Wall clock time and date at job start Wed Apr 1 2020 05:47:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46954 * 111.00190 * 2 1 4 4 C 1.53045 * 109.36613 * 183.18499 * 3 2 1 5 5 N 1.46957 * 109.36527 * 301.60283 * 4 3 2 6 6 C 1.38411 * 110.99993 * 183.18994 * 5 4 3 7 7 N 1.32487 * 119.21808 * 179.97438 * 6 5 4 8 8 C 1.32273 * 120.74457 * 179.97438 * 7 6 5 9 9 C 1.38605 * 119.19419 * 0.02562 * 8 7 6 10 10 C 1.50699 * 120.72226 * 179.72488 * 9 8 7 11 11 N 1.46903 * 109.47449 * 89.99753 * 10 9 8 12 12 C 1.47901 * 111.00001 * 69.87266 * 11 10 9 13 13 C 1.53996 * 107.06171 * 214.15824 * 12 11 10 14 14 C 1.54597 * 105.13729 * 1.22955 * 13 12 11 15 15 O 1.42899 * 110.71931 * 263.41858 * 14 13 12 16 16 C 1.50697 * 110.72560 * 140.31537 * 14 13 12 17 17 H 1.08002 * 120.00210 * 241.45189 * 16 14 13 18 18 C 1.37876 * 119.99878 * 61.44825 * 16 14 13 19 19 N 1.31520 * 120.00392 * 0.02562 * 18 16 14 20 20 Si 1.86804 * 119.99839 * 180.02562 * 18 16 14 21 21 H 1.48492 * 109.47207 * 359.97438 * 20 18 16 22 22 H 1.48495 * 109.47179 * 120.00326 * 20 18 16 23 23 H 1.48503 * 109.46937 * 240.00057 * 20 18 16 24 24 C 1.48541 * 110.99769 * 312.48222 * 11 10 9 25 25 C 1.38600 * 118.55909 * 359.97438 * 9 8 7 26 26 N 1.32277 * 119.19790 * 0.02562 * 25 9 8 27 27 C 1.46953 * 110.88577 * 59.31886 * 5 4 3 28 28 C 1.46957 * 110.99778 * 123.80194 * 2 1 3 29 29 H 1.08999 * 109.47159 * 60.00088 * 1 2 3 30 30 H 1.09000 * 109.47526 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47633 * 299.99932 * 1 2 3 32 32 H 1.09000 * 109.48913 * 63.22118 * 3 2 1 33 33 H 1.08994 * 109.50787 * 303.16673 * 3 2 1 34 34 H 1.09001 * 109.49053 * 181.62701 * 4 3 2 35 35 H 1.09004 * 109.50641 * 61.57742 * 4 3 2 36 36 H 1.08000 * 120.40821 * 179.97438 * 8 7 6 37 37 H 1.08995 * 109.47535 * 209.99778 * 10 9 8 38 38 H 1.09009 * 109.47144 * 330.00248 * 10 9 8 39 39 H 1.09001 * 109.91918 * 333.51558 * 12 11 10 40 40 H 1.09000 * 109.91665 * 94.60566 * 12 11 10 41 41 H 1.09004 * 110.30554 * 120.13962 * 13 12 11 42 42 H 1.08993 * 110.30833 * 242.30893 * 13 12 11 43 43 H 0.96698 * 114.00263 * 298.54757 * 15 14 13 44 44 H 0.96999 * 119.99661 * 179.97438 * 19 18 16 45 45 H 1.09000 * 110.66431 * 278.14870 * 24 11 10 46 46 H 1.08996 * 110.66882 * 41.28454 * 24 11 10 47 47 H 1.08000 * 120.40289 * 179.97438 * 25 9 8 48 48 H 1.09000 * 109.48926 * 60.64446 * 27 5 4 49 49 H 1.08995 * 109.49379 * 180.71355 * 27 5 4 50 50 H 1.09005 * 109.48812 * 296.77432 * 28 2 1 51 51 H 1.08999 * 109.49346 * 56.82071 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3719 0.0000 4 6 3.5234 1.3290 -0.0802 5 7 4.0500 0.5658 1.0598 6 6 5.4341 0.5658 1.0599 7 7 6.0808 -0.0771 2.0211 8 6 7.4030 -0.0970 2.0502 9 6 8.1111 0.5654 1.0598 10 6 9.6181 0.5702 1.0630 11 7 10.1131 -0.5812 0.2966 12 6 9.8444 -0.4116 -1.1478 13 6 9.5563 -1.8114 -1.7212 14 6 9.6474 -2.7698 -0.5116 15 8 10.9409 -3.3730 -0.4408 16 6 8.5729 -3.8239 -0.5842 17 1 7.8296 -3.8920 0.1964 18 6 8.5387 -4.7013 -1.6472 19 7 9.4440 -4.6187 -2.5976 20 14 7.2063 -6.0076 -1.7375 21 1 6.3173 -5.8905 -0.5539 22 1 6.4098 -5.8174 -2.9762 23 1 7.8332 -7.3537 -1.7539 24 6 9.4107 -1.8278 0.6955 25 6 7.4032 1.2279 0.0694 26 7 6.0809 1.2087 0.0988 27 6 3.5234 -0.8062 1.0599 28 6 1.9956 -0.7633 1.1401 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 1.6938 1.8773 0.9173 33 1 1.6014 1.9131 -0.8600 34 1 3.9178 2.3448 -0.0512 35 1 3.8257 0.8481 -1.0105 36 1 7.9246 -0.6224 2.8365 37 1 9.9796 1.4921 0.6076 38 1 9.9795 0.5059 2.0894 39 1 8.9779 0.2340 -1.2910 40 1 10.7154 0.0221 -1.6391 41 1 8.5569 -1.8441 -2.1552 42 1 10.3034 -2.0748 -2.4698 43 1 11.1664 -3.9118 -1.2115 44 1 9.4201 -5.2363 -3.3452 45 1 9.8514 -2.2447 1.6010 46 1 8.3459 -1.6415 0.8350 47 1 7.9248 1.7540 -0.7164 48 1 3.8253 -1.3116 0.1425 49 1 3.9177 -1.3471 1.9201 50 1 1.6937 -0.2821 2.0704 51 1 1.6009 -1.7789 1.1112 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592523387.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:47:54 Heat of formation + Delta-G solvation = 22.671735 kcal Electronic energy + Delta-G solvation = -32192.318277 eV Core-core repulsion = 28126.747369 eV Total energy + Delta-G solvation = -4065.570909 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.53419 -40.58646 -39.72603 -37.22070 -36.28800 -34.88456 -34.19710 -33.33164 -32.12085 -30.94703 -29.89825 -29.17526 -27.26245 -26.11552 -25.77710 -24.73085 -24.28598 -23.19692 -21.62999 -21.30710 -21.06069 -19.09166 -19.03085 -18.69980 -17.16339 -17.01536 -16.78674 -16.43151 -16.23903 -16.12556 -16.06937 -15.82597 -15.57376 -15.36022 -15.22111 -15.01466 -14.62265 -14.42000 -14.25507 -13.67770 -13.59692 -13.55785 -13.24237 -13.13818 -12.91355 -12.82016 -12.64474 -12.46000 -12.38374 -12.27588 -12.21516 -12.15130 -12.11297 -12.04458 -11.86764 -11.58994 -11.10732 -11.08722 -10.63629 -10.22890 -10.11463 -9.53785 -9.39110 -9.24823 -8.26325 -6.41107 -0.16015 0.06985 1.31401 1.35252 1.44770 2.01953 2.32396 2.66784 2.87414 2.98691 3.08198 3.23713 3.52471 3.64211 3.76203 3.81505 3.87527 3.91360 3.96895 4.05437 4.10692 4.14523 4.24308 4.27307 4.43626 4.44661 4.57396 4.57958 4.60944 4.71246 4.72153 4.75455 4.79509 4.84499 4.86494 4.91303 4.94245 5.01517 5.08816 5.17401 5.22241 5.45433 5.47018 5.54365 5.62916 5.72651 5.87810 5.94707 5.98473 6.11051 6.15410 6.25824 6.64316 7.04267 7.30820 7.46397 8.79044 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.009713 B = 0.003867 C = 0.003022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2882.156732 B = 7238.725820 C = 9261.734090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.565 5.565 3 C 0.062 3.938 4 C 0.077 3.923 5 N -0.464 5.464 6 C 0.472 3.528 7 N -0.547 5.547 8 C 0.179 3.821 9 C -0.244 4.244 10 C 0.097 3.903 11 N -0.503 5.503 12 C 0.038 3.962 13 C -0.119 4.119 14 C 0.239 3.761 15 O -0.588 6.588 16 C -0.560 4.560 17 H 0.045 0.955 18 C 0.035 3.965 19 N -0.907 5.907 20 Si 0.948 3.052 21 H -0.274 1.274 22 H -0.279 1.279 23 H -0.274 1.274 24 C 0.059 3.941 25 C 0.173 3.827 26 N -0.561 5.561 27 C 0.071 3.929 28 C 0.066 3.934 29 H 0.079 0.921 30 H 0.075 0.925 31 H 0.034 0.966 32 H 0.048 0.952 33 H 0.104 0.896 34 H 0.092 0.908 35 H 0.041 0.959 36 H 0.184 0.816 37 H 0.110 0.890 38 H 0.105 0.895 39 H 0.050 0.950 40 H 0.084 0.916 41 H 0.030 0.970 42 H 0.047 0.953 43 H 0.371 0.629 44 H 0.269 0.731 45 H 0.070 0.930 46 H 0.048 0.952 47 H 0.188 0.812 48 H 0.029 0.971 49 H 0.090 0.910 50 H 0.052 0.948 51 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.050 14.032 5.560 19.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.290 5.290 3 C -0.067 4.067 4 C -0.051 4.051 5 N -0.185 5.185 6 C 0.115 3.885 7 N -0.265 5.265 8 C 0.011 3.989 9 C -0.252 4.252 10 C -0.032 4.032 11 N -0.225 5.225 12 C -0.090 4.090 13 C -0.158 4.158 14 C 0.199 3.801 15 O -0.395 6.395 16 C -0.598 4.598 17 H 0.063 0.937 18 C -0.166 4.166 19 N -0.547 5.547 20 Si 0.774 3.226 21 H -0.199 1.199 22 H -0.205 1.205 23 H -0.199 1.199 24 C -0.069 4.069 25 C 0.007 3.993 26 N -0.280 5.280 27 C -0.055 4.055 28 C -0.062 4.062 29 H 0.098 0.902 30 H 0.093 0.907 31 H 0.053 0.947 32 H 0.066 0.934 33 H 0.123 0.877 34 H 0.111 0.889 35 H 0.060 0.940 36 H 0.201 0.799 37 H 0.128 0.872 38 H 0.123 0.877 39 H 0.068 0.932 40 H 0.102 0.898 41 H 0.049 0.951 42 H 0.066 0.934 43 H 0.219 0.781 44 H 0.078 0.922 45 H 0.088 0.912 46 H 0.066 0.934 47 H 0.205 0.795 48 H 0.047 0.953 49 H 0.109 0.891 50 H 0.070 0.930 51 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -12.498 14.241 6.072 19.897 hybrid contribution -0.534 -1.254 -0.928 1.649 sum -13.032 12.987 5.144 19.104 Atomic orbital electron populations 1.22385 0.85033 1.02974 1.01584 1.62166 1.09807 1.14144 1.42923 1.22240 0.92422 0.89551 1.02438 1.22098 0.94843 0.98536 0.89592 1.58735 1.00759 1.15945 1.43021 1.21246 0.91480 0.89395 0.86345 1.67983 1.10947 1.21969 1.25576 1.23367 0.88260 0.90966 0.96263 1.22359 1.01354 1.02499 0.98944 1.21428 0.85032 0.95290 1.01405 1.65135 1.51820 1.02123 1.03403 1.22942 1.00122 0.96759 0.89169 1.22673 0.98919 0.94957 0.99287 1.19568 0.80952 0.89116 0.90488 1.86124 1.36692 1.69024 1.47648 1.21847 1.13339 1.17187 1.07435 0.93713 1.25587 0.97592 0.98744 0.94724 1.69807 1.35468 1.38161 1.11245 0.85668 0.79553 0.79575 0.77843 1.19917 1.20521 1.19906 1.23121 0.95758 0.89732 0.98265 1.23402 0.88447 0.91966 0.95516 1.68352 1.11322 1.24135 1.24171 1.22233 0.96254 0.85584 1.01454 1.22143 0.91609 1.00025 0.92465 0.90204 0.90655 0.94727 0.93402 0.87737 0.88927 0.94027 0.79947 0.87190 0.87693 0.93185 0.89800 0.95083 0.93387 0.78055 0.92203 0.91192 0.93434 0.79482 0.95255 0.89125 0.92994 0.88281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 9.60 127.69 1.23 1.61 16 2 N -0.57 -11.37 4.97 -921.97 -4.58 -15.95 16 3 C 0.06 1.17 5.62 86.31 0.49 1.65 16 4 C 0.08 1.89 4.77 86.31 0.41 2.30 16 5 N -0.46 -13.29 4.77 -708.33 -3.38 -16.67 16 6 C 0.47 15.29 7.17 261.49 1.88 17.16 16 7 N -0.55 -17.97 9.72 -197.99 -1.92 -19.89 16 8 C 0.18 5.25 8.83 84.71 0.75 6.00 16 9 C -0.24 -6.65 3.95 -19.69 -0.08 -6.73 16 10 C 0.10 2.39 5.72 85.56 0.49 2.88 16 11 N -0.50 -17.22 5.54 -887.54 -4.91 -22.14 16 12 C 0.04 1.34 6.46 86.45 0.56 1.90 16 13 C -0.12 -5.53 5.26 31.47 0.17 -5.36 16 14 C 0.24 11.89 0.95 -10.34 -0.01 11.88 16 15 O -0.59 -31.11 13.09 -148.98 -1.95 -33.06 16 16 C -0.56 -30.75 8.14 25.60 0.21 -30.54 16 17 H 0.04 2.51 7.78 -2.91 -0.02 2.49 16 18 C 0.03 1.86 5.28 84.65 0.45 2.31 16 19 N -0.91 -49.31 11.00 21.45 0.24 -49.07 16 20 Si 0.95 43.38 29.54 68.60 2.03 45.41 16 21 H -0.27 -12.55 7.11 99.48 0.71 -11.85 16 22 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 23 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 24 C 0.06 2.44 5.22 86.65 0.45 2.89 16 25 C 0.17 4.78 9.51 84.71 0.81 5.59 16 26 N -0.56 -17.46 8.70 -197.99 -1.72 -19.18 16 27 C 0.07 1.97 5.46 86.31 0.47 2.45 16 28 C 0.07 1.38 5.62 86.31 0.49 1.87 16 29 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 30 H 0.07 0.97 8.13 -2.39 -0.02 0.95 16 31 H 0.03 0.44 8.14 -2.39 -0.02 0.42 16 32 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 33 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 34 H 0.09 2.21 7.80 -2.39 -0.02 2.19 16 35 H 0.04 1.20 8.03 -2.38 -0.02 1.18 16 36 H 0.18 4.58 8.06 -2.91 -0.02 4.56 16 37 H 0.11 2.13 8.04 -2.39 -0.02 2.11 16 38 H 0.10 2.23 8.10 -2.38 -0.02 2.21 16 39 H 0.05 1.58 4.94 -2.39 -0.01 1.57 16 40 H 0.08 2.71 8.14 -2.39 -0.02 2.69 16 41 H 0.03 1.55 7.84 -2.38 -0.02 1.53 16 42 H 0.05 2.35 7.98 -2.39 -0.02 2.34 16 43 H 0.37 20.10 7.46 -74.06 -0.55 19.54 16 44 H 0.27 13.88 8.31 -92.71 -0.77 13.11 16 45 H 0.07 2.91 8.14 -2.39 -0.02 2.89 16 46 H 0.05 1.98 4.76 -2.39 -0.01 1.97 16 47 H 0.19 4.10 7.22 -2.91 -0.02 4.08 16 48 H 0.03 0.95 8.14 -2.39 -0.02 0.93 16 49 H 0.09 2.62 7.64 -2.39 -0.02 2.60 16 50 H 0.05 1.03 8.14 -2.38 -0.02 1.01 16 51 H 0.10 1.82 8.13 -2.39 -0.02 1.80 16 Total: -1.00 -65.27 391.56 -7.09 -72.35 By element: Atomic # 1 Polarization: 39.98 SS G_CDS: 0.38 Total: 40.36 kcal Atomic # 6 Polarization: 9.10 SS G_CDS: 8.74 Total: 17.84 kcal Atomic # 7 Polarization: -126.62 SS G_CDS: -16.28 Total: -142.91 kcal Atomic # 8 Polarization: -31.11 SS G_CDS: -1.95 Total: -33.06 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 2.03 Total: 45.41 kcal Total: -65.27 -7.09 -72.35 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592523387.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.024 kcal (2) G-P(sol) polarization free energy of solvation -65.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.352 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds