Wall clock time and date at job start Wed Apr 1 2020 05:47:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46955 * 111.00251 * 2 1 4 4 C 1.53051 * 109.36653 * 183.18663 * 3 2 1 5 5 N 1.46959 * 109.36531 * 301.60114 * 4 3 2 6 6 C 1.39935 * 111.00046 * 183.18604 * 5 4 3 7 7 C 1.39403 * 120.41935 * 180.02562 * 6 5 4 8 8 C 1.38310 * 118.43457 * 179.70571 * 7 6 5 9 9 C 1.39014 * 119.17700 * 0.52064 * 8 7 6 10 10 N 1.39627 * 119.61496 * 179.74913 * 9 8 7 11 11 C 1.34778 * 120.00050 * 185.09312 * 10 9 8 12 12 O 1.21279 * 120.00232 * 354.90754 * 11 10 9 13 13 C 1.50704 * 120.00129 * 174.90803 * 11 10 9 14 14 H 1.09002 * 109.47111 * 39.99809 * 13 11 10 15 15 N 1.46894 * 109.47293 * 160.00308 * 13 11 10 16 16 C 1.53002 * 109.46658 * 280.00114 * 13 11 10 17 17 C 1.53008 * 109.46621 * 174.99741 * 16 13 11 18 18 C 1.50705 * 109.46726 * 179.97438 * 17 16 13 19 19 H 1.07996 * 119.99798 * 0.02562 * 18 17 16 20 20 C 1.37875 * 119.99737 * 180.02562 * 18 17 16 21 21 N 1.31510 * 119.99920 * 180.02562 * 20 18 17 22 22 Si 1.86800 * 119.99879 * 359.97438 * 20 18 17 23 23 H 1.48499 * 109.47187 * 90.00689 * 22 20 18 24 24 H 1.48504 * 109.46923 * 209.99941 * 22 20 18 25 25 H 1.48494 * 109.47485 * 330.00193 * 22 20 18 26 26 N 1.32293 * 120.76924 * 359.47033 * 9 8 7 27 27 C 1.31931 * 121.71087 * 0.27735 * 26 9 8 28 28 C 1.46955 * 110.88084 * 59.31720 * 5 4 3 29 29 C 1.46959 * 110.99906 * 123.80123 * 2 1 3 30 30 H 1.08995 * 109.46617 * 59.99930 * 1 2 3 31 31 H 1.09003 * 109.47087 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.47220 * 300.00055 * 1 2 3 33 33 H 1.09005 * 109.48554 * 63.21826 * 3 2 1 34 34 H 1.08998 * 109.50578 * 303.16814 * 3 2 1 35 35 H 1.08996 * 109.48931 * 181.63465 * 4 3 2 36 36 H 1.09003 * 109.50382 * 61.57808 * 4 3 2 37 37 H 1.08004 * 120.78132 * 0.02562 * 7 6 5 38 38 H 1.07996 * 120.41279 * 180.26063 * 8 7 6 39 39 H 0.97003 * 119.99762 * 5.09549 * 10 9 8 40 40 H 1.00904 * 110.99633 * 296.04582 * 15 13 11 41 41 H 1.00902 * 110.99827 * 59.99568 * 15 13 11 42 42 H 1.08997 * 109.47660 * 294.99640 * 16 13 11 43 43 H 1.09000 * 109.47156 * 55.00531 * 16 13 11 44 44 H 1.09002 * 109.47134 * 299.99845 * 17 16 13 45 45 H 1.09000 * 109.46711 * 60.00517 * 17 16 13 46 46 H 0.97003 * 119.99768 * 179.97438 * 21 20 18 47 47 H 1.08002 * 119.62617 * 180.02562 * 27 26 9 48 48 H 1.09004 * 109.49027 * 60.64808 * 28 5 4 49 49 H 1.08998 * 109.49220 * 180.71217 * 28 5 4 50 50 H 1.08999 * 109.48712 * 296.77604 * 29 2 1 51 51 H 1.09004 * 109.48869 * 56.82080 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9957 1.3719 0.0000 4 6 3.5235 1.3290 -0.0803 5 7 4.0501 0.5658 1.0598 6 6 5.4495 0.5657 1.0598 7 6 6.1553 -0.1035 2.0585 8 6 7.5375 -0.0821 2.0152 9 6 8.1729 0.6104 0.9908 10 7 9.5679 0.6424 0.9413 11 6 10.1922 1.3946 0.0135 12 8 9.5456 1.9702 -0.8359 13 6 11.6939 1.5205 0.0314 14 1 12.1367 0.5540 0.2722 15 7 12.1643 1.9592 -1.2893 16 6 12.1069 2.5480 1.0871 17 6 13.6328 2.5853 1.1928 18 6 14.0397 3.5979 2.2322 19 1 13.2854 4.1583 2.7645 20 6 15.3749 3.8087 2.5037 21 7 15.7300 4.6919 3.4111 22 14 16.6795 2.8388 1.5835 23 1 17.0689 3.5753 0.3542 24 1 17.8705 2.6626 2.4530 25 1 16.1366 1.5075 1.2120 26 7 7.4711 1.2347 0.0592 27 6 6.1519 1.2313 0.0659 28 6 3.5234 -0.8061 1.0598 29 6 1.9956 -0.7633 1.1401 30 1 -0.3632 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8899 33 1 1.6938 1.8773 0.9174 34 1 1.6014 1.9132 -0.8600 35 1 3.9179 2.3447 -0.0511 36 1 3.8257 0.8481 -1.0106 37 1 5.6350 -0.6307 2.8445 38 1 8.1161 -0.5934 2.7703 39 1 10.0877 0.1232 1.5747 40 1 11.9603 1.2667 -1.9942 41 1 11.7675 2.8537 -1.5356 42 1 11.7384 3.5327 0.7996 43 1 11.6827 2.2686 2.0515 44 1 14.0013 1.6006 1.4804 45 1 14.0570 2.8647 0.2284 46 1 16.6694 4.8399 3.6023 47 1 5.6127 1.7519 -0.7117 48 1 3.8253 -1.3116 0.1424 49 1 3.9177 -1.3471 1.9200 50 1 1.6938 -0.2821 2.0704 51 1 1.6009 -1.7789 1.1112 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000563061030.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:47:29 Heat of formation + Delta-G solvation = 4.194138 kcal Electronic energy + Delta-G solvation = -29866.623101 eV Core-core repulsion = 25800.250944 eV Total energy + Delta-G solvation = -4066.372157 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.09212 -41.03460 -39.70713 -37.19367 -36.68538 -35.41628 -34.77459 -33.44569 -32.28780 -32.04817 -30.93788 -28.84284 -27.93291 -26.03034 -25.55500 -24.74679 -23.75969 -23.08130 -22.04872 -21.18950 -20.92768 -19.28268 -18.88134 -18.35117 -18.22980 -17.14387 -16.83923 -16.46972 -16.27353 -16.18045 -16.10795 -16.02903 -15.63758 -15.50694 -15.28489 -15.11703 -14.96839 -14.71195 -14.45709 -14.21575 -13.97301 -13.74003 -13.52494 -13.36179 -13.11983 -12.82062 -12.76165 -12.53217 -12.34700 -12.10248 -11.97313 -11.89882 -11.88609 -11.79053 -11.60826 -11.30662 -11.20552 -11.02877 -10.70622 -10.47697 -10.09346 -9.61677 -9.37999 -8.65583 -8.23972 -6.27478 0.02451 0.31048 1.42836 1.44235 1.53638 1.56903 1.90119 2.42505 2.55211 2.89237 2.92170 3.12826 3.33091 3.56047 3.71001 3.80514 3.81503 3.91143 3.97815 4.04918 4.07427 4.16873 4.25042 4.28524 4.32665 4.43123 4.58039 4.60248 4.66891 4.68697 4.70336 4.73849 4.81154 4.82922 4.88378 4.94008 4.98690 5.02492 5.14127 5.19054 5.50928 5.58220 5.66240 5.73885 5.78842 5.94843 6.00067 6.02689 6.10641 6.22683 6.33361 6.47766 6.81216 6.92123 7.30130 7.37086 8.92959 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.028535 B = 0.001712 C = 0.001687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 981.023119 B =16354.071680 C =16589.404837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.560 5.560 3 C 0.061 3.939 4 C 0.049 3.951 5 N -0.484 5.484 6 C 0.032 3.968 7 C -0.067 4.067 8 C -0.167 4.167 9 C 0.308 3.692 10 N -0.650 5.650 11 C 0.477 3.523 12 O -0.522 6.522 13 C 0.090 3.910 14 H 0.128 0.872 15 N -0.816 5.816 16 C -0.079 4.079 17 C 0.003 3.997 18 C -0.533 4.533 19 H 0.026 0.974 20 C 0.002 3.998 21 N -0.955 5.955 22 Si 0.955 3.045 23 H -0.274 1.274 24 H -0.287 1.287 25 H -0.238 1.238 26 N -0.496 5.496 27 C 0.064 3.936 28 C 0.059 3.941 29 C 0.057 3.943 30 H 0.074 0.926 31 H 0.078 0.922 32 H 0.028 0.972 33 H 0.041 0.959 34 H 0.095 0.905 35 H 0.087 0.913 36 H 0.050 0.950 37 H 0.170 0.830 38 H 0.173 0.827 39 H 0.434 0.566 40 H 0.349 0.651 41 H 0.345 0.655 42 H 0.036 0.964 43 H 0.067 0.933 44 H 0.028 0.972 45 H 0.027 0.973 46 H 0.264 0.736 47 H 0.159 0.841 48 H 0.043 0.957 49 H 0.102 0.898 50 H 0.043 0.957 51 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.165 -18.257 -5.141 36.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.285 5.285 3 C -0.068 4.068 4 C -0.079 4.079 5 N -0.200 5.200 6 C -0.069 4.069 7 C -0.095 4.095 8 C -0.190 4.190 9 C 0.076 3.924 10 N -0.299 5.299 11 C 0.262 3.738 12 O -0.395 6.395 13 C -0.026 4.026 14 H 0.146 0.854 15 N -0.345 5.345 16 C -0.118 4.118 17 C -0.034 4.034 18 C -0.571 4.571 19 H 0.045 0.955 20 C -0.194 4.194 21 N -0.596 5.596 22 Si 0.778 3.222 23 H -0.199 1.199 24 H -0.213 1.213 25 H -0.161 1.161 26 N -0.211 5.211 27 C -0.096 4.096 28 C -0.067 4.067 29 C -0.071 4.071 30 H 0.093 0.907 31 H 0.096 0.904 32 H 0.047 0.953 33 H 0.059 0.941 34 H 0.113 0.887 35 H 0.105 0.895 36 H 0.068 0.932 37 H 0.187 0.813 38 H 0.190 0.810 39 H 0.274 0.726 40 H 0.163 0.837 41 H 0.159 0.841 42 H 0.055 0.945 43 H 0.086 0.914 44 H 0.047 0.953 45 H 0.046 0.954 46 H 0.073 0.927 47 H 0.176 0.824 48 H 0.061 0.939 49 H 0.121 0.879 50 H 0.061 0.939 51 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -30.294 -17.315 -6.050 35.414 hybrid contribution -0.475 -0.038 0.635 0.794 sum -30.769 -17.353 -5.415 35.738 Atomic orbital electron populations 1.22380 0.85692 1.02935 1.01167 1.62196 1.09256 1.13864 1.43210 1.22158 0.93021 0.89741 1.01847 1.22383 0.95458 0.98800 0.91223 1.59433 1.03218 1.15260 1.42123 1.19976 0.89909 1.00753 0.96253 1.21340 0.92741 0.98045 0.97338 1.21746 0.95480 1.02508 0.99297 1.18874 0.85150 0.95513 0.92867 1.43742 1.03597 1.47373 1.35162 1.22837 0.92764 0.77692 0.80513 1.90746 1.67863 1.44498 1.36389 1.21713 0.86232 1.02029 0.92673 0.85409 1.59049 1.64096 1.08537 1.02834 1.21269 0.97764 0.96495 0.96238 1.19374 0.92785 0.95733 0.95549 1.21577 0.92396 1.21939 1.21207 0.95535 1.26022 1.01408 0.96114 0.95824 1.70088 1.17614 1.36711 1.35233 0.85589 0.77667 0.80769 0.78133 1.19909 1.21323 1.16149 1.67440 1.08637 1.19312 1.25676 1.22978 0.88679 1.00391 0.97531 1.22413 0.95128 0.86760 1.02378 1.22226 0.93331 0.99646 0.91865 0.90739 0.90351 0.95321 0.94092 0.88705 0.89511 0.93152 0.81267 0.80974 0.72610 0.83713 0.84096 0.94514 0.91428 0.95330 0.95424 0.92679 0.82407 0.93893 0.87936 0.93887 0.88266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 9.60 127.69 1.23 1.43 16 2 N -0.56 -6.55 4.97 -921.94 -4.58 -11.13 16 3 C 0.06 0.73 5.62 86.31 0.49 1.22 16 4 C 0.05 0.72 4.30 86.31 0.37 1.09 16 5 N -0.48 -7.59 4.77 -694.21 -3.31 -10.90 16 6 C 0.03 0.61 5.65 38.24 0.22 0.83 16 7 C -0.07 -1.06 9.31 22.57 0.21 -0.85 16 8 C -0.17 -2.94 9.93 22.47 0.22 -2.71 16 9 C 0.31 7.94 7.42 132.85 0.99 8.93 16 10 N -0.65 -15.81 5.40 -308.32 -1.66 -17.47 16 11 C 0.48 14.56 7.03 87.66 0.62 15.17 16 12 O -0.52 -19.79 14.52 -3.03 -0.04 -19.83 16 13 C 0.09 2.64 3.15 44.17 0.14 2.78 16 14 H 0.13 3.06 8.14 -2.39 -0.02 3.05 16 15 N -0.82 -24.43 8.44 -171.80 -1.45 -25.88 16 16 C -0.08 -3.01 4.78 30.60 0.15 -2.86 16 17 C 0.00 0.14 3.93 29.85 0.12 0.26 16 18 C -0.53 -30.92 9.66 25.60 0.25 -30.67 16 19 H 0.03 1.70 7.99 -2.91 -0.02 1.68 16 20 C 0.00 0.15 5.47 84.65 0.46 0.61 16 21 N -0.96 -60.74 13.96 21.45 0.30 -60.44 16 22 Si 0.95 44.70 27.47 68.60 1.88 46.58 16 23 H -0.27 -12.60 7.11 99.48 0.71 -11.90 16 24 H -0.29 -13.18 7.11 99.48 0.71 -12.47 16 25 H -0.24 -10.09 6.54 99.48 0.65 -9.44 16 26 N -0.50 -15.32 7.88 -192.41 -1.52 -16.84 16 27 C 0.06 1.60 10.00 84.79 0.85 2.45 16 28 C 0.06 0.69 5.39 86.31 0.46 1.16 16 29 C 0.06 0.57 5.62 86.31 0.49 1.06 16 30 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 31 H 0.08 0.49 8.13 -2.39 -0.02 0.47 16 32 H 0.03 0.23 8.14 -2.39 -0.02 0.21 16 33 H 0.04 0.53 8.14 -2.38 -0.02 0.51 16 34 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 35 H 0.09 1.31 7.19 -2.39 -0.02 1.29 16 36 H 0.05 0.81 7.60 -2.39 -0.02 0.80 16 37 H 0.17 1.59 7.26 -2.91 -0.02 1.57 16 38 H 0.17 1.79 8.06 -2.91 -0.02 1.76 16 39 H 0.43 7.18 8.70 -92.71 -0.81 6.37 16 40 H 0.35 8.85 9.06 -89.69 -0.81 8.04 16 41 H 0.35 11.10 8.58 -89.69 -0.77 10.33 16 42 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 43 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 44 H 0.03 1.23 7.20 -2.39 -0.02 1.21 16 45 H 0.03 1.28 7.18 -2.39 -0.02 1.26 16 46 H 0.26 15.69 8.31 -92.71 -0.77 14.92 16 47 H 0.16 3.57 5.82 -2.91 -0.02 3.55 16 48 H 0.04 0.61 8.14 -2.38 -0.02 0.59 16 49 H 0.10 0.85 6.88 -2.39 -0.02 0.84 16 50 H 0.04 0.46 8.14 -2.39 -0.02 0.44 16 51 H 0.10 0.69 8.13 -2.39 -0.02 0.67 16 Total: -1.00 -80.30 404.39 -4.61 -84.91 By element: Atomic # 1 Polarization: 32.59 SS G_CDS: -1.48 Total: 31.11 kcal Atomic # 6 Polarization: -7.36 SS G_CDS: 7.25 Total: -0.11 kcal Atomic # 7 Polarization: -130.44 SS G_CDS: -12.22 Total: -142.66 kcal Atomic # 8 Polarization: -19.79 SS G_CDS: -0.04 Total: -19.83 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 1.88 Total: 46.58 kcal Total: -80.30 -4.61 -84.91 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000563061030.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.104 kcal (2) G-P(sol) polarization free energy of solvation -80.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.910 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds