Wall clock time and date at job start Wed Apr 1 2020 05:34:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 N 1.40086 * 126.03622 * 2 1 4 4 C 1.30837 * 108.20900 * 180.02562 * 3 2 1 5 5 C 1.39871 * 108.19733 * 359.77854 * 4 3 2 6 6 C 1.50704 * 126.03863 * 180.23096 * 5 4 3 7 7 C 1.52999 * 117.49935 * 8.77956 * 6 5 4 8 8 C 1.53006 * 60.00180 * 252.50990 * 7 6 5 9 9 C 1.34942 * 126.03956 * 180.02562 * 2 1 3 10 10 C 1.50706 * 126.12651 * 359.93799 * 9 2 1 11 11 N 1.46492 * 109.46781 * 90.02771 * 10 9 2 12 12 C 1.34777 * 119.99915 * 179.97438 * 11 10 9 13 13 O 1.21579 * 119.99852 * 0.02562 * 12 11 10 14 14 N 1.34778 * 120.00008 * 179.97438 * 12 11 10 15 15 C 1.46496 * 120.00012 * 179.97438 * 14 12 11 16 16 C 1.53349 * 109.41148 * 275.12519 * 15 14 12 17 17 C 1.53196 * 109.15353 * 178.68054 * 16 15 14 18 18 N 1.46928 * 108.89135 * 54.57497 * 17 16 15 19 19 C 1.36936 * 120.63013 * 126.29699 * 18 17 16 20 20 H 1.07999 * 120.00022 * 331.83633 * 19 18 17 21 21 C 1.38813 * 120.00005 * 151.82709 * 19 18 17 22 22 N 1.31618 * 120.00004 * 343.09585 * 21 19 18 23 23 Si 1.86806 * 119.99953 * 163.09475 * 21 19 18 24 24 H 1.48494 * 109.47083 * 60.00061 * 23 21 19 25 25 H 1.48500 * 109.46851 * 180.02562 * 23 21 19 26 26 H 1.48503 * 109.47024 * 300.00112 * 23 21 19 27 27 C 1.46924 * 118.73859 * 306.32337 * 18 17 16 28 28 C 1.53044 * 109.46161 * 155.00320 * 15 14 12 29 29 H 1.08999 * 109.47276 * 269.97217 * 1 2 3 30 30 H 1.09002 * 109.47285 * 29.97771 * 1 2 3 31 31 H 1.09000 * 109.47162 * 149.97077 * 1 2 3 32 32 H 1.07991 * 125.89954 * 180.02562 * 4 3 2 33 33 H 1.09003 * 115.54619 * 154.48980 * 6 5 4 34 34 H 1.09005 * 117.49837 * 359.97438 * 7 6 5 35 35 H 1.08997 * 117.49882 * 145.02247 * 7 6 5 36 36 H 1.08998 * 117.49583 * 252.51412 * 8 7 6 37 37 H 1.08999 * 117.49916 * 107.48553 * 8 7 6 38 38 H 1.08997 * 109.46925 * 330.02850 * 10 9 2 39 39 H 1.08995 * 109.46675 * 210.02897 * 10 9 2 40 40 H 0.97000 * 120.00373 * 0.02562 * 11 10 9 41 41 H 0.97000 * 120.00280 * 0.02562 * 14 12 11 42 42 H 1.09001 * 109.45989 * 35.03297 * 15 14 12 43 43 H 1.08998 * 109.68701 * 58.71543 * 16 15 14 44 44 H 1.09000 * 109.47234 * 298.51610 * 16 15 14 45 45 H 1.08996 * 109.58345 * 294.72319 * 17 16 15 46 46 H 1.08994 * 109.58644 * 174.43734 * 17 16 15 47 47 H 0.96996 * 119.99787 * 179.97438 * 22 21 19 48 48 H 1.09000 * 109.58664 * 173.39523 * 27 18 17 49 49 H 1.08996 * 109.58580 * 293.67452 * 27 18 17 50 50 H 1.08992 * 109.49619 * 61.41925 * 28 15 14 51 51 H 1.08999 * 109.52313 * 301.33938 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2891 1.1328 0.0000 4 6 3.5347 0.7322 -0.0006 5 6 3.5437 -0.6664 0.0042 6 6 4.7680 -1.5452 0.0102 7 6 6.1235 -0.8668 0.2184 8 6 5.7424 -1.4072 -1.1613 9 6 2.2589 -1.0912 -0.0005 10 6 1.7974 -2.5258 0.0002 11 7 1.6473 -2.9910 -1.3808 12 6 1.2418 -4.2527 -1.6265 13 8 1.0003 -5.0045 -0.7021 14 7 1.1032 -4.6806 -2.8970 15 6 0.6631 -6.0521 -3.1641 16 6 1.8746 -6.9916 -3.1315 17 6 1.4035 -8.4282 -3.3787 18 7 0.6396 -8.4691 -4.6332 19 6 0.9734 -9.3526 -5.6247 20 1 1.9944 -9.6894 -5.7267 21 6 -0.0007 -9.8154 -6.4988 22 7 -1.2743 -9.6854 -6.1933 23 14 0.4962 -10.6226 -8.1085 24 1 1.3238 -11.8227 -7.8256 25 1 -0.7216 -11.0257 -8.8566 26 1 1.2813 -9.6606 -8.9230 27 6 -0.4887 -7.5436 -4.8037 28 6 0.0008 -6.1158 -4.5424 29 1 -0.3634 -0.0005 1.0276 30 1 -0.3634 0.8902 -0.5135 31 1 -0.3633 -0.8897 -0.5143 32 1 4.4053 1.3712 -0.0003 33 1 4.6313 -2.5389 0.4368 34 1 6.1298 0.2152 0.3507 35 1 6.8789 -1.4141 0.7822 36 1 6.2471 -2.3101 -1.5051 37 1 5.4979 -0.6808 -1.9364 38 1 0.8391 -2.5989 0.5144 39 1 2.5335 -3.1440 0.5139 40 1 1.8404 -2.3913 -2.1183 41 1 1.2956 -4.0806 -3.6346 42 1 -0.0538 -6.3582 -2.4023 43 1 2.3605 -6.9306 -2.1577 44 1 2.5806 -6.7013 -3.9096 45 1 0.7687 -8.7515 -2.5538 46 1 2.2676 -9.0881 -3.4553 47 1 -1.9549 -10.0085 -6.8042 48 1 -0.8717 -7.6180 -5.8215 49 1 -1.2788 -7.7966 -4.0967 50 1 0.7244 -5.8335 -5.3070 51 1 -0.8458 -5.4299 -4.5718 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595498490.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:34:30 Heat of formation + Delta-G solvation = 95.748142 kcal Electronic energy + Delta-G solvation = -30485.213553 eV Core-core repulsion = 26422.811475 eV Total energy + Delta-G solvation = -4062.402078 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.84464 -39.93848 -37.52825 -37.37008 -35.18254 -34.34435 -33.32870 -32.18704 -31.00196 -30.05143 -29.25978 -27.19729 -26.41403 -24.76282 -23.27737 -22.60711 -22.30250 -21.97724 -20.75421 -20.62379 -19.76629 -19.43505 -18.25339 -17.09743 -16.57360 -16.31600 -16.09697 -15.64575 -15.27658 -14.86778 -14.68322 -14.48502 -14.43738 -14.17217 -13.71082 -13.61183 -13.49044 -13.15927 -13.04298 -12.96674 -12.65421 -12.44712 -12.32359 -12.14201 -11.79120 -11.45259 -11.17962 -11.11221 -10.90218 -10.85946 -10.71622 -10.62099 -10.50581 -10.28307 -10.16344 -10.03311 -9.79036 -9.69605 -9.53864 -9.29186 -8.62478 -8.55509 -8.43988 -6.68228 -5.79651 -3.21739 1.27989 2.08374 2.26411 2.88538 3.30665 3.38217 3.43863 3.44998 3.70907 4.05080 4.10402 4.33044 4.49463 4.51747 4.60897 4.75712 4.78112 4.81472 4.92560 4.99466 5.04779 5.29518 5.34250 5.36078 5.39137 5.42773 5.51143 5.60949 5.61769 5.77103 5.85217 5.89369 5.94555 6.08812 6.22713 6.24588 6.29185 6.35048 6.48603 6.55734 6.57852 6.60703 6.80704 6.87316 6.98674 7.08097 7.29881 7.31944 7.61643 7.79061 8.08217 8.44788 8.68963 9.20851 9.84103 10.41240 11.29331 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.018350 B = 0.002033 C = 0.001930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1525.483870 B =13767.557891 C =14504.302253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.097 3.903 2 N -0.363 5.363 3 N -0.287 5.287 4 C 0.049 3.951 5 C -0.181 4.181 6 C -0.078 4.078 7 C -0.175 4.175 8 C -0.172 4.172 9 C 0.069 3.931 10 C 0.208 3.792 11 N -0.748 5.748 12 C 0.704 3.296 13 O -0.589 6.589 14 N -0.737 5.737 15 C 0.169 3.831 16 C -0.139 4.139 17 C 0.147 3.853 18 N -0.593 5.593 19 C -0.252 4.252 20 H 0.065 0.935 21 C 0.002 3.998 22 N -0.904 5.904 23 Si 0.903 3.097 24 H -0.282 1.282 25 H -0.291 1.291 26 H -0.284 1.284 27 C 0.174 3.826 28 C -0.146 4.146 29 H 0.077 0.923 30 H 0.091 0.909 31 H 0.090 0.910 32 H 0.182 0.818 33 H 0.111 0.889 34 H 0.094 0.906 35 H 0.096 0.904 36 H 0.096 0.904 37 H 0.093 0.907 38 H 0.076 0.924 39 H 0.092 0.908 40 H 0.396 0.604 41 H 0.391 0.609 42 H 0.081 0.919 43 H 0.055 0.945 44 H 0.057 0.943 45 H 0.020 0.980 46 H 0.055 0.945 47 H 0.254 0.746 48 H 0.091 0.909 49 H 0.021 0.979 50 H 0.059 0.941 51 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.414 22.272 11.864 26.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 N -0.146 5.146 3 N -0.108 5.108 4 C -0.136 4.136 5 C -0.193 4.193 6 C -0.097 4.097 7 C -0.212 4.212 8 C -0.209 4.209 9 C -0.058 4.058 10 C 0.082 3.918 11 N -0.406 5.406 12 C 0.404 3.596 13 O -0.467 6.467 14 N -0.390 5.390 15 C 0.065 3.935 16 C -0.179 4.179 17 C 0.020 3.980 18 N -0.315 5.315 19 C -0.382 4.382 20 H 0.083 0.917 21 C -0.197 4.197 22 N -0.548 5.548 23 Si 0.733 3.267 24 H -0.209 1.209 25 H -0.217 1.217 26 H -0.211 1.211 27 C 0.048 3.952 28 C -0.186 4.186 29 H 0.096 0.904 30 H 0.110 0.890 31 H 0.108 0.892 32 H 0.199 0.801 33 H 0.129 0.871 34 H 0.112 0.888 35 H 0.114 0.886 36 H 0.114 0.886 37 H 0.112 0.888 38 H 0.094 0.906 39 H 0.110 0.890 40 H 0.230 0.770 41 H 0.224 0.776 42 H 0.100 0.900 43 H 0.074 0.926 44 H 0.075 0.925 45 H 0.038 0.962 46 H 0.074 0.926 47 H 0.064 0.936 48 H 0.109 0.891 49 H 0.039 0.961 50 H 0.078 0.922 51 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 7.042 22.482 12.637 26.734 hybrid contribution 0.895 -0.362 -1.502 1.785 sum 7.937 22.120 11.135 26.005 Atomic orbital electron populations 1.21937 0.73899 1.04842 1.03755 1.48425 1.06635 1.03144 1.56372 1.77400 1.01619 1.07880 1.23930 1.23700 0.95199 0.94315 1.00430 1.19096 0.92486 0.93163 1.14538 1.20231 0.87189 0.98648 1.03619 1.22967 0.97630 1.00634 1.00003 1.23008 1.02887 1.03333 0.91675 1.20701 0.90841 0.90078 1.04227 1.19455 1.02064 0.86447 0.83828 1.45101 1.74663 1.13077 1.07722 1.15949 0.78230 0.81340 0.84080 1.90934 1.57489 1.54926 1.43316 1.45551 1.72566 1.15686 1.05221 1.20989 0.96202 0.78247 0.98039 1.22444 0.97299 0.97831 1.00368 1.20876 0.95265 0.92668 0.89161 1.44081 1.34612 1.39490 1.13352 1.19148 0.92814 1.19727 1.06479 0.91702 1.25054 0.95258 0.98989 1.00372 1.70014 0.98934 1.49973 1.35888 0.86365 0.77235 0.79304 0.83834 1.20865 1.21656 1.21076 1.20740 0.88850 0.83374 1.02260 1.22538 0.99454 1.01946 0.94645 0.90403 0.89015 0.89163 0.80109 0.87141 0.88797 0.88563 0.88559 0.88830 0.90582 0.89005 0.77045 0.77601 0.90043 0.92640 0.92468 0.96166 0.92624 0.93556 0.89070 0.96061 0.92236 0.92817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.59 11.09 59.85 0.66 1.25 16 2 N -0.36 -3.28 4.01 -63.88 -0.26 -3.54 16 3 N -0.29 -2.98 12.58 30.62 0.39 -2.60 16 4 C 0.05 0.43 11.35 -17.36 -0.20 0.24 16 5 C -0.18 -1.59 5.76 -105.05 -0.61 -2.20 16 6 C -0.08 -0.61 5.95 -91.77 -0.55 -1.15 16 7 C -0.18 -1.12 10.02 -26.73 -0.27 -1.39 16 8 C -0.17 -1.22 10.24 -26.72 -0.27 -1.50 16 9 C 0.07 0.62 6.30 -82.26 -0.52 0.10 16 10 C 0.21 1.95 5.47 -5.19 -0.03 1.92 16 11 N -0.75 -7.48 5.55 -66.42 -0.37 -7.85 16 12 C 0.70 9.86 8.53 -86.92 -0.74 9.12 16 13 O -0.59 -10.70 16.00 5.30 0.08 -10.62 16 14 N -0.74 -9.97 5.08 -58.48 -0.30 -10.27 16 15 C 0.17 2.89 2.42 -67.73 -0.16 2.72 16 16 C -0.14 -2.52 5.68 -26.45 -0.15 -2.67 16 17 C 0.15 3.16 6.51 -3.71 -0.02 3.13 16 18 N -0.59 -14.70 2.99 -172.32 -0.52 -15.21 16 19 C -0.25 -6.85 9.58 -15.06 -0.14 -6.99 16 20 H 0.07 1.73 7.88 -52.49 -0.41 1.32 16 21 C 0.00 0.05 4.92 -17.43 -0.09 -0.04 16 22 N -0.90 -25.92 11.20 55.49 0.62 -25.30 16 23 Si 0.90 21.44 29.59 -169.99 -5.03 16.41 16 24 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 25 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 26 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 27 C 0.17 4.04 5.30 -3.71 -0.02 4.02 16 28 C -0.15 -2.61 5.55 -26.61 -0.15 -2.76 16 29 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.09 0.49 7.66 -51.93 -0.40 0.10 16 32 H 0.18 1.13 7.20 -52.49 -0.38 0.76 16 33 H 0.11 0.90 7.41 -51.93 -0.38 0.52 16 34 H 0.09 0.52 6.98 -51.93 -0.36 0.16 16 35 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16 38 H 0.08 0.71 7.72 -51.93 -0.40 0.31 16 39 H 0.09 0.91 7.32 -51.93 -0.38 0.53 16 40 H 0.40 3.29 8.48 -40.82 -0.35 2.94 16 41 H 0.39 4.25 8.62 -40.82 -0.35 3.90 16 42 H 0.08 1.58 7.58 -51.93 -0.39 1.19 16 43 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 44 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 45 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 46 H 0.06 1.17 7.93 -51.93 -0.41 0.75 16 47 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 48 H 0.09 2.35 6.06 -51.93 -0.31 2.04 16 49 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 50 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 51 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 411.71 15.07 6.20 6.20 Total: -1.00 -33.02 411.71 -10.74 -43.76 By element: Atomic # 1 Polarization: 13.53 SS G_CDS: -8.32 Total: 5.21 kcal Atomic # 6 Polarization: 7.05 SS G_CDS: -3.25 Total: 3.80 kcal Atomic # 7 Polarization: -64.34 SS G_CDS: -0.43 Total: -64.77 kcal Atomic # 8 Polarization: -10.70 SS G_CDS: 0.08 Total: -10.62 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.03 Total: 16.41 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -33.02 -10.74 -43.76 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595498490.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.508 kcal (2) G-P(sol) polarization free energy of solvation -33.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.759 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds