Wall clock time and date at job start Wed Apr 1 2020 06:03:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.37953 * 127.07830 * 2 1 4 4 C 1.46965 * 126.49767 * 0.04312 * 3 2 1 5 5 O 1.21666 * 119.99686 * 0.02562 * 4 3 2 6 6 N 1.34771 * 120.00126 * 180.02562 * 4 3 2 7 7 C 1.47023 * 125.64845 * 359.69195 * 6 4 3 8 8 C 1.54313 * 107.27635 * 180.97132 * 7 6 4 9 9 C 1.55155 * 102.86545 * 22.52693 * 8 7 6 10 10 C 1.47422 * 125.65078 * 180.02562 * 6 4 3 11 11 N 1.31602 * 107.00982 * 180.02562 * 3 2 1 12 12 N 1.28548 * 109.68757 * 359.76321 * 11 3 2 13 13 C 1.31991 * 110.00929 * 0.39709 * 12 11 3 14 14 N 1.37784 * 126.27446 * 179.88101 * 13 12 11 15 15 C 1.46856 * 110.99815 * 35.74952 * 14 13 12 16 16 C 1.53034 * 109.52021 * 174.16442 * 15 14 13 17 17 C 1.53117 * 109.28171 * 59.17627 * 16 15 14 18 18 C 1.52999 * 109.52190 * 182.44192 * 17 16 15 19 19 C 1.50704 * 109.47263 * 294.67996 * 18 17 16 20 20 H 1.08003 * 119.99730 * 0.02562 * 19 18 17 21 21 C 1.37874 * 120.00387 * 180.02562 * 19 18 17 22 22 N 1.31516 * 119.99945 * 0.02562 * 21 19 18 23 23 Si 1.86794 * 120.00104 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47420 * 0.02562 * 23 21 19 25 25 H 1.48504 * 109.46977 * 119.99978 * 23 21 19 26 26 H 1.48499 * 109.47496 * 240.00168 * 23 21 19 27 27 C 1.53119 * 109.16167 * 302.34586 * 17 16 15 28 28 C 1.46843 * 110.99856 * 271.54132 * 14 13 12 29 29 H 1.08996 * 109.47026 * 275.44140 * 1 2 3 30 30 H 1.08998 * 109.47268 * 35.44943 * 1 2 3 31 31 H 1.09003 * 109.46984 * 155.44282 * 1 2 3 32 32 H 1.09005 * 109.88054 * 300.51321 * 7 6 4 33 33 H 1.08999 * 109.88572 * 61.67678 * 7 6 4 34 34 H 1.09003 * 110.92561 * 264.11074 * 8 7 6 35 35 H 1.09005 * 110.59169 * 140.78742 * 8 7 6 36 36 H 1.09000 * 111.00336 * 206.23756 * 9 8 7 37 37 H 1.08999 * 111.00752 * 82.37603 * 9 8 7 38 38 H 1.09007 * 110.36319 * 274.66899 * 10 6 4 39 39 H 1.08998 * 110.36775 * 36.87840 * 10 6 4 40 40 H 1.08999 * 109.45966 * 294.17332 * 15 14 13 41 41 H 1.08993 * 109.46272 * 54.14436 * 15 14 13 42 42 H 1.08999 * 109.50048 * 179.12102 * 16 15 14 43 43 H 1.09000 * 109.50200 * 299.23325 * 16 15 14 44 44 H 1.08995 * 109.52073 * 62.24996 * 17 16 15 45 45 H 1.08997 * 109.47780 * 54.68555 * 18 17 16 46 46 H 1.09001 * 109.47212 * 174.68543 * 18 17 16 47 47 H 0.96994 * 119.99902 * 180.02562 * 22 21 19 48 48 H 1.09001 * 109.50075 * 297.71373 * 27 17 16 49 49 H 1.08998 * 109.50602 * 177.59451 * 27 17 16 50 50 H 1.08997 * 109.46176 * 305.85003 * 28 14 13 51 51 H 1.08996 * 109.46740 * 65.82067 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2967 1.1006 0.0000 4 6 1.8812 2.5103 0.0009 5 8 0.6985 2.7958 0.0022 6 7 2.8102 3.4867 0.0003 7 6 4.2663 3.2839 0.0051 8 6 4.9233 4.6801 0.0273 9 6 3.8032 5.5797 0.6131 10 6 2.5346 4.9349 0.0015 11 7 3.5328 0.6490 -0.0006 12 7 3.5243 -0.6364 0.0041 13 6 2.2811 -1.0798 -0.0007 14 7 1.8864 -2.3999 -0.0002 15 6 2.7982 -3.2215 0.8063 16 6 2.2509 -4.6473 0.9038 17 6 2.1151 -5.2341 -0.5039 18 6 1.5112 -6.6372 -0.4169 19 6 2.4704 -7.5535 0.2982 20 1 3.4161 -7.1730 0.6553 21 6 2.1409 -8.8775 0.4967 22 7 0.9897 -9.3410 0.0614 23 14 3.3296 -10.0131 1.3837 24 1 4.5452 -9.2528 1.7705 25 1 2.6782 -10.5574 2.6021 26 1 3.7103 -11.1316 0.4842 27 6 1.1993 -4.3337 -1.3376 28 6 1.7772 -2.9170 -1.3702 29 1 -0.3633 0.0974 1.0230 30 1 -0.3634 0.8371 -0.5960 31 1 -0.3633 -0.9347 -0.4271 32 1 4.5592 2.7203 0.8910 33 1 4.5691 2.7481 -0.8945 34 1 5.1889 5.0014 -0.9799 35 1 5.7986 4.6816 0.6770 36 1 3.9165 6.6114 0.2800 37 1 3.7847 5.5219 1.7014 38 1 2.3806 5.2926 -1.0166 39 1 1.6615 5.1544 0.6161 40 1 3.7813 -3.2413 0.3359 41 1 2.8826 -2.7956 1.8060 42 1 2.9357 -5.2606 1.4894 43 1 1.2737 -4.6297 1.3865 44 1 3.0978 -5.2879 -0.9724 45 1 0.5710 -6.5947 0.1330 46 1 1.3274 -7.0167 -1.4220 47 1 0.7577 -10.2723 0.2013 48 1 0.2056 -4.3112 -0.8901 49 1 1.1328 -4.7231 -2.3535 50 1 1.1199 -2.2700 -1.9512 51 1 2.7650 -2.9382 -1.8304 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000568865524.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:03:14 Heat of formation + Delta-G solvation = 49.484383 kcal Electronic energy + Delta-G solvation = -30868.467162 eV Core-core repulsion = 26804.058937 eV Total energy + Delta-G solvation = -4064.408225 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.21631 -40.24242 -38.94208 -37.78220 -35.27211 -34.59893 -32.57140 -32.21267 -30.65708 -30.20570 -29.21113 -28.09551 -27.35265 -25.14001 -24.29753 -23.18883 -22.54298 -21.94699 -21.48022 -20.66474 -19.98218 -19.01451 -17.89202 -17.16090 -17.01957 -16.60986 -16.33691 -16.13239 -15.79546 -14.87529 -14.56327 -14.51910 -14.05656 -13.95611 -13.82908 -13.63713 -13.49056 -13.30443 -13.12463 -13.07039 -12.75857 -12.65591 -12.15838 -12.13220 -11.88002 -11.73385 -11.52488 -11.29464 -11.19520 -10.99389 -10.94317 -10.81644 -10.69699 -10.57017 -10.41821 -10.35459 -10.14424 -9.65532 -9.58657 -9.15597 -9.09404 -8.94619 -8.60136 -8.35166 -6.00052 -4.01593 0.87356 1.71922 2.15896 2.65705 2.91862 3.30861 3.38980 3.42589 3.59491 3.78379 4.14001 4.21839 4.45900 4.46867 4.52105 4.74105 4.86444 4.87724 4.93436 5.01069 5.17012 5.19941 5.28599 5.31697 5.34697 5.35637 5.40917 5.42086 5.52830 5.54847 5.57646 5.60611 5.70829 5.71828 5.82421 5.88591 5.96261 6.06301 6.15418 6.30955 6.35299 6.56418 6.74166 6.92023 6.99511 7.00392 7.08881 7.16584 7.54538 7.66741 7.80929 7.99833 8.33708 8.42529 9.05104 9.62430 11.11211 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.027075 B = 0.001979 C = 0.001895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1033.917714 B =14144.532240 C =14775.862583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.434 5.434 3 C 0.109 3.891 4 C 0.629 3.371 5 O -0.536 6.536 6 N -0.598 5.598 7 C 0.104 3.896 8 C -0.134 4.134 9 C -0.134 4.134 10 C 0.108 3.892 11 N -0.229 5.229 12 N -0.312 5.312 13 C 0.386 3.614 14 N -0.465 5.465 15 C 0.071 3.929 16 C -0.100 4.100 17 C -0.084 4.084 18 C 0.028 3.972 19 C -0.515 4.515 20 H 0.057 0.943 21 C 0.056 3.944 22 N -0.896 5.896 23 Si 0.888 3.112 24 H -0.273 1.273 25 H -0.285 1.285 26 H -0.285 1.285 27 C -0.111 4.111 28 C 0.067 3.933 29 H 0.086 0.914 30 H 0.099 0.901 31 H 0.098 0.902 32 H 0.081 0.919 33 H 0.080 0.920 34 H 0.078 0.922 35 H 0.085 0.915 36 H 0.087 0.913 37 H 0.078 0.922 38 H 0.073 0.927 39 H 0.082 0.918 40 H 0.056 0.944 41 H 0.071 0.929 42 H 0.084 0.916 43 H 0.065 0.935 44 H 0.058 0.942 45 H 0.017 0.983 46 H 0.016 0.984 47 H 0.259 0.741 48 H 0.069 0.931 49 H 0.070 0.930 50 H 0.066 0.934 51 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.818 29.539 -1.022 29.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.125 5.125 3 C -0.157 4.157 4 C 0.414 3.586 5 O -0.412 6.412 6 N -0.331 5.331 7 C -0.018 4.018 8 C -0.172 4.172 9 C -0.172 4.172 10 C -0.014 4.014 11 N -0.078 5.078 12 N -0.162 5.162 13 C 0.030 3.970 14 N -0.191 5.191 15 C -0.055 4.055 16 C -0.138 4.138 17 C -0.103 4.103 18 C -0.009 4.009 19 C -0.553 4.553 20 H 0.075 0.925 21 C -0.145 4.145 22 N -0.535 5.535 23 Si 0.717 3.283 24 H -0.197 1.197 25 H -0.211 1.211 26 H -0.211 1.211 27 C -0.149 4.149 28 C -0.060 4.060 29 H 0.104 0.896 30 H 0.118 0.882 31 H 0.117 0.883 32 H 0.100 0.900 33 H 0.099 0.901 34 H 0.096 0.904 35 H 0.104 0.896 36 H 0.106 0.894 37 H 0.097 0.903 38 H 0.092 0.908 39 H 0.101 0.899 40 H 0.074 0.926 41 H 0.090 0.910 42 H 0.102 0.898 43 H 0.084 0.916 44 H 0.076 0.924 45 H 0.036 0.964 46 H 0.034 0.966 47 H 0.069 0.931 48 H 0.088 0.912 49 H 0.089 0.911 50 H 0.085 0.915 51 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 2.949 29.453 -0.821 29.611 hybrid contribution -0.149 -0.828 0.195 0.864 sum 2.800 28.624 -0.626 28.767 Atomic orbital electron populations 1.22270 0.73668 1.05513 1.04985 1.45875 1.09593 1.04993 1.52000 1.23652 0.87757 0.90399 1.13896 1.15664 0.84514 0.81225 0.77159 1.90842 1.15989 1.82837 1.51543 1.48026 1.07328 1.06032 1.71732 1.22221 0.78159 0.97469 1.03976 1.22704 0.98293 0.93918 1.02281 1.22812 0.93796 0.99450 1.01182 1.22321 0.99018 0.78409 1.01618 1.74503 1.16169 1.03661 1.13485 1.75023 1.16373 1.02842 1.21913 1.22509 0.85609 0.88904 0.99984 1.58621 1.50303 0.95007 1.15131 1.22286 0.93403 0.93865 0.95986 1.21633 1.02013 0.91280 0.98898 1.21292 0.98250 0.97154 0.93570 1.19114 0.96039 0.88603 0.97103 1.21283 1.03361 0.94245 1.36434 0.92525 1.25018 0.95222 0.98336 0.95935 1.69970 1.21720 1.15019 1.46807 0.86591 0.81327 0.80939 0.79479 1.19728 1.21117 1.21129 1.21746 1.00334 0.91595 1.01184 1.22288 1.00817 0.97768 0.85084 0.89569 0.88215 0.88300 0.90041 0.90144 0.90350 0.89610 0.89446 0.90344 0.90838 0.89945 0.92586 0.91014 0.89792 0.91589 0.92396 0.96434 0.96598 0.93136 0.91214 0.91095 0.91510 0.93189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.81 10.55 59.85 0.63 1.44 16 2 N -0.43 -5.81 3.21 -122.53 -0.39 -6.20 16 3 C 0.11 1.49 7.75 -153.51 -1.19 0.30 16 4 C 0.63 7.87 7.83 -12.73 -0.10 7.77 16 5 O -0.54 -7.48 15.29 5.22 0.08 -7.40 16 6 N -0.60 -5.81 3.33 -171.97 -0.57 -6.38 16 7 C 0.10 0.84 5.53 -3.07 -0.02 0.83 16 8 C -0.13 -0.65 6.95 -24.90 -0.17 -0.82 16 9 C -0.13 -0.59 7.08 -24.59 -0.17 -0.77 16 10 C 0.11 0.74 6.91 -2.54 -0.02 0.72 16 11 N -0.23 -3.34 9.74 32.51 0.32 -3.03 16 12 N -0.31 -4.99 11.68 30.07 0.35 -4.64 16 13 C 0.39 5.71 6.63 -320.56 -2.13 3.59 16 14 N -0.46 -6.79 4.56 -174.93 -0.80 -7.59 16 15 C 0.07 1.09 5.07 -3.83 -0.02 1.07 16 16 C -0.10 -1.76 5.15 -26.65 -0.14 -1.90 16 17 C -0.08 -1.60 2.20 -90.50 -0.20 -1.80 16 18 C 0.03 0.69 4.45 -27.88 -0.12 0.57 16 19 C -0.51 -13.91 8.45 -34.44 -0.29 -14.20 16 20 H 0.06 1.49 7.08 -52.48 -0.37 1.12 16 21 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 22 N -0.90 -26.40 13.29 55.43 0.74 -25.66 16 23 Si 0.89 21.34 29.54 -169.99 -5.02 16.32 16 24 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 25 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 26 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 27 C -0.11 -1.74 5.38 -26.65 -0.14 -1.88 16 28 C 0.07 0.94 5.39 -3.84 -0.02 0.91 16 29 H 0.09 0.83 8.14 -51.93 -0.42 0.40 16 30 H 0.10 1.00 6.82 -51.93 -0.35 0.65 16 31 H 0.10 0.93 8.06 -51.93 -0.42 0.51 16 32 H 0.08 0.74 7.66 -51.93 -0.40 0.34 16 33 H 0.08 0.72 7.75 -51.93 -0.40 0.32 16 34 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 35 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 36 H 0.09 0.23 8.14 -51.93 -0.42 -0.19 16 37 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 38 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 39 H 0.08 0.60 8.03 -51.93 -0.42 0.18 16 40 H 0.06 0.90 8.04 -51.93 -0.42 0.48 16 41 H 0.07 1.08 8.10 -51.93 -0.42 0.66 16 42 H 0.08 1.58 7.05 -51.93 -0.37 1.21 16 43 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 44 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 45 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 46 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 47 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 48 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 49 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 50 H 0.07 0.83 8.10 -51.93 -0.42 0.41 16 51 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 403.59 15.07 6.08 6.08 Total: -1.00 -32.13 403.59 -12.03 -44.16 By element: Atomic # 1 Polarization: 5.66 SS G_CDS: -8.62 Total: -2.96 kcal Atomic # 6 Polarization: 1.49 SS G_CDS: -4.20 Total: -2.71 kcal Atomic # 7 Polarization: -53.13 SS G_CDS: -0.36 Total: -53.49 kcal Atomic # 8 Polarization: -7.48 SS G_CDS: 0.08 Total: -7.40 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -32.13 -12.03 -44.16 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000568865524.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.644 kcal (2) G-P(sol) polarization free energy of solvation -32.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.160 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds