 2.92170 3.12826 3.33091 3.56047
3.71001 3.80514 3.81503 3.91143 3.97815 4.04918 4.07427 4.16873
4.25042 4.28524 4.32665 4.43123 4.58039 4.60248 4.66891 4.68697
4.70336 4.73849 4.81154 4.82922 4.88378 4.94008 4.98690 5.02492
5.14127 5.19054 5.50928 5.58220 5.66240 5.73885 5.78842 5.94843
6.00067 6.02689 6.10641 6.22683 6.33361 6.47766 6.81216 6.92123
7.30130 7.37086 8.92959
Molecular weight = 347.21amu
Principal moments of inertia in cm(-1)
A = 0.028535 B = 0.001712 C = 0.001687
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 981.023119 B =16354.071680 C =16589.404837
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.026 3.974
2 N -0.560 5.560
3 C 0.061 3.939
4 C 0.049 3.951
5 N -0.484 5.484
6 C 0.032 3.968
7 C -0.067 4.067
8 C -0.167 4.167
9 C 0.308 3.692
10 N -0.650 5.650
11 C 0.477 3.523
12 O -0.522 6.522
13 C 0.090 3.910
14 H 0.128 0.872
15 N -0.816 5.816
16 C -0.079 4.079
17 C 0.003 3.997
18 C -0.533 4.533
19 H 0.026 0.974
20 C 0.002 3.998
21 N -0.955 5.955
22 Si 0.955 3.045
23 H -0.274 1.274
24 H -0.287 1.287
25 H -0.238 1.238
26 N -0.496 5.496
27 C 0.064 3.936
28 C 0.059 3.941
29 C 0.057 3.943
30 H 0.074 0.926
31 H 0.078 0.922
32 H 0.028 0.972
33 H 0.041 0.959
34 H 0.095 0.905
35 H 0.087 0.913
36 H 0.050 0.950
37 H 0.170 0.830
38 H 0.173 0.827
39 H 0.434 0.566
40 H 0.349 0.651
41 H 0.345 0.655
42 H 0.036 0.964
43 H 0.067 0.933
44 H 0.028 0.972
45 H 0.027 0.973
46 H 0.264 0.736
47 H 0.159 0.841
48 H 0.043 0.957
49 H 0.102 0.898
50 H 0.043 0.957
51 H 0.099 0.901
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -31.165 -18.257 -5.141 36.483
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.122 4.122
2 N -0.285 5.285
3 C -0.068 4.068
4 C -0.079 4.079
5 N -0.200 5.200
6 C -0.069 4.069
7 C -0.095 4.095
8 C -0.190 4.190
9 C 0.076 3.924
10 N -0.299 5.299
11 C 0.262 3.738
12 O -0.395 6.395
13 C -0.026 4.026
14 H 0.146 0.854
15 N -0.345 5.345
16 C -0.118 4.118
17 C -0.034 4.034
18 C -0.571 4.571
19 H 0.045 0.955
20 C -0.194 4.194
21 N -0.596 5.596
22 Si 0.778 3.222
23 H -0.199 1.199
24 H -0.213 1.213
25 H -0.161 1.161
26 N -0.211 5.211
27 C -0.096 4.096
28 C -0.067 4.067
29 C -0.071 4.071
30 H 0.093 0.907
31 H 0.096 0.904
32 H 0.047 0.953
33 H 0.059 0.941
34 H 0.113 0.887
35 H 0.105 0.895
36 H 0.068 0.932
37 H 0.187 0.813
38 H 0.190 0.810
39 H 0.274 0.726
40 H 0.163 0.837
41 H 0.159 0.841
42 H 0.055 0.945
43 H 0.086 0.914
44 H 0.047 0.953
45 H 0.046 0.954
46 H 0.073 0.927
47 H 0.176 0.824
48 H 0.061 0.939
49 H 0.121 0.879
50 H 0.061 0.939
51 H 0.117 0.883
Dipole moment (debyes) X Y Z Total
from point charges -30.294 -17.315 -6.050 35.414
hybrid contribution -0.475 -0.038 0.635 0.794
sum -30.769 -17.353 -5.415 35.738
Atomic orbital electron populations
1.22380 0.85692 1.02935 1.01167 1.62196 1.09256 1.13864 1.43210
1.22158 0.93021 0.89741 1.01847 1.22383 0.95458 0.98800 0.91223
1.59433 1.03218 1.15260 1.42123 1.19976 0.89909 1.00753 0.96253
1.21340 0.92741 0.98045 0.97338 1.21746 0.95480 1.02508 0.99297
1.18874 0.85150 0.95513 0.92867 1.43742 1.03597 1.47373 1.35162
1.22837 0.92764 0.77692 0.80513 1.90746 1.67863 1.44498 1.36389
1.21713 0.86232 1.02029 0.92673 0.85409 1.59049 1.64096 1.08537
1.02834 1.21269 0.97764 0.96495 0.96238 1.19374 0.92785 0.95733
0.95549 1.21577 0.92396 1.21939 1.21207 0.95535 1.26022 1.01408
0.96114 0.95824 1.70088 1.17614 1.36711 1.35233 0.85589 0.77667
0.80769 0.78133 1.19909 1.21323 1.16149 1.67440 1.08637 1.19312
1.25676 1.22978 0.88679 1.00391 0.97531 1.22413 0.95128 0.86760
1.02378 1.22226 0.93331 0.99646 0.91865 0.90739 0.90351 0.95321
0.94092 0.88705 0.89511 0.93152 0.81267 0.80974 0.72610 0.83713
0.84096 0.94514 0.91428 0.95330 0.95424 0.92679 0.82407 0.93893
0.87936 0.93887 0.88266
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.21 9.60 127.69 1.23 1.43 16
2 N -0.56 -6.55 4.97 -921.94 -4.58 -11.13 16
3 C 0.06 0.73 5.62 86.31 0.49 1.22 16
4 C 0.05 0.72 4.30 86.31 0.37 1.09 16
5 N -0.48 -7.59 4.77 -694.21 -3.31 -10.90 16
6 C 0.03 0.61 5.65 38.24 0.22 0.83 16
7 C -0.07 -1.06 9.31 22.57 0.21 -0.85 16
8 C -0.17 -2.94 9.93 22.47 0.22 -2.71 16
9 C 0.31 7.94 7.42 132.85 0.99 8.93 16
10 N -0.65 -15.81 5.40 -308.32 -1.66 -17.47 16
11 C 0.48 14.56 7.03 87.66 0.62 15.17 16
12 O -0.52 -19.79 14.52 -3.03 -0.04 -19.83 16
13 C 0.09 2.64 3.15 44.17 0.14 2.78 16
14 H 0.13 3.06 8.14 -2.39 -0.02 3.05 16
15 N -0.82 -24.43 8.44 -171.80 -1.45 -25.88 16
16 C -0.08 -3.01 4.78 30.60 0.15 -2.86 16
17 C 0.00 0.14 3.93 29.85 0.12 0.26 16
18 C -0.53 -30.92 9.66 25.60 0.25 -30.67 16
19 H 0.03 1.70 7.99 -2.91 -0.02 1.68 16
20 C 0.00 0.15 5.47 84.65 0.46 0.61 16
21 N -0.96 -60.74 13.96 21.45 0.30 -60.44 16
22 Si 0.95 44.70 27.47 68.60 1.88 46.58 16
23 H -0.27 -12.60 7.11 99.48 0.71 -11.90 16
24 H -0.29 -13.18 7.11 99.48 0.71 -12.47 16
25 H -0.24 -10.09 6.54 99.48 0.65 -9.44 16
26 N -0.50 -15.32 7.88 -192.41 -1.52 -16.84 16
27 C 0.06 1.60 10.00 84.79 0.85 2.45 16
28 C 0.06 0.69 5.39 86.31 0.46 1.16 16
29 C 0.06 0.57 5.62 86.31 0.49 1.06 16
30 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16
31 H 0.08 0.49 8.13 -2.39 -0.02 0.47 16
32 H 0.03 0.23 8.14 -2.39 -0.02 0.21 16
33 H 0.04 0.53 8.14 -2.38 -0.02 0.51 16
34 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16
35 H 0.09 1.31 7.19 -2.39 -0.02 1.29 16
36 H 0.05 0.81 7.60 -2.39 -0.02 0.80 16
37 H 0.17 1.59 7.26 -2.91 -0.02 1.57 16
38 H 0.17 1.79 8.06 -2.91 -0.02 1.76 16
39 H 0.43 7.18 8.70 -92.71 -0.81 6.37 16
40 H 0.35 8.85 9.06 -89.69 -0.81 8.04 16
41 H 0.35 11.10 8.58 -89.69 -0.77 10.33 16
42 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16
43 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16
44 H 0.03 1.23 7.20 -2.39 -0.02 1.21 16
45 H 0.03 1.28 7.18 -2.39 -0.02 1.26 16
46 H 0.26 15.69 8.31 -92.71 -0.77 14.92 16
47 H 0.16 3.57 5.82 -2.91 -0.02 3.55 16
48 H 0.04 0.61 8.14 -2.38 -0.02 0.59 16
49 H 0.10 0.85 6.88 -2.39 -0.02 0.84 16
50 H 0.04 0.46 8.14 -2.39 -0.02 0.44 16
51 H 0.10 0.69 8.13 -2.39 -0.02 0.67 16
Total: -1.00 -80.30 404.39 -4.61 -84.91
By element:
Atomic # 1 Polarization: 32.59 SS G_CDS: -1.48 Total: 31.11 kcal
Atomic # 6 Polarization: -7.36 SS G_CDS: 7.25 Total: -0.11 kcal
Atomic # 7 Polarization: -130.44 SS G_CDS: -12.22 Total: -142.66 kcal
Atomic # 8 Polarization: -19.79 SS G_CDS: -0.04 Total: -19.83 kcal
Atomic # 14 Polarization: 44.70 SS G_CDS: 1.88 Total: 46.58 kcal
Total: -80.30 -4.61 -84.91 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000563061030.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 89.104 kcal
(2) G-P(sol) polarization free energy of solvation -80.297 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.807 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.613 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.910 kcal
(6) G-S(sol) free energy of system = (1) + (5) 4.194 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.05 seconds