Wall clock time and date at job start Wed Apr 1 2020 05:47:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46959 * 110.99809 * 2 1 4 4 C 1.53049 * 109.36312 * 176.80968 * 3 2 1 5 5 N 1.46961 * 109.36204 * 58.40888 * 4 3 2 6 6 C 1.39388 * 111.00358 * 176.81186 * 5 4 3 7 7 C 1.39272 * 120.88518 * 63.79021 * 6 5 4 8 8 C 1.38014 * 119.14251 * 179.97438 * 7 6 5 9 9 N 1.31961 * 120.97086 * 0.02689 * 8 7 6 10 10 C 1.31983 * 121.95691 * 359.97438 * 9 8 7 11 11 C 1.38489 * 120.74482 * 359.73541 * 10 9 8 12 12 N 1.40191 * 120.52461 * 180.29161 * 11 10 9 13 13 C 1.34779 * 119.99642 * 325.54378 * 12 11 10 14 14 O 1.21292 * 120.00033 * 4.36603 * 13 12 11 15 15 C 1.50701 * 119.99965 * 184.36675 * 13 12 11 16 16 H 1.09008 * 109.47326 * 40.00064 * 15 13 12 17 17 N 1.46893 * 109.47339 * 160.00064 * 15 13 12 18 18 C 1.53006 * 109.47222 * 280.00481 * 15 13 12 19 19 C 1.52999 * 109.47176 * 174.99835 * 18 15 13 20 20 C 1.50696 * 109.46852 * 179.97438 * 19 18 15 21 21 H 1.08003 * 120.00542 * 359.97438 * 20 19 18 22 22 C 1.37881 * 119.99859 * 180.02562 * 20 19 18 23 23 N 1.31516 * 120.00168 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 120.00019 * 179.97438 * 22 20 19 25 25 H 1.48496 * 109.47232 * 60.00025 * 24 22 20 26 26 H 1.48497 * 109.47272 * 180.02562 * 24 22 20 27 27 H 1.48504 * 109.47241 * 299.99929 * 24 22 20 28 28 C 1.46960 * 110.87797 * 300.67709 * 5 4 3 29 29 C 1.46953 * 110.99760 * 236.20754 * 2 1 3 30 30 H 1.08998 * 109.47186 * 183.79673 * 1 2 3 31 31 H 1.09004 * 109.47082 * 63.79339 * 1 2 3 32 32 H 1.09004 * 109.46597 * 303.79469 * 1 2 3 33 33 H 1.09002 * 109.49461 * 296.78317 * 3 2 1 34 34 H 1.09001 * 109.48883 * 56.85160 * 3 2 1 35 35 H 1.08997 * 109.49598 * 298.44136 * 4 3 2 36 36 H 1.08997 * 109.50585 * 178.37931 * 4 3 2 37 37 H 1.08008 * 120.43453 * 359.96483 * 7 6 5 38 38 H 1.07992 * 119.51422 * 180.02562 * 8 7 6 39 39 H 1.08000 * 119.62547 * 180.02562 * 10 9 8 40 40 H 0.96998 * 120.00145 * 145.55260 * 12 11 10 41 41 H 1.00901 * 110.99881 * 60.00252 * 17 15 13 42 42 H 1.00904 * 110.99984 * 183.95110 * 17 15 13 43 43 H 1.08997 * 109.46410 * 295.00108 * 18 15 13 44 44 H 1.09002 * 109.47234 * 54.99467 * 18 15 13 45 45 H 1.08995 * 109.47196 * 299.99706 * 19 18 15 46 46 H 1.09001 * 109.46838 * 59.99533 * 19 18 15 47 47 H 0.96994 * 120.00411 * 179.97438 * 23 22 20 48 48 H 1.08998 * 109.48594 * 299.35236 * 28 5 4 49 49 H 1.08996 * 109.49114 * 179.29004 * 28 5 4 50 50 H 1.09005 * 109.48707 * 303.15132 * 29 2 1 51 51 H 1.08997 * 109.49247 * 63.21908 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9957 1.3720 0.0000 4 6 3.5234 1.3291 0.0804 5 7 4.0501 0.5660 -1.0599 6 6 5.4440 0.5660 -1.0599 7 6 6.1589 -0.0316 -0.0248 8 6 7.5384 -0.0112 -0.0615 9 7 8.1827 0.5646 -1.0589 10 6 7.5466 1.1428 -2.0603 11 6 6.1625 1.1614 -2.1034 12 7 5.4915 1.7716 -3.1724 13 6 6.0116 2.8697 -3.7557 14 8 7.0977 3.2838 -3.4091 15 6 5.2436 3.5831 -4.8385 16 1 4.1858 3.6093 -4.5767 17 7 5.7487 4.9558 -4.9738 18 6 5.4225 2.8407 -6.1644 19 6 4.5449 3.4912 -7.2356 20 6 4.7216 2.7604 -8.5415 21 1 5.3931 1.9166 -8.6017 22 6 4.0268 3.1695 -9.6600 23 7 3.2095 4.1973 -9.5870 24 14 4.2464 2.2641 -11.2791 25 1 3.8489 0.8434 -11.1096 26 1 3.3954 2.8961 -12.3191 27 1 5.6701 2.3334 -11.6959 28 6 3.5234 -0.8059 -1.0599 29 6 1.9956 -0.7631 -1.1402 30 1 -0.3633 -1.0254 0.0680 31 1 -0.3633 0.4538 -0.9221 32 1 -0.3633 0.5716 0.8541 33 1 1.6937 1.8775 -0.9173 34 1 1.6014 1.9128 0.8603 35 1 3.8254 0.8479 1.0106 36 1 3.9180 2.3448 0.0515 37 1 5.6406 -0.5049 0.7961 38 1 8.0988 -0.4731 0.7377 39 1 8.1118 1.6025 -2.8576 40 1 4.6530 1.4036 -3.4922 41 1 6.7281 4.9585 -5.2165 42 1 5.2076 5.4753 -5.6488 43 1 6.4674 2.8912 -6.4708 44 1 5.1306 1.7980 -6.0393 45 1 3.5001 3.4408 -6.9291 46 1 4.8369 4.5339 -7.3606 47 1 2.7210 4.4854 -10.3738 48 1 3.8254 -1.3114 -0.1427 49 1 3.9177 -1.3468 -1.9202 50 1 1.6013 -1.7789 -1.1111 51 1 1.6937 -0.2819 -2.0704 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000564572832.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:47:46 Heat of formation + Delta-G solvation = 15.783502 kcal Electronic energy + Delta-G solvation = -31066.815829 eV Core-core repulsion = 27000.946224 eV Total energy + Delta-G solvation = -4065.869605 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.25930 -39.79155 -38.93270 -36.15171 -35.71673 -34.81214 -32.90484 -31.38401 -31.36334 -30.25299 -29.94313 -28.08170 -26.57710 -24.62892 -24.37058 -24.01931 -23.14398 -22.28081 -20.85151 -20.16422 -19.87634 -18.04447 -17.57852 -17.35316 -16.46422 -16.21784 -15.70812 -15.63346 -15.37653 -15.17398 -14.81327 -14.73757 -14.60949 -14.37257 -14.29807 -14.00270 -13.87176 -13.68880 -13.21893 -13.00456 -12.93902 -12.71763 -12.37917 -12.27501 -12.20701 -11.80259 -11.68381 -11.38715 -11.33963 -11.15902 -10.96345 -10.78568 -10.74588 -10.04519 -10.01701 -9.69809 -9.56524 -9.38225 -9.28606 -9.01321 -8.72645 -8.47415 -8.36129 -8.23883 -6.11972 -4.15379 0.93609 0.97808 2.71751 3.00598 3.26257 3.27469 3.31333 3.33713 3.52559 3.67689 4.36342 4.40204 4.46924 4.60889 4.67582 4.74548 4.76996 4.81419 4.89740 4.92812 5.08939 5.10932 5.14089 5.17944 5.18499 5.24221 5.39504 5.42712 5.48186 5.49539 5.50368 5.51333 5.62580 5.65883 5.68001 5.89321 6.17710 6.21895 6.39437 6.43814 6.51158 6.62738 6.64493 6.80437 6.95825 7.30055 7.45784 7.51078 7.58024 7.82673 7.84953 7.87485 8.22300 8.27225 8.90288 9.49769 10.98845 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.009191 B = 0.002845 C = 0.002424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3045.855337 B = 9838.993908 C =11549.222425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.546 5.546 3 C 0.055 3.945 4 C 0.066 3.934 5 N -0.501 5.501 6 C 0.099 3.901 7 C -0.183 4.183 8 C 0.082 3.918 9 N -0.468 5.468 10 C 0.103 3.897 11 C 0.131 3.869 12 N -0.659 5.659 13 C 0.526 3.474 14 O -0.519 6.519 15 C 0.079 3.921 16 H 0.100 0.900 17 N -0.830 5.830 18 C -0.139 4.139 19 C 0.025 3.975 20 C -0.526 4.526 21 H 0.054 0.946 22 C 0.059 3.941 23 N -0.893 5.893 24 Si 0.893 3.107 25 H -0.277 1.277 26 H -0.286 1.286 27 H -0.276 1.276 28 C 0.060 3.940 29 C 0.055 3.945 30 H 0.069 0.931 31 H 0.029 0.971 32 H 0.068 0.932 33 H 0.048 0.952 34 H 0.083 0.917 35 H 0.049 0.951 36 H 0.083 0.917 37 H 0.133 0.867 38 H 0.154 0.846 39 H 0.174 0.826 40 H 0.418 0.582 41 H 0.347 0.653 42 H 0.357 0.643 43 H 0.057 0.943 44 H 0.056 0.944 45 H 0.019 0.981 46 H 0.018 0.982 47 H 0.262 0.738 48 H 0.050 0.950 49 H 0.083 0.917 50 H 0.083 0.917 51 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.825 -9.742 22.124 24.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.271 5.271 3 C -0.073 4.073 4 C -0.061 4.061 5 N -0.223 5.223 6 C -0.006 4.006 7 C -0.206 4.206 8 C -0.076 4.076 9 N -0.176 5.176 10 C -0.057 4.057 11 C 0.032 3.968 12 N -0.305 5.305 13 C 0.315 3.685 14 O -0.393 6.393 15 C -0.036 4.036 16 H 0.118 0.882 17 N -0.363 5.363 18 C -0.178 4.178 19 C -0.012 4.012 20 C -0.564 4.564 21 H 0.073 0.927 22 C -0.142 4.142 23 N -0.532 5.532 24 Si 0.721 3.279 25 H -0.202 1.202 26 H -0.212 1.212 27 H -0.202 1.202 28 C -0.066 4.066 29 C -0.073 4.073 30 H 0.087 0.913 31 H 0.048 0.952 32 H 0.087 0.913 33 H 0.066 0.934 34 H 0.101 0.899 35 H 0.068 0.932 36 H 0.101 0.899 37 H 0.151 0.849 38 H 0.171 0.829 39 H 0.191 0.809 40 H 0.256 0.744 41 H 0.160 0.840 42 H 0.172 0.828 43 H 0.076 0.924 44 H 0.075 0.925 45 H 0.037 0.963 46 H 0.037 0.963 47 H 0.072 0.928 48 H 0.068 0.932 49 H 0.102 0.898 50 H 0.101 0.899 51 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -1.521 -9.162 22.975 24.781 hybrid contribution -1.269 -0.970 -2.063 2.609 sum -2.790 -10.132 20.911 23.403 Atomic orbital electron populations 1.22353 0.86828 1.02339 1.00847 1.62191 1.08162 1.13919 1.42824 1.22194 0.93888 0.89483 1.01708 1.22213 0.94410 0.98548 0.90925 1.59541 1.03578 1.14939 1.44264 1.18822 0.89124 0.99870 0.92755 1.22465 0.96183 1.02319 0.99616 1.22582 0.91291 0.96893 0.96785 1.67809 1.40602 1.07755 1.01477 1.23133 0.90020 0.95422 0.97121 1.18822 0.92400 0.96668 0.88910 1.43474 1.26746 1.28303 1.31937 1.21215 0.86443 0.78813 0.82051 1.90638 1.20893 1.65198 1.62596 1.21447 0.98784 0.90247 0.93128 0.88213 1.58736 1.08841 1.11517 1.57158 1.22418 1.01944 0.99688 0.93790 1.19088 0.94240 0.95874 0.91959 1.21135 1.25735 1.15067 0.94445 0.92730 1.25006 0.95085 0.95067 0.99080 1.69932 1.27569 1.25696 1.29973 0.86642 0.78195 0.79934 0.83166 1.20207 1.21204 1.20187 1.22279 0.94540 0.87969 1.01852 1.22195 0.93880 0.98879 0.92367 0.91266 0.95208 0.91300 0.93370 0.89901 0.93227 0.89894 0.84913 0.82856 0.80894 0.74443 0.84007 0.82768 0.92433 0.92482 0.96304 0.96341 0.92789 0.93172 0.89827 0.89878 0.93334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 9.60 60.07 0.58 0.74 16 2 N -0.55 -4.34 4.97 -242.75 -1.21 -5.54 16 3 C 0.06 0.45 5.62 -3.77 -0.02 0.43 16 4 C 0.07 0.58 5.37 -3.77 -0.02 0.56 16 5 N -0.50 -4.78 4.29 -170.59 -0.73 -5.51 16 6 C 0.10 1.09 4.75 -83.38 -0.40 0.69 16 7 C -0.18 -1.78 8.75 -39.28 -0.34 -2.12 16 8 C 0.08 0.88 11.17 -17.58 -0.20 0.68 16 9 N -0.47 -6.42 10.35 -13.19 -0.14 -6.55 16 10 C 0.10 1.50 9.88 -17.39 -0.17 1.33 16 11 C 0.13 1.73 6.35 -83.28 -0.53 1.20 16 12 N -0.66 -8.74 5.21 -9.62 -0.05 -8.79 16 13 C 0.53 8.30 6.93 -10.98 -0.08 8.23 16 14 O -0.52 -9.47 13.69 5.55 0.08 -9.39 16 15 C 0.08 1.28 3.21 -68.86 -0.22 1.06 16 16 H 0.10 1.53 8.14 -51.92 -0.42 1.11 16 17 N -0.83 -13.65 8.94 -5.65 -0.05 -13.70 16 18 C -0.14 -2.59 4.78 -26.73 -0.13 -2.72 16 19 C 0.03 0.60 4.74 -27.89 -0.13 0.47 16 20 C -0.53 -14.13 9.11 -34.44 -0.31 -14.44 16 21 H 0.05 1.44 7.74 -52.48 -0.41 1.03 16 22 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 23 N -0.89 -25.63 13.29 55.43 0.74 -24.90 16 24 Si 0.89 21.01 29.54 -169.99 -5.02 15.99 16 25 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 26 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 27 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 28 C 0.06 0.50 5.32 -3.76 -0.02 0.48 16 29 C 0.06 0.43 5.62 -3.77 -0.02 0.41 16 30 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.03 0.21 8.14 -51.93 -0.42 -0.22 16 32 H 0.07 0.40 8.13 -51.93 -0.42 -0.02 16 33 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.08 0.57 8.13 -51.93 -0.42 0.15 16 35 H 0.05 0.42 7.52 -51.93 -0.39 0.03 16 36 H 0.08 0.80 8.13 -51.93 -0.42 0.38 16 37 H 0.13 1.01 7.22 -52.48 -0.38 0.63 16 38 H 0.15 1.18 8.06 -52.49 -0.42 0.76 16 39 H 0.17 2.76 6.19 -52.49 -0.33 2.43 16 40 H 0.42 4.95 8.59 -40.82 -0.35 4.60 16 41 H 0.35 5.75 8.58 -39.29 -0.34 5.41 16 42 H 0.36 5.90 7.55 -39.29 -0.30 5.60 16 43 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 44 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 45 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 46 H 0.02 0.45 6.87 -51.93 -0.36 0.09 16 47 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 48 H 0.05 0.40 7.32 -51.93 -0.38 0.02 16 49 H 0.08 0.68 8.13 -51.93 -0.42 0.26 16 50 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 51 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 LS Contribution 408.01 15.07 6.15 6.15 Total: -1.00 -30.85 408.01 -10.62 -41.47 By element: Atomic # 1 Polarization: 20.54 SS G_CDS: -8.27 Total: 12.26 kcal Atomic # 6 Polarization: 0.63 SS G_CDS: -2.11 Total: -1.49 kcal Atomic # 7 Polarization: -63.56 SS G_CDS: -1.44 Total: -65.00 kcal Atomic # 8 Polarization: -9.47 SS G_CDS: 0.08 Total: -9.39 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -30.85 -10.62 -41.47 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000564572832.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.258 kcal (2) G-P(sol) polarization free energy of solvation -30.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.474 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds