Wall clock time and date at job start Wed Apr 1 2020 05:47:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46959 * 110.99809 * 2 1 4 4 C 1.53049 * 109.36312 * 176.80968 * 3 2 1 5 5 N 1.46961 * 109.36204 * 58.40888 * 4 3 2 6 6 C 1.39388 * 111.00358 * 176.81186 * 5 4 3 7 7 C 1.39272 * 120.88518 * 63.79021 * 6 5 4 8 8 C 1.38014 * 119.14251 * 179.97438 * 7 6 5 9 9 N 1.31961 * 120.97086 * 0.02689 * 8 7 6 10 10 C 1.31983 * 121.95691 * 359.97438 * 9 8 7 11 11 C 1.38489 * 120.74482 * 359.73541 * 10 9 8 12 12 N 1.40191 * 120.52461 * 180.29161 * 11 10 9 13 13 C 1.34779 * 119.99642 * 325.54378 * 12 11 10 14 14 O 1.21292 * 120.00033 * 4.36603 * 13 12 11 15 15 C 1.50701 * 119.99965 * 184.36675 * 13 12 11 16 16 H 1.09008 * 109.47326 * 40.00064 * 15 13 12 17 17 N 1.46893 * 109.47339 * 160.00064 * 15 13 12 18 18 C 1.53006 * 109.47222 * 280.00481 * 15 13 12 19 19 C 1.52999 * 109.47176 * 174.99835 * 18 15 13 20 20 C 1.50696 * 109.46852 * 179.97438 * 19 18 15 21 21 H 1.08003 * 120.00542 * 359.97438 * 20 19 18 22 22 C 1.37881 * 119.99859 * 180.02562 * 20 19 18 23 23 N 1.31516 * 120.00168 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 120.00019 * 179.97438 * 22 20 19 25 25 H 1.48496 * 109.47232 * 60.00025 * 24 22 20 26 26 H 1.48497 * 109.47272 * 180.02562 * 24 22 20 27 27 H 1.48504 * 109.47241 * 299.99929 * 24 22 20 28 28 C 1.46960 * 110.87797 * 300.67709 * 5 4 3 29 29 C 1.46953 * 110.99760 * 236.20754 * 2 1 3 30 30 H 1.08998 * 109.47186 * 183.79673 * 1 2 3 31 31 H 1.09004 * 109.47082 * 63.79339 * 1 2 3 32 32 H 1.09004 * 109.46597 * 303.79469 * 1 2 3 33 33 H 1.09002 * 109.49461 * 296.78317 * 3 2 1 34 34 H 1.09001 * 109.48883 * 56.85160 * 3 2 1 35 35 H 1.08997 * 109.49598 * 298.44136 * 4 3 2 36 36 H 1.08997 * 109.50585 * 178.37931 * 4 3 2 37 37 H 1.08008 * 120.43453 * 359.96483 * 7 6 5 38 38 H 1.07992 * 119.51422 * 180.02562 * 8 7 6 39 39 H 1.08000 * 119.62547 * 180.02562 * 10 9 8 40 40 H 0.96998 * 120.00145 * 145.55260 * 12 11 10 41 41 H 1.00901 * 110.99881 * 60.00252 * 17 15 13 42 42 H 1.00904 * 110.99984 * 183.95110 * 17 15 13 43 43 H 1.08997 * 109.46410 * 295.00108 * 18 15 13 44 44 H 1.09002 * 109.47234 * 54.99467 * 18 15 13 45 45 H 1.08995 * 109.47196 * 299.99706 * 19 18 15 46 46 H 1.09001 * 109.46838 * 59.99533 * 19 18 15 47 47 H 0.96994 * 120.00411 * 179.97438 * 23 22 20 48 48 H 1.08998 * 109.48594 * 299.35236 * 28 5 4 49 49 H 1.08996 * 109.49114 * 179.29004 * 28 5 4 50 50 H 1.09005 * 109.48707 * 303.15132 * 29 2 1 51 51 H 1.08997 * 109.49247 * 63.21908 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9957 1.3720 0.0000 4 6 3.5234 1.3291 0.0804 5 7 4.0501 0.5660 -1.0599 6 6 5.4440 0.5660 -1.0599 7 6 6.1589 -0.0316 -0.0248 8 6 7.5384 -0.0112 -0.0615 9 7 8.1827 0.5646 -1.0589 10 6 7.5466 1.1428 -2.0603 11 6 6.1625 1.1614 -2.1034 12 7 5.4915 1.7716 -3.1724 13 6 6.0116 2.8697 -3.7557 14 8 7.0977 3.2838 -3.4091 15 6 5.2436 3.5831 -4.8385 16 1 4.1858 3.6093 -4.5767 17 7 5.7487 4.9558 -4.9738 18 6 5.4225 2.8407 -6.1644 19 6 4.5449 3.4912 -7.2356 20 6 4.7216 2.7604 -8.5415 21 1 5.3931 1.9166 -8.6017 22 6 4.0268 3.1695 -9.6600 23 7 3.2095 4.1973 -9.5870 24 14 4.2464 2.2641 -11.2791 25 1 3.8489 0.8434 -11.1096 26 1 3.3954 2.8961 -12.3191 27 1 5.6701 2.3334 -11.6959 28 6 3.5234 -0.8059 -1.0599 29 6 1.9956 -0.7631 -1.1402 30 1 -0.3633 -1.0254 0.0680 31 1 -0.3633 0.4538 -0.9221 32 1 -0.3633 0.5716 0.8541 33 1 1.6937 1.8775 -0.9173 34 1 1.6014 1.9128 0.8603 35 1 3.8254 0.8479 1.0106 36 1 3.9180 2.3448 0.0515 37 1 5.6406 -0.5049 0.7961 38 1 8.0988 -0.4731 0.7377 39 1 8.1118 1.6025 -2.8576 40 1 4.6530 1.4036 -3.4922 41 1 6.7281 4.9585 -5.2165 42 1 5.2076 5.4753 -5.6488 43 1 6.4674 2.8912 -6.4708 44 1 5.1306 1.7980 -6.0393 45 1 3.5001 3.4408 -6.9291 46 1 4.8369 4.5339 -7.3606 47 1 2.7210 4.4854 -10.3738 48 1 3.8254 -1.3114 -0.1427 49 1 3.9177 -1.3468 -1.9202 50 1 1.6013 -1.7789 -1.1111 51 1 1.6937 -0.2819 -2.0704 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000564572832.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:47:45 Heat of formation + Delta-G solvation = -7.971659 kcal Electronic energy + Delta-G solvation = -31067.845930 eV Core-core repulsion = 27000.946224 eV Total energy + Delta-G solvation = -4066.899706 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.22264 -40.83770 -39.79096 -37.22393 -36.89813 -35.93945 -34.85900 -32.18866 -32.01107 -31.70545 -31.24875 -28.83299 -28.09175 -25.98966 -25.32384 -24.66385 -24.21151 -23.20695 -22.40849 -21.21832 -20.82326 -19.15892 -18.74150 -18.31512 -18.20889 -17.39465 -16.54435 -16.42170 -16.36109 -16.08021 -15.95515 -15.90591 -15.79918 -15.75534 -15.23484 -15.03408 -14.76534 -14.66253 -14.56367 -14.52900 -14.01247 -13.59267 -13.54273 -13.46085 -13.01000 -12.95060 -12.84107 -12.69723 -12.55662 -12.32987 -12.02194 -11.98816 -11.88497 -11.81542 -11.71829 -11.32554 -10.86480 -10.60738 -10.55848 -10.42673 -9.75516 -9.67753 -9.35634 -9.34080 -8.21729 -6.31925 0.00862 0.05542 1.39796 1.41130 1.47753 1.49641 1.88451 2.39639 2.50326 2.74024 2.93910 3.12094 3.53804 3.59653 3.71306 3.74546 3.86341 3.95944 4.00514 4.08875 4.14609 4.15740 4.20345 4.24788 4.34644 4.46767 4.57920 4.61046 4.64161 4.65265 4.65823 4.76392 4.80983 4.85094 4.86592 5.00414 5.04343 5.07001 5.08270 5.22599 5.46159 5.59104 5.64933 5.72572 5.80183 5.97384 6.02142 6.03011 6.15803 6.20703 6.32912 6.45544 6.83355 6.90854 7.06553 7.37181 8.88770 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.009191 B = 0.002845 C = 0.002424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3045.855337 B = 9838.993908 C =11549.222425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.549 5.549 3 C 0.059 3.941 4 C 0.069 3.931 5 N -0.510 5.510 6 C 0.109 3.891 7 C -0.171 4.171 8 C 0.086 3.914 9 N -0.493 5.493 10 C 0.084 3.916 11 C 0.110 3.890 12 N -0.646 5.646 13 C 0.530 3.470 14 O -0.546 6.546 15 C 0.088 3.912 16 H 0.111 0.889 17 N -0.829 5.829 18 C -0.122 4.122 19 C 0.031 3.969 20 C -0.546 4.546 21 H 0.055 0.945 22 C 0.007 3.993 23 N -0.926 5.926 24 Si 0.957 3.043 25 H -0.267 1.267 26 H -0.283 1.283 27 H -0.272 1.272 28 C 0.063 3.937 29 C 0.057 3.943 30 H 0.078 0.922 31 H 0.022 0.978 32 H 0.076 0.924 33 H 0.034 0.966 34 H 0.095 0.905 35 H 0.059 0.941 36 H 0.072 0.928 37 H 0.163 0.837 38 H 0.187 0.813 39 H 0.150 0.850 40 H 0.425 0.575 41 H 0.346 0.654 42 H 0.355 0.645 43 H 0.048 0.952 44 H 0.066 0.934 45 H 0.002 0.998 46 H 0.004 0.996 47 H 0.264 0.736 48 H 0.059 0.941 49 H 0.083 0.917 50 H 0.097 0.903 51 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.484 -11.731 23.785 26.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.274 5.274 3 C -0.069 4.069 4 C -0.058 4.058 5 N -0.232 5.232 6 C 0.004 3.996 7 C -0.193 4.193 8 C -0.072 4.072 9 N -0.202 5.202 10 C -0.075 4.075 11 C 0.012 3.988 12 N -0.291 5.291 13 C 0.318 3.682 14 O -0.423 6.423 15 C -0.027 4.027 16 H 0.129 0.871 17 N -0.361 5.361 18 C -0.162 4.162 19 C -0.006 4.006 20 C -0.584 4.584 21 H 0.073 0.927 22 C -0.192 4.192 23 N -0.566 5.566 24 Si 0.782 3.218 25 H -0.192 1.192 26 H -0.208 1.208 27 H -0.197 1.197 28 C -0.063 4.063 29 C -0.071 4.071 30 H 0.097 0.903 31 H 0.041 0.959 32 H 0.095 0.905 33 H 0.052 0.948 34 H 0.114 0.886 35 H 0.077 0.923 36 H 0.090 0.910 37 H 0.181 0.819 38 H 0.204 0.796 39 H 0.167 0.833 40 H 0.264 0.736 41 H 0.159 0.841 42 H 0.171 0.829 43 H 0.067 0.933 44 H 0.084 0.916 45 H 0.021 0.979 46 H 0.022 0.978 47 H 0.073 0.927 48 H 0.077 0.923 49 H 0.101 0.899 50 H 0.116 0.884 51 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -2.195 -11.179 24.647 27.153 hybrid contribution -1.094 -0.401 -2.463 2.724 sum -3.288 -11.579 22.184 25.240 Atomic orbital electron populations 1.22394 0.86011 1.03070 1.00863 1.62240 1.08935 1.13591 1.42665 1.22167 0.93430 0.89772 1.01579 1.22196 0.94787 0.97917 0.90876 1.59524 1.02723 1.16008 1.44961 1.18908 0.89904 0.98616 0.92149 1.22746 0.95868 1.01081 0.99613 1.23173 0.92139 0.95551 0.96347 1.67779 1.41471 1.08739 1.02211 1.22826 0.90547 0.96690 0.97432 1.18880 0.92202 0.98010 0.89720 1.43240 1.26687 1.27399 1.31800 1.20991 0.85914 0.79283 0.82019 1.90636 1.21894 1.66145 1.63581 1.21332 0.99536 0.89773 0.92069 0.87123 1.58748 1.08781 1.11625 1.56949 1.22158 1.00181 1.00034 0.93784 1.18949 0.94082 0.95161 0.92385 1.21596 1.25526 1.15283 0.95998 0.92689 1.25840 0.94832 0.95866 1.02649 1.70046 1.28491 1.27099 1.30947 0.85624 0.78242 0.79009 0.78932 1.19231 1.20847 1.19678 1.22305 0.94730 0.87039 1.02268 1.22203 0.93620 0.99527 0.91796 0.90315 0.95892 0.90484 0.94813 0.88636 0.92309 0.90985 0.81918 0.79604 0.83295 0.73643 0.84118 0.82950 0.93325 0.91580 0.97924 0.97797 0.92728 0.92251 0.89866 0.88440 0.94643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 9.60 127.69 1.23 1.50 16 2 N -0.55 -7.52 4.97 -921.91 -4.58 -12.10 16 3 C 0.06 0.85 5.62 86.31 0.49 1.33 16 4 C 0.07 1.07 5.37 86.31 0.46 1.54 16 5 N -0.51 -8.81 4.29 -693.62 -2.97 -11.79 16 6 C 0.11 2.21 4.75 38.61 0.18 2.40 16 7 C -0.17 -2.82 8.75 22.47 0.20 -2.62 16 8 C 0.09 1.63 11.17 84.62 0.95 2.57 16 9 N -0.49 -13.24 10.35 -195.64 -2.03 -15.26 16 10 C 0.08 2.48 9.88 84.73 0.84 3.32 16 11 C 0.11 2.88 6.35 38.29 0.24 3.13 16 12 N -0.65 -17.10 5.21 -302.72 -1.58 -18.68 16 13 C 0.53 16.93 6.93 87.66 0.61 17.54 16 14 O -0.55 -20.48 13.69 -3.07 -0.04 -20.52 16 15 C 0.09 2.87 3.21 44.17 0.14 3.01 16 16 H 0.11 3.37 8.14 -2.38 -0.02 3.35 16 17 N -0.83 -27.77 8.94 -171.79 -1.54 -29.30 16 18 C -0.12 -4.60 4.78 30.60 0.15 -4.46 16 19 C 0.03 1.51 4.74 29.85 0.14 1.65 16 20 C -0.55 -29.59 9.11 25.60 0.23 -29.36 16 21 H 0.05 2.90 7.74 -2.91 -0.02 2.88 16 22 C 0.01 0.37 5.46 84.66 0.46 0.84 16 23 N -0.93 -53.78 13.29 21.45 0.28 -53.50 16 24 Si 0.96 43.01 29.54 68.60 2.03 45.03 16 25 H -0.27 -11.54 7.11 99.48 0.71 -10.84 16 26 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 27 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 28 C 0.06 0.88 5.32 86.31 0.46 1.34 16 29 C 0.06 0.77 5.62 86.31 0.49 1.25 16 30 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.02 0.29 8.14 -2.39 -0.02 0.27 16 32 H 0.08 0.73 8.13 -2.38 -0.02 0.71 16 33 H 0.03 0.59 8.14 -2.39 -0.02 0.57 16 34 H 0.10 1.13 8.13 -2.39 -0.02 1.11 16 35 H 0.06 0.82 7.52 -2.39 -0.02 0.80 16 36 H 0.07 1.29 8.13 -2.39 -0.02 1.27 16 37 H 0.16 1.74 7.22 -2.91 -0.02 1.72 16 38 H 0.19 2.19 8.06 -2.91 -0.02 2.17 16 39 H 0.15 5.04 6.19 -2.91 -0.02 5.03 16 40 H 0.42 9.89 8.59 -92.71 -0.80 9.09 16 41 H 0.35 11.76 8.58 -89.69 -0.77 10.99 16 42 H 0.36 12.04 7.55 -89.69 -0.68 11.36 16 43 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 44 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 45 H 0.00 0.12 8.14 -2.39 -0.02 0.10 16 46 H 0.00 0.19 6.87 -2.39 -0.02 0.17 16 47 H 0.26 14.54 8.31 -92.71 -0.77 13.77 16 48 H 0.06 0.74 7.32 -2.39 -0.02 0.73 16 49 H 0.08 1.19 8.13 -2.39 -0.02 1.17 16 50 H 0.10 1.04 8.14 -2.38 -0.02 1.02 16 51 H 0.04 0.58 8.14 -2.39 -0.02 0.56 16 Total: -1.00 -66.70 408.01 -4.45 -71.15 By element: Atomic # 1 Polarization: 41.26 SS G_CDS: -1.28 Total: 39.98 kcal Atomic # 6 Polarization: -2.27 SS G_CDS: 7.26 Total: 4.98 kcal Atomic # 7 Polarization: -128.21 SS G_CDS: -12.41 Total: -140.62 kcal Atomic # 8 Polarization: -20.48 SS G_CDS: -0.04 Total: -20.52 kcal Atomic # 14 Polarization: 43.01 SS G_CDS: 2.03 Total: 45.03 kcal Total: -66.70 -4.45 -71.15 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000564572832.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.177 kcal (2) G-P(sol) polarization free energy of solvation -66.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds