Wall clock time and date at job start Wed Apr 1 2020 05:34:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 N 1.40086 * 126.03622 * 2 1 4 4 C 1.30837 * 108.20900 * 180.02562 * 3 2 1 5 5 C 1.39871 * 108.19733 * 359.77854 * 4 3 2 6 6 C 1.50704 * 126.03863 * 180.23096 * 5 4 3 7 7 C 1.52999 * 117.49935 * 8.77956 * 6 5 4 8 8 C 1.53006 * 60.00180 * 252.50990 * 7 6 5 9 9 C 1.34942 * 126.03956 * 180.02562 * 2 1 3 10 10 C 1.50706 * 126.12651 * 359.93799 * 9 2 1 11 11 N 1.46492 * 109.46781 * 90.02771 * 10 9 2 12 12 C 1.34777 * 119.99915 * 179.97438 * 11 10 9 13 13 O 1.21579 * 119.99852 * 0.02562 * 12 11 10 14 14 N 1.34778 * 120.00008 * 179.97438 * 12 11 10 15 15 C 1.46496 * 120.00012 * 179.97438 * 14 12 11 16 16 C 1.53349 * 109.41148 * 275.12519 * 15 14 12 17 17 C 1.53196 * 109.15353 * 178.68054 * 16 15 14 18 18 N 1.46928 * 108.89135 * 54.57497 * 17 16 15 19 19 C 1.36936 * 120.63013 * 126.29699 * 18 17 16 20 20 H 1.07999 * 120.00022 * 331.83633 * 19 18 17 21 21 C 1.38813 * 120.00005 * 151.82709 * 19 18 17 22 22 N 1.31618 * 120.00004 * 343.09585 * 21 19 18 23 23 Si 1.86806 * 119.99953 * 163.09475 * 21 19 18 24 24 H 1.48494 * 109.47083 * 60.00061 * 23 21 19 25 25 H 1.48500 * 109.46851 * 180.02562 * 23 21 19 26 26 H 1.48503 * 109.47024 * 300.00112 * 23 21 19 27 27 C 1.46924 * 118.73859 * 306.32337 * 18 17 16 28 28 C 1.53044 * 109.46161 * 155.00320 * 15 14 12 29 29 H 1.08999 * 109.47276 * 269.97217 * 1 2 3 30 30 H 1.09002 * 109.47285 * 29.97771 * 1 2 3 31 31 H 1.09000 * 109.47162 * 149.97077 * 1 2 3 32 32 H 1.07991 * 125.89954 * 180.02562 * 4 3 2 33 33 H 1.09003 * 115.54619 * 154.48980 * 6 5 4 34 34 H 1.09005 * 117.49837 * 359.97438 * 7 6 5 35 35 H 1.08997 * 117.49882 * 145.02247 * 7 6 5 36 36 H 1.08998 * 117.49583 * 252.51412 * 8 7 6 37 37 H 1.08999 * 117.49916 * 107.48553 * 8 7 6 38 38 H 1.08997 * 109.46925 * 330.02850 * 10 9 2 39 39 H 1.08995 * 109.46675 * 210.02897 * 10 9 2 40 40 H 0.97000 * 120.00373 * 0.02562 * 11 10 9 41 41 H 0.97000 * 120.00280 * 0.02562 * 14 12 11 42 42 H 1.09001 * 109.45989 * 35.03297 * 15 14 12 43 43 H 1.08998 * 109.68701 * 58.71543 * 16 15 14 44 44 H 1.09000 * 109.47234 * 298.51610 * 16 15 14 45 45 H 1.08996 * 109.58345 * 294.72319 * 17 16 15 46 46 H 1.08994 * 109.58644 * 174.43734 * 17 16 15 47 47 H 0.96996 * 119.99787 * 179.97438 * 22 21 19 48 48 H 1.09000 * 109.58664 * 173.39523 * 27 18 17 49 49 H 1.08996 * 109.58580 * 293.67452 * 27 18 17 50 50 H 1.08992 * 109.49619 * 61.41925 * 28 15 14 51 51 H 1.08999 * 109.52313 * 301.33938 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2891 1.1328 0.0000 4 6 3.5347 0.7322 -0.0006 5 6 3.5437 -0.6664 0.0042 6 6 4.7680 -1.5452 0.0102 7 6 6.1235 -0.8668 0.2184 8 6 5.7424 -1.4072 -1.1613 9 6 2.2589 -1.0912 -0.0005 10 6 1.7974 -2.5258 0.0002 11 7 1.6473 -2.9910 -1.3808 12 6 1.2418 -4.2527 -1.6265 13 8 1.0003 -5.0045 -0.7021 14 7 1.1032 -4.6806 -2.8970 15 6 0.6631 -6.0521 -3.1641 16 6 1.8746 -6.9916 -3.1315 17 6 1.4035 -8.4282 -3.3787 18 7 0.6396 -8.4691 -4.6332 19 6 0.9734 -9.3526 -5.6247 20 1 1.9944 -9.6894 -5.7267 21 6 -0.0007 -9.8154 -6.4988 22 7 -1.2743 -9.6854 -6.1933 23 14 0.4962 -10.6226 -8.1085 24 1 1.3238 -11.8227 -7.8256 25 1 -0.7216 -11.0257 -8.8566 26 1 1.2813 -9.6606 -8.9230 27 6 -0.4887 -7.5436 -4.8037 28 6 0.0008 -6.1158 -4.5424 29 1 -0.3634 -0.0005 1.0276 30 1 -0.3634 0.8902 -0.5135 31 1 -0.3633 -0.8897 -0.5143 32 1 4.4053 1.3712 -0.0003 33 1 4.6313 -2.5389 0.4368 34 1 6.1298 0.2152 0.3507 35 1 6.8789 -1.4141 0.7822 36 1 6.2471 -2.3101 -1.5051 37 1 5.4979 -0.6808 -1.9364 38 1 0.8391 -2.5989 0.5144 39 1 2.5335 -3.1440 0.5139 40 1 1.8404 -2.3913 -2.1183 41 1 1.2956 -4.0806 -3.6346 42 1 -0.0538 -6.3582 -2.4023 43 1 2.3605 -6.9306 -2.1577 44 1 2.5806 -6.7013 -3.9096 45 1 0.7687 -8.7515 -2.5538 46 1 2.2676 -9.0881 -3.4553 47 1 -1.9549 -10.0085 -6.8042 48 1 -0.8717 -7.6180 -5.8215 49 1 -1.2788 -7.7966 -4.0967 50 1 0.7244 -5.8335 -5.3070 51 1 -0.8458 -5.4299 -4.5718 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595498490.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:34:29 Heat of formation + Delta-G solvation = 74.457536 kcal Electronic energy + Delta-G solvation = -30486.136783 eV Core-core repulsion = 26422.811475 eV Total energy + Delta-G solvation = -4063.325308 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.51173 -41.11636 -39.09611 -37.92169 -36.30523 -35.77863 -34.06665 -33.78099 -32.10234 -31.58940 -30.82476 -27.80693 -27.42717 -26.43141 -23.96479 -23.87584 -23.59737 -23.12245 -21.84489 -21.35251 -21.03363 -20.45287 -19.42295 -18.64441 -17.73501 -17.22246 -16.83664 -16.79193 -16.39429 -16.20922 -15.78974 -15.51201 -15.35353 -15.28961 -15.06375 -14.95022 -14.73751 -14.56890 -14.08855 -14.01706 -13.68234 -13.51387 -13.24795 -13.18494 -12.98046 -12.76045 -12.56256 -12.53001 -12.27922 -12.22238 -12.02045 -11.84737 -11.79193 -11.55595 -11.50701 -11.41277 -11.24340 -11.16686 -10.53770 -10.40335 -10.35470 -9.76615 -9.19169 -8.69090 -7.86532 -5.32009 0.57370 1.47565 1.49828 1.51352 1.58485 1.59193 1.90331 2.17463 2.53193 3.14987 3.26631 3.34056 3.38961 3.51659 3.69071 3.91062 3.92871 4.07934 4.09025 4.19728 4.22506 4.33862 4.36291 4.37338 4.38871 4.48817 4.52800 4.65353 4.67826 4.76254 4.83562 4.88310 4.88673 5.04327 5.06965 5.09780 5.16512 5.18280 5.32146 5.34010 5.35643 5.36323 5.49229 5.61212 5.61752 5.66101 5.72003 5.93166 6.00380 6.40538 6.64043 7.08543 7.16063 7.59319 7.85825 8.38586 9.20433 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.018350 B = 0.002033 C = 0.001930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1525.483870 B =13767.557891 C =14504.302253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -0.366 5.366 3 N -0.313 5.313 4 C 0.046 3.954 5 C -0.183 4.183 6 C -0.090 4.090 7 C -0.166 4.166 8 C -0.171 4.171 9 C 0.064 3.936 10 C 0.214 3.786 11 N -0.727 5.727 12 C 0.706 3.294 13 O -0.630 6.630 14 N -0.725 5.725 15 C 0.182 3.818 16 C -0.123 4.123 17 C 0.144 3.856 18 N -0.609 5.609 19 C -0.264 4.264 20 H 0.067 0.933 21 C -0.050 4.050 22 N -0.935 5.935 23 Si 0.968 3.032 24 H -0.277 1.277 25 H -0.295 1.295 26 H -0.276 1.276 27 C 0.178 3.822 28 C -0.127 4.127 29 H 0.087 0.913 30 H 0.099 0.901 31 H 0.096 0.904 32 H 0.203 0.797 33 H 0.104 0.896 34 H 0.104 0.896 35 H 0.103 0.897 36 H 0.096 0.904 37 H 0.094 0.906 38 H 0.077 0.923 39 H 0.087 0.913 40 H 0.408 0.592 41 H 0.409 0.591 42 H 0.058 0.942 43 H 0.060 0.940 44 H 0.064 0.936 45 H 0.007 0.993 46 H 0.056 0.944 47 H 0.251 0.749 48 H 0.062 0.938 49 H -0.005 1.005 50 H 0.069 0.931 51 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.939 24.132 11.539 28.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.149 5.149 3 N -0.135 5.135 4 C -0.138 4.138 5 C -0.195 4.195 6 C -0.109 4.109 7 C -0.203 4.203 8 C -0.209 4.209 9 C -0.063 4.063 10 C 0.088 3.912 11 N -0.384 5.384 12 C 0.406 3.594 13 O -0.511 6.511 14 N -0.379 5.379 15 C 0.077 3.923 16 C -0.163 4.163 17 C 0.018 3.982 18 N -0.333 5.333 19 C -0.394 4.394 20 H 0.085 0.915 21 C -0.245 4.245 22 N -0.581 5.581 23 Si 0.796 3.204 24 H -0.203 1.203 25 H -0.221 1.221 26 H -0.202 1.202 27 C 0.052 3.948 28 C -0.167 4.167 29 H 0.106 0.894 30 H 0.118 0.882 31 H 0.115 0.885 32 H 0.219 0.781 33 H 0.122 0.878 34 H 0.123 0.877 35 H 0.121 0.879 36 H 0.114 0.886 37 H 0.112 0.888 38 H 0.095 0.905 39 H 0.105 0.895 40 H 0.244 0.756 41 H 0.245 0.755 42 H 0.076 0.924 43 H 0.078 0.922 44 H 0.083 0.917 45 H 0.025 0.975 46 H 0.075 0.925 47 H 0.060 0.940 48 H 0.081 0.919 49 H 0.013 0.987 50 H 0.088 0.912 51 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 8.600 24.415 12.308 28.662 hybrid contribution 0.430 -0.931 -1.309 1.663 sum 9.030 23.484 11.000 27.460 Atomic orbital electron populations 1.22143 0.72608 1.05547 1.04682 1.48638 1.07454 1.02754 1.56069 1.77363 1.02428 1.08780 1.24940 1.24074 0.95455 0.94621 0.99686 1.19266 0.92724 0.93398 1.14113 1.20226 0.87562 0.98511 1.04638 1.23062 0.96594 1.01299 0.99306 1.23016 1.02533 1.03455 0.91867 1.20620 0.91124 0.89754 1.04846 1.19404 1.02023 0.86684 0.83105 1.44864 1.73202 1.11754 1.08621 1.15987 0.77960 0.81999 0.83441 1.90920 1.59275 1.56400 1.44544 1.45126 1.72395 1.14521 1.05904 1.20549 0.95163 0.79896 0.96692 1.22235 0.97669 0.95684 1.00748 1.20966 0.94659 0.95089 0.87478 1.44341 1.35072 1.39740 1.14109 1.19478 0.92963 1.19837 1.07083 0.91539 1.25813 0.95214 1.00075 1.03409 1.70175 0.99829 1.51325 1.36797 0.85331 0.76641 0.78513 0.79880 1.20323 1.22102 1.20159 1.20569 0.88154 0.86290 0.99803 1.22245 1.00504 0.98615 0.95321 0.89404 0.88237 0.88530 0.78054 0.87786 0.87722 0.87879 0.88564 0.88760 0.90472 0.89482 0.75611 0.75543 0.92390 0.92156 0.91683 0.97470 0.92537 0.94024 0.91916 0.98672 0.91246 0.90497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.96 11.09 127.77 1.42 2.38 16 2 N -0.37 -6.07 4.01 -356.03 -1.43 -7.50 16 3 N -0.31 -6.05 12.58 -57.03 -0.72 -6.76 16 4 C 0.05 0.74 11.35 85.24 0.97 1.70 16 5 C -0.18 -2.93 5.76 -20.14 -0.12 -3.05 16 6 C -0.09 -1.27 5.95 -11.54 -0.07 -1.34 16 7 C -0.17 -1.77 10.02 30.60 0.31 -1.47 16 8 C -0.17 -2.12 10.24 30.60 0.31 -1.81 16 9 C 0.06 1.06 6.30 41.41 0.26 1.32 16 10 C 0.21 3.71 5.47 85.64 0.47 4.17 16 11 N -0.73 -13.12 5.55 -482.32 -2.68 -15.80 16 12 C 0.71 18.57 8.53 179.05 1.53 20.10 16 13 O -0.63 -22.41 16.00 -3.97 -0.06 -22.48 16 14 N -0.73 -17.99 5.08 -457.19 -2.32 -20.31 16 15 C 0.18 6.01 2.42 45.12 0.11 6.12 16 16 C -0.12 -4.32 5.68 30.78 0.17 -4.15 16 17 C 0.14 6.21 6.51 86.36 0.56 6.77 16 18 N -0.61 -30.53 2.99 -699.11 -2.09 -32.63 16 19 C -0.26 -14.39 9.58 84.03 0.81 -13.58 16 20 H 0.07 3.53 7.88 -2.91 -0.02 3.51 16 21 C -0.05 -2.75 4.92 84.86 0.42 -2.33 16 22 N -0.94 -54.86 11.20 21.65 0.24 -54.62 16 23 Si 0.97 44.25 29.59 68.60 2.03 46.28 16 24 H -0.28 -12.34 7.11 99.48 0.71 -11.64 16 25 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 26 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 27 C 0.18 8.40 5.30 86.36 0.46 8.86 16 28 C -0.13 -4.40 5.55 30.67 0.17 -4.22 16 29 H 0.09 0.75 8.14 -2.39 -0.02 0.74 16 30 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.10 0.89 7.66 -2.39 -0.02 0.87 16 32 H 0.20 2.07 7.20 -2.92 -0.02 2.05 16 33 H 0.10 1.59 7.41 -2.39 -0.02 1.57 16 34 H 0.10 0.89 6.98 -2.38 -0.02 0.87 16 35 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 36 H 0.10 1.18 8.14 -2.39 -0.02 1.17 16 37 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 38 H 0.08 1.36 7.72 -2.39 -0.02 1.34 16 39 H 0.09 1.65 7.32 -2.39 -0.02 1.63 16 40 H 0.41 5.70 8.48 -92.71 -0.79 4.91 16 41 H 0.41 7.55 8.62 -92.71 -0.80 6.75 16 42 H 0.06 2.24 7.58 -2.39 -0.02 2.22 16 43 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 44 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 45 H 0.01 0.33 8.14 -2.39 -0.02 0.31 16 46 H 0.06 2.37 7.93 -2.39 -0.02 2.35 16 47 H 0.25 14.25 8.31 -92.71 -0.77 13.48 16 48 H 0.06 3.31 6.06 -2.39 -0.01 3.30 16 49 H 0.00 -0.25 8.14 -2.39 -0.02 -0.27 16 50 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 51 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 Total: -1.00 -71.75 411.71 0.11 -71.64 By element: Atomic # 1 Polarization: 23.33 SS G_CDS: -0.63 Total: 22.69 kcal Atomic # 6 Polarization: 11.71 SS G_CDS: 7.77 Total: 19.48 kcal Atomic # 7 Polarization: -128.62 SS G_CDS: -9.00 Total: -137.62 kcal Atomic # 8 Polarization: -22.41 SS G_CDS: -0.06 Total: -22.48 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 2.03 Total: 46.28 kcal Total: -71.75 0.11 -71.64 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595498490.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.099 kcal (2) G-P(sol) polarization free energy of solvation -71.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.642 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds