Wall clock time and date at job start Wed Apr 1 2020 06:15:14
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46501 * 1
3 3 C 1.46498 * 119.99808 * 2 1
4 4 C 1.38996 * 120.00297 * 179.97438 * 2 1 3
5 5 C 1.39137 * 119.70903 * 5.00006 * 4 2 1
6 6 C 1.38298 * 119.10148 * 180.02562 * 5 4 2
7 7 C 1.38878 * 118.50681 * 359.97438 * 6 5 4
8 8 C 1.50693 * 120.33658 * 179.97438 * 7 6 5
9 9 N 1.46509 * 109.47258 * 90.00192 * 8 7 6
10 10 C 1.34774 * 119.99807 * 179.72359 * 9 8 7
11 11 O 1.21584 * 120.00140 * 355.18628 * 10 9 8
12 12 N 1.34777 * 119.99513 * 175.18991 * 10 9 8
13 13 C 1.47082 * 120.87935 * 184.71787 * 12 10 9
14 14 C 1.53693 * 108.27774 * 128.74970 * 13 12 10
15 15 N 1.46902 * 109.25351 * 54.08172 * 14 13 12
16 16 C 1.46907 * 110.99965 * 172.60497 * 15 14 13
17 17 C 1.50703 * 109.47048 * 294.30394 * 16 15 14
18 18 H 1.07997 * 120.00040 * 359.97438 * 17 16 15
19 19 C 1.37880 * 119.99730 * 179.97438 * 17 16 15
20 20 N 1.31513 * 120.00006 * 179.97438 * 19 17 16
21 21 Si 1.86801 * 120.00021 * 0.02562 * 19 17 16
22 22 H 1.48501 * 109.47119 * 89.99911 * 21 19 17
23 23 H 1.48504 * 109.46923 * 209.99710 * 21 19 17
24 24 H 1.48497 * 109.47203 * 329.99500 * 21 19 17
25 25 C 1.46893 * 111.27197 * 296.75343 * 15 14 13
26 26 C 1.47073 * 120.88291 * 4.99131 * 12 10 9
27 27 C 1.38030 * 119.32587 * 0.25289 * 7 6 5
28 28 N 1.31969 * 120.85685 * 359.45578 * 27 7 6
29 29 H 1.08997 * 109.46893 * 269.99771 * 1 2 3
30 30 H 1.09002 * 109.46862 * 30.00386 * 1 2 3
31 31 H 1.09003 * 109.46729 * 150.00183 * 1 2 3
32 32 H 1.08999 * 109.47796 * 269.99843 * 3 2 1
33 33 H 1.09008 * 109.47357 * 30.00232 * 3 2 1
34 34 H 1.09005 * 109.47624 * 149.99456 * 3 2 1
35 35 H 1.08007 * 120.44703 * 0.02562 * 5 4 2
36 36 H 1.08001 * 120.74590 * 180.02562 * 6 5 4
37 37 H 1.08993 * 109.47117 * 330.00010 * 8 7 6
38 38 H 1.09004 * 109.46911 * 209.99718 * 8 7 6
39 39 H 0.96996 * 119.99495 * 0.02562 * 9 8 7
40 40 H 1.08998 * 109.62540 * 248.52006 * 13 12 10
41 41 H 1.09000 * 109.62874 * 9.10361 * 13 12 10
42 42 H 1.09000 * 109.65181 * 294.08080 * 14 13 12
43 43 H 1.09001 * 109.42356 * 173.94297 * 14 13 12
44 44 H 1.08998 * 109.46929 * 54.30492 * 16 15 14
45 45 H 1.08995 * 109.47360 * 174.30423 * 16 15 14
46 46 H 0.96998 * 120.00504 * 180.02562 * 20 19 17
47 47 H 1.08995 * 109.49798 * 303.14495 * 25 15 14
48 48 H 1.08998 * 109.49542 * 183.06044 * 25 15 14
49 49 H 1.08998 * 109.63441 * 350.90223 * 26 12 10
50 50 H 1.08997 * 109.63028 * 111.48100 * 26 12 10
51 51 H 1.08002 * 119.56719 * 179.74626 * 27 7 6
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.1975 1.2687 0.0000
4 6 2.1600 -1.2037 0.0005
5 6 1.4623 -2.4029 -0.1043
6 6 2.1664 -3.5932 -0.1019
7 6 3.5502 -3.5445 0.0050
8 6 4.3583 -4.8165 0.0123
9 7 4.7245 -5.1703 -1.3614
10 6 5.4583 -6.2753 -1.5998
11 8 5.8904 -6.9302 -0.6710
12 7 5.7132 -6.6543 -2.8678
13 6 6.4231 -7.9108 -3.1519
14 6 5.5996 -8.7089 -4.1751
15 7 5.3366 -7.8656 -5.3489
16 6 4.7045 -8.6420 -6.4240
17 6 5.6724 -9.6808 -6.9292
18 1 6.6585 -9.7564 -6.4954
19 6 5.2988 -10.5347 -7.9453
20 7 6.1436 -11.4409 -8.3866
21 14 3.5934 -10.4034 -8.6961
22 1 3.6276 -9.4569 -9.8399
23 1 3.1583 -11.7407 -9.1731
24 1 2.6386 -9.9083 -7.6722
25 6 4.5203 -6.6972 -4.9935
26 6 5.2942 -5.8196 -4.0039
27 6 4.1774 -2.3195 0.1104
28 7 3.4803 -1.1990 0.0998
29 1 -0.3633 0.0000 1.0276
30 1 -0.3633 0.8900 -0.5139
31 1 -0.3633 -0.8900 -0.5138
32 1 2.3792 1.5835 -1.0276
33 1 1.6084 2.0284 0.5139
34 1 3.1499 1.1385 0.5139
35 1 0.3854 -2.4041 -0.1863
36 1 1.6518 -4.5393 -0.1823
37 1 3.7661 -5.6206 0.4491
38 1 5.2626 -4.6690 0.6029
39 1 4.4425 -4.6069 -2.0989
40 1 7.4083 -7.6899 -3.5625
41 1 6.5272 -8.4883 -2.2334
42 1 4.6539 -9.0136 -3.7270
43 1 6.1594 -9.5929 -4.4806
44 1 3.8111 -9.1341 -6.0397
45 1 4.4290 -7.9746 -7.2405
46 1 5.8810 -12.0414 -9.1017
47 1 3.5897 -7.0298 -4.5339
48 1 4.2975 -6.1222 -5.8922
49 1 4.6517 -5.0138 -3.6490
50 1 6.1730 -5.4016 -4.4949
51 1 5.2531 -2.2773 0.1979
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000601554319.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 06:15:14
Heat of formation + Delta-G solvation = 48.760768 kcal
Electronic energy + Delta-G solvation = -30006.826603 eV
Core-core repulsion = 25942.387000 eV
Total energy + Delta-G solvation = -4064.439603 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.206 amu
Computer time = 0.80 seconds
Orbital eigenvalues (eV)
-40.82421 -40.11524 -37.83523 -37.13082 -34.96294 -34.44988 -32.79139 -32.35633
-31.32324 -30.53557 -28.74050 -28.70156 -27.00651 -25.57477 -24.40647 -23.54267
-23.14587 -21.87508 -21.40139 -20.61083 -19.37098 -18.15817 -17.81267 -17.13776
-16.83414 -16.28622 -15.77217 -15.48808 -15.42842 -15.04146 -14.72436 -14.60293
-14.49718 -14.37710 -14.12195 -13.71250 -13.61256 -13.54286 -13.37855 -13.30656
-13.06452 -12.72337 -12.57425 -12.45305 -12.38864 -12.16041 -11.84312 -11.59516
-11.22622 -10.93893 -10.77900 -10.56327 -10.49212 -10.34134 -10.09191 -9.97140
-9.87660 -9.75556 -9.33540 -9.14700 -8.60404 -8.35456 -7.96877 -7.45519
-6.08401 -4.06301 0.87439 1.01637 2.46701 2.78115 3.25314 3.31410
3.33324 3.34323 3.53462 4.01134 4.09956 4.38515 4.41730 4.50901
4.60912 4.63336 4.68742 4.77715 4.83254 4.94048 5.09282 5.14407
5.18050 5.21628 5.26350 5.30571 5.35996 5.43498 5.51004 5.53429
5.62837 5.65205 5.78196 5.89134 5.99184 5.99619 6.09363 6.18797
6.37630 6.43492 6.45659 6.51656 6.61811 6.81289 6.90150 6.93367
7.06238 7.52884 7.75493 7.80209 7.95566 8.02918 8.60439 8.68535
8.99638 9.52811 11.04473
Molecular weight = 347.21amu
Principal moments of inertia in cm(-1)
A = 0.015488 B = 0.001973 C = 0.001821
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1807.459032 B =14186.485985 C =15369.337106
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.094 3.906
2 N -0.618 5.618
3 C 0.098 3.902
4 C 0.405 3.595
5 C -0.242 4.242
6 C -0.012 4.012
7 C -0.221 4.221
8 C 0.194 3.806
9 N -0.748 5.748
10 C 0.707 3.293
11 O -0.595 6.595
12 N -0.626 5.626
13 C 0.134 3.866
14 C 0.050 3.950
15 N -0.526 5.526
16 C 0.163 3.837
17 C -0.511 4.511
18 H 0.082 0.918
19 C 0.069 3.931
20 N -0.898 5.898
21 Si 0.875 3.125
22 H -0.276 1.276
23 H -0.286 1.286
24 H -0.269 1.269
25 C 0.038 3.962
26 C 0.120 3.880
27 C 0.172 3.828
28 N -0.543 5.543
29 H 0.053 0.947
30 H 0.072 0.928
31 H 0.072 0.928
32 H 0.048 0.952
33 H 0.062 0.938
34 H 0.080 0.920
35 H 0.133 0.867
36 H 0.135 0.865
37 H 0.071 0.929
38 H 0.074 0.926
39 H 0.395 0.605
40 H 0.072 0.928
41 H 0.090 0.910
42 H 0.025 0.975
43 H 0.103 0.897
44 H -0.012 1.012
45 H 0.025 0.975
46 H 0.264 0.736
47 H 0.027 0.973
48 H 0.080 0.920
49 H 0.069 0.931
50 H 0.077 0.923
51 H 0.157 0.843
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -11.482 24.531 18.136 32.596
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.050 4.050
2 N -0.332 5.332
3 C -0.045 4.045
4 C 0.171 3.829
5 C -0.267 4.267
6 C -0.038 4.038
7 C -0.226 4.226
8 C 0.070 3.930
9 N -0.407 5.407
10 C 0.409 3.591
11 O -0.474 6.474
12 N -0.363 5.363
13 C 0.011 3.989
14 C -0.079 4.079
15 N -0.250 5.250
16 C 0.037 3.963
17 C -0.549 4.549
18 H 0.100 0.900
19 C -0.133 4.133
20 N -0.537 5.537
21 Si 0.702 3.298
22 H -0.201 1.201
23 H -0.212 1.212
24 H -0.194 1.194
25 C -0.092 4.092
26 C -0.004 4.004
27 C 0.013 3.987
28 N -0.260 5.260
29 H 0.071 0.929
30 H 0.091 0.909
31 H 0.091 0.909
32 H 0.066 0.934
33 H 0.081 0.919
34 H 0.099 0.901
35 H 0.151 0.849
36 H 0.153 0.847
37 H 0.089 0.911
38 H 0.092 0.908
39 H 0.231 0.769
40 H 0.090 0.910
41 H 0.108 0.892
42 H 0.043 0.957
43 H 0.121 0.879
44 H 0.006 0.994
45 H 0.043 0.957
46 H 0.074 0.926
47 H 0.045 0.955
48 H 0.098 0.902
49 H 0.088 0.912
50 H 0.095 0.905
51 H 0.174 0.826
Dipole moment (debyes) X Y Z Total
from point charges -10.398 25.035 18.581 32.865
hybrid contribution -2.426 -0.719 -0.821 2.660
sum -12.824 24.316 17.760 32.729
Atomic orbital electron populations
1.21734 0.78396 1.03191 1.01632 1.46228 1.05159 1.03182 1.78628
1.21582 0.97718 0.83814 1.01384 1.18394 0.88569 0.85866 0.90099
1.21436 1.01128 0.91682 1.12438 1.21296 0.93220 0.98057 0.91234
1.20578 0.94597 0.96135 1.11327 1.19742 0.97877 0.92509 0.82867
1.45408 1.58559 1.27625 1.09066 1.15832 0.79062 0.81030 0.83200
1.90894 1.57381 1.56625 1.42518 1.47421 1.60968 1.24315 1.03606
1.21829 0.95054 0.83103 0.98922 1.22498 0.98716 0.96779 0.89887
1.61891 1.46377 1.08366 1.08401 1.20176 0.94000 0.93001 0.89153
1.21013 1.01234 1.14015 1.18685 0.89987 1.24899 0.96895 0.95072
0.96423 1.69886 1.35273 1.20221 1.28307 0.86869 0.85404 0.77585
0.79914 1.20149 1.21188 1.19383 1.22429 0.94362 0.94355 0.98009
1.21727 0.99235 0.92553 0.86910 1.22392 0.99566 0.86120 0.90616
1.67214 1.06143 1.31592 1.21047 0.92866 0.90923 0.90939 0.93384
0.91895 0.90116 0.84889 0.84734 0.91110 0.90783 0.76881 0.90954
0.89171 0.95696 0.87918 0.99393 0.95705 0.92614 0.95503 0.90177
0.91239 0.90507 0.82566
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.09 0.39 10.28 59.85 0.62 1.00 16
2 N -0.62 -4.44 3.39 -189.66 -0.64 -5.08 16
3 C 0.10 0.58 10.50 59.85 0.63 1.21 16
4 C 0.40 3.66 7.37 -155.03 -1.14 2.52 16
5 C -0.24 -1.89 9.27 -39.23 -0.36 -2.25 16
6 C -0.01 -0.09 9.85 -39.32 -0.39 -0.48 16
7 C -0.22 -1.88 5.27 -104.46 -0.55 -2.43 16
8 C 0.19 1.90 5.83 -5.19 -0.03 1.87 16
9 N -0.75 -8.44 5.46 -66.41 -0.36 -8.80 16
10 C 0.71 10.75 8.31 -86.92 -0.72 10.03 16
11 O -0.60 -11.09 15.83 5.29 0.08 -11.01 16
12 N -0.63 -9.43 3.00 -177.91 -0.53 -9.97 16
13 C 0.13 2.21 6.61 -3.36 -0.02 2.19 16
14 C 0.05 0.95 5.47 -3.46 -0.02 0.93 16
15 N -0.53 -10.51 4.62 -235.47 -1.09 -11.60 16
16 C 0.16 3.83 3.79 -4.97 -0.02 3.81 16
17 C -0.51 -14.15 8.96 -34.44 -0.31 -14.46 16
18 H 0.08 2.46 7.37 -52.49 -0.39 2.07 16
19 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16
20 N -0.90 -27.10 13.96 55.43 0.77 -26.33 16
21 Si 0.87 21.14 27.47 -169.99 -4.67 16.47 16
22 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16
23 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16
24 H -0.27 -6.28 6.54 56.52 0.37 -5.91 16
25 C 0.04 0.60 5.62 -3.70 -0.02 0.58 16
26 C 0.12 1.55 6.59 -3.60 -0.02 1.53 16
27 C 0.17 1.51 10.85 -17.57 -0.19 1.32 16
28 N -0.54 -5.40 9.08 -12.44 -0.11 -5.51 16
29 H 0.05 0.19 8.14 -51.93 -0.42 -0.23 16
30 H 0.07 0.20 8.07 -51.93 -0.42 -0.22 16
31 H 0.07 0.26 5.98 -51.93 -0.31 -0.05 16
32 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16
33 H 0.06 0.25 8.07 -51.92 -0.42 -0.17 16
34 H 0.08 0.58 7.30 -51.93 -0.38 0.20 16
35 H 0.13 0.77 6.03 -52.48 -0.32 0.45 16
36 H 0.13 0.88 8.06 -52.49 -0.42 0.46 16
37 H 0.07 0.73 8.09 -51.93 -0.42 0.31 16
38 H 0.07 0.74 8.09 -51.93 -0.42 0.32 16
39 H 0.39 3.83 5.96 -40.82 -0.24 3.58 16
40 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16
41 H 0.09 1.51 7.09 -51.93 -0.37 1.14 16
42 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16
43 H 0.10 2.15 6.67 -51.93 -0.35 1.80 16
44 H -0.01 -0.28 7.18 -51.93 -0.37 -0.65 16
45 H 0.02 0.58 7.40 -51.93 -0.38 0.20 16
46 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16
47 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16
48 H 0.08 1.17 7.99 -51.93 -0.41 0.76 16
49 H 0.07 0.69 5.63 -51.93 -0.29 0.40 16
50 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16
51 H 0.16 1.14 8.06 -52.49 -0.42 0.71 16
LS Contribution 403.80 15.07 6.09 6.09
Total: -1.00 -34.40 403.80 -11.16 -45.56
By element:
Atomic # 1 Polarization: 8.98 SS G_CDS: -8.04 Total: 0.94 kcal
Atomic # 6 Polarization: 11.89 SS G_CDS: -2.65 Total: 9.24 kcal
Atomic # 7 Polarization: -65.32 SS G_CDS: -1.97 Total: -67.29 kcal
Atomic # 8 Polarization: -11.09 SS G_CDS: 0.08 Total: -11.01 kcal
Atomic # 14 Polarization: 21.14 SS G_CDS: -4.67 Total: 16.47 kcal
Total LS contribution 6.09 Total: 6.09 kcal
Total: -34.40 -11.16 -45.56 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000601554319.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 94.324 kcal
(2) G-P(sol) polarization free energy of solvation -34.399 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.925 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.164 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.563 kcal
(6) G-S(sol) free energy of system = (1) + (5) 48.761 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.80 seconds