Wall clock time and date at job start Wed Apr 1 2020 06:15:13
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46501 * 1
3 3 C 1.46498 * 119.99808 * 2 1
4 4 C 1.38996 * 120.00297 * 179.97438 * 2 1 3
5 5 C 1.39137 * 119.70903 * 5.00006 * 4 2 1
6 6 C 1.38298 * 119.10148 * 180.02562 * 5 4 2
7 7 C 1.38878 * 118.50681 * 359.97438 * 6 5 4
8 8 C 1.50693 * 120.33658 * 179.97438 * 7 6 5
9 9 N 1.46509 * 109.47258 * 90.00192 * 8 7 6
10 10 C 1.34774 * 119.99807 * 179.72359 * 9 8 7
11 11 O 1.21584 * 120.00140 * 355.18628 * 10 9 8
12 12 N 1.34777 * 119.99513 * 175.18991 * 10 9 8
13 13 C 1.47082 * 120.87935 * 184.71787 * 12 10 9
14 14 C 1.53693 * 108.27774 * 128.74970 * 13 12 10
15 15 N 1.46902 * 109.25351 * 54.08172 * 14 13 12
16 16 C 1.46907 * 110.99965 * 172.60497 * 15 14 13
17 17 C 1.50703 * 109.47048 * 294.30394 * 16 15 14
18 18 H 1.07997 * 120.00040 * 359.97438 * 17 16 15
19 19 C 1.37880 * 119.99730 * 179.97438 * 17 16 15
20 20 N 1.31513 * 120.00006 * 179.97438 * 19 17 16
21 21 Si 1.86801 * 120.00021 * 0.02562 * 19 17 16
22 22 H 1.48501 * 109.47119 * 89.99911 * 21 19 17
23 23 H 1.48504 * 109.46923 * 209.99710 * 21 19 17
24 24 H 1.48497 * 109.47203 * 329.99500 * 21 19 17
25 25 C 1.46893 * 111.27197 * 296.75343 * 15 14 13
26 26 C 1.47073 * 120.88291 * 4.99131 * 12 10 9
27 27 C 1.38030 * 119.32587 * 0.25289 * 7 6 5
28 28 N 1.31969 * 120.85685 * 359.45578 * 27 7 6
29 29 H 1.08997 * 109.46893 * 269.99771 * 1 2 3
30 30 H 1.09002 * 109.46862 * 30.00386 * 1 2 3
31 31 H 1.09003 * 109.46729 * 150.00183 * 1 2 3
32 32 H 1.08999 * 109.47796 * 269.99843 * 3 2 1
33 33 H 1.09008 * 109.47357 * 30.00232 * 3 2 1
34 34 H 1.09005 * 109.47624 * 149.99456 * 3 2 1
35 35 H 1.08007 * 120.44703 * 0.02562 * 5 4 2
36 36 H 1.08001 * 120.74590 * 180.02562 * 6 5 4
37 37 H 1.08993 * 109.47117 * 330.00010 * 8 7 6
38 38 H 1.09004 * 109.46911 * 209.99718 * 8 7 6
39 39 H 0.96996 * 119.99495 * 0.02562 * 9 8 7
40 40 H 1.08998 * 109.62540 * 248.52006 * 13 12 10
41 41 H 1.09000 * 109.62874 * 9.10361 * 13 12 10
42 42 H 1.09000 * 109.65181 * 294.08080 * 14 13 12
43 43 H 1.09001 * 109.42356 * 173.94297 * 14 13 12
44 44 H 1.08998 * 109.46929 * 54.30492 * 16 15 14
45 45 H 1.08995 * 109.47360 * 174.30423 * 16 15 14
46 46 H 0.96998 * 120.00504 * 180.02562 * 20 19 17
47 47 H 1.08995 * 109.49798 * 303.14495 * 25 15 14
48 48 H 1.08998 * 109.49542 * 183.06044 * 25 15 14
49 49 H 1.08998 * 109.63441 * 350.90223 * 26 12 10
50 50 H 1.08997 * 109.63028 * 111.48100 * 26 12 10
51 51 H 1.08002 * 119.56719 * 179.74626 * 27 7 6
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.1975 1.2687 0.0000
4 6 2.1600 -1.2037 0.0005
5 6 1.4623 -2.4029 -0.1043
6 6 2.1664 -3.5932 -0.1019
7 6 3.5502 -3.5445 0.0050
8 6 4.3583 -4.8165 0.0123
9 7 4.7245 -5.1703 -1.3614
10 6 5.4583 -6.2753 -1.5998
11 8 5.8904 -6.9302 -0.6710
12 7 5.7132 -6.6543 -2.8678
13 6 6.4231 -7.9108 -3.1519
14 6 5.5996 -8.7089 -4.1751
15 7 5.3366 -7.8656 -5.3489
16 6 4.7045 -8.6420 -6.4240
17 6 5.6724 -9.6808 -6.9292
18 1 6.6585 -9.7564 -6.4954
19 6 5.2988 -10.5347 -7.9453
20 7 6.1436 -11.4409 -8.3866
21 14 3.5934 -10.4034 -8.6961
22 1 3.6276 -9.4569 -9.8399
23 1 3.1583 -11.7407 -9.1731
24 1 2.6386 -9.9083 -7.6722
25 6 4.5203 -6.6972 -4.9935
26 6 5.2942 -5.8196 -4.0039
27 6 4.1774 -2.3195 0.1104
28 7 3.4803 -1.1990 0.0998
29 1 -0.3633 0.0000 1.0276
30 1 -0.3633 0.8900 -0.5139
31 1 -0.3633 -0.8900 -0.5138
32 1 2.3792 1.5835 -1.0276
33 1 1.6084 2.0284 0.5139
34 1 3.1499 1.1385 0.5139
35 1 0.3854 -2.4041 -0.1863
36 1 1.6518 -4.5393 -0.1823
37 1 3.7661 -5.6206 0.4491
38 1 5.2626 -4.6690 0.6029
39 1 4.4425 -4.6069 -2.0989
40 1 7.4083 -7.6899 -3.5625
41 1 6.5272 -8.4883 -2.2334
42 1 4.6539 -9.0136 -3.7270
43 1 6.1594 -9.5929 -4.4806
44 1 3.8111 -9.1341 -6.0397
45 1 4.4290 -7.9746 -7.2405
46 1 5.8810 -12.0414 -9.1017
47 1 3.5897 -7.0298 -4.5339
48 1 4.2975 -6.1222 -5.8922
49 1 4.6517 -5.0138 -3.6490
50 1 6.1730 -5.4016 -4.4949
51 1 5.2531 -2.2773 0.1979
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000601554319.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 06:15:13
Heat of formation + Delta-G solvation = 25.001040 kcal
Electronic energy + Delta-G solvation = -30007.856903 eV
Core-core repulsion = 25942.387000 eV
Total energy + Delta-G solvation = -4065.469902 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.206 amu
Computer time = 1.00 seconds
Orbital eigenvalues (eV)
-41.60305 -41.14148 -39.17199 -37.75646 -35.97829 -35.87569 -34.40001 -33.43217
-32.28723 -31.62035 -30.38294 -29.09713 -27.93896 -26.96546 -25.15705 -24.50104
-24.04245 -23.50550 -22.17856 -21.93741 -20.56474 -19.32508 -18.87923 -18.38665
-17.74857 -17.42170 -16.69071 -16.56170 -16.25870 -16.16068 -16.03301 -15.76759
-15.45348 -15.37592 -15.23920 -15.07103 -14.86389 -14.51545 -14.40565 -14.21888
-13.96048 -13.73978 -13.48402 -13.42011 -13.19976 -13.02136 -12.92073 -12.83543
-12.50662 -12.43268 -12.31005 -12.20491 -11.94260 -11.85333 -11.46554 -11.28406
-10.90487 -10.76440 -10.68360 -10.40447 -10.20706 -9.57820 -9.03293 -8.50612
-8.26536 -6.30103 0.24623 0.41353 1.35900 1.37631 1.47624 1.68225
2.01570 2.12441 2.35453 2.79760 3.05519 3.09144 3.16997 3.55407
3.78377 3.95160 3.99853 4.04766 4.05719 4.13650 4.14796 4.25754
4.37611 4.42480 4.46191 4.50902 4.55125 4.59590 4.71285 4.76250
4.80265 4.83694 4.86717 4.88182 4.92008 4.96116 4.99253 5.02674
5.07531 5.12817 5.37736 5.44201 5.47135 5.53589 5.62023 5.87174
5.99621 6.03362 6.29435 6.35595 6.63127 6.76584 6.95077 7.16512
7.33346 7.52958 8.89787
Molecular weight = 347.21amu
Principal moments of inertia in cm(-1)
A = 0.015488 B = 0.001973 C = 0.001821
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1807.459032 B =14186.485985 C =15369.337106
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.088 3.912
2 N -0.623 5.623
3 C 0.097 3.903
4 C 0.389 3.611
5 C -0.244 4.244
6 C -0.013 4.013
7 C -0.221 4.221
8 C 0.199 3.801
9 N -0.730 5.730
10 C 0.705 3.295
11 O -0.633 6.633
12 N -0.629 5.629
13 C 0.146 3.854
14 C 0.059 3.941
15 N -0.539 5.539
16 C 0.172 3.828
17 C -0.516 4.516
18 H 0.040 0.960
19 C 0.007 3.993
20 N -0.947 5.947
21 Si 0.948 3.052
22 H -0.263 1.263
23 H -0.285 1.285
24 H -0.252 1.252
25 C 0.036 3.964
26 C 0.125 3.875
27 C 0.166 3.834
28 N -0.566 5.566
29 H 0.060 0.940
30 H 0.088 0.912
31 H 0.079 0.921
32 H 0.047 0.953
33 H 0.084 0.916
34 H 0.064 0.936
35 H 0.153 0.847
36 H 0.149 0.851
37 H 0.067 0.933
38 H 0.070 0.930
39 H 0.405 0.595
40 H 0.072 0.928
41 H 0.085 0.915
42 H 0.020 0.980
43 H 0.071 0.929
44 H -0.016 1.016
45 H 0.036 0.964
46 H 0.266 0.734
47 H 0.029 0.971
48 H 0.098 0.902
49 H 0.108 0.892
50 H 0.083 0.917
51 H 0.165 0.835
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -14.371 27.167 18.279 35.758
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.054 4.054
2 N -0.336 5.336
3 C -0.046 4.046
4 C 0.154 3.846
5 C -0.268 4.268
6 C -0.039 4.039
7 C -0.227 4.227
8 C 0.075 3.925
9 N -0.388 5.388
10 C 0.407 3.593
11 O -0.515 6.515
12 N -0.365 5.365
13 C 0.022 3.978
14 C -0.071 4.071
15 N -0.264 5.264
16 C 0.045 3.955
17 C -0.555 4.555
18 H 0.059 0.941
19 C -0.190 4.190
20 N -0.588 5.588
21 Si 0.771 3.229
22 H -0.187 1.187
23 H -0.211 1.211
24 H -0.176 1.176
25 C -0.093 4.093
26 C 0.002 3.998
27 C 0.007 3.993
28 N -0.283 5.283
29 H 0.078 0.922
30 H 0.107 0.893
31 H 0.097 0.903
32 H 0.066 0.934
33 H 0.102 0.898
34 H 0.083 0.917
35 H 0.171 0.829
36 H 0.166 0.834
37 H 0.085 0.915
38 H 0.089 0.911
39 H 0.243 0.757
40 H 0.090 0.910
41 H 0.104 0.896
42 H 0.038 0.962
43 H 0.089 0.911
44 H 0.002 0.998
45 H 0.054 0.946
46 H 0.075 0.925
47 H 0.047 0.953
48 H 0.116 0.884
49 H 0.126 0.874
50 H 0.101 0.899
51 H 0.182 0.818
Dipole moment (debyes) X Y Z Total
from point charges -13.323 27.749 18.734 36.034
hybrid contribution -1.488 -1.463 -0.787 2.231
sum -14.811 26.286 17.947 35.105
Atomic orbital electron populations
1.21929 0.76692 1.04339 1.02432 1.46532 1.06334 1.02895 1.77878
1.21611 0.97476 0.84050 1.01429 1.18753 0.88608 0.87040 0.90154
1.21652 1.02153 0.91122 1.11865 1.21491 0.92981 0.98791 0.90618
1.20381 0.94777 0.95179 1.12351 1.19735 0.97886 0.93027 0.81820
1.45310 1.57068 1.26274 1.10172 1.15961 0.79156 0.81592 0.82593
1.90871 1.58915 1.58069 1.43621 1.47402 1.60860 1.23905 1.04375
1.21534 0.94696 0.83814 0.97762 1.22334 0.98303 0.96268 0.90154
1.61791 1.47396 1.09070 1.08099 1.19940 0.92598 0.92396 0.90528
1.21263 1.00493 1.15301 1.18411 0.94146 1.25852 1.01543 0.94582
0.97069 1.70050 1.37855 1.21539 1.29355 0.85709 0.79871 0.77837
0.79447 1.18737 1.21094 1.17631 1.22585 0.94157 0.92906 0.99619
1.21844 0.99900 0.92398 0.85657 1.22561 1.00091 0.86120 0.90491
1.67236 1.06941 1.32087 1.22081 0.92172 0.89346 0.90275 0.93419
0.89760 0.91708 0.82901 0.83365 0.91453 0.91143 0.75653 0.90963
0.89650 0.96204 0.91076 0.99786 0.94598 0.92490 0.95294 0.88389
0.87437 0.89885 0.81767
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.09 0.50 10.28 127.77 1.31 1.81 16
2 N -0.62 -7.73 3.39 -753.96 -2.56 -10.28 16
3 C 0.10 1.02 10.50 127.77 1.34 2.36 16
4 C 0.39 6.36 7.37 133.07 0.98 7.34 16
5 C -0.24 -3.21 9.27 22.50 0.21 -3.00 16
6 C -0.01 -0.17 9.85 22.44 0.22 0.05 16
7 C -0.22 -3.35 5.27 -19.76 -0.10 -3.46 16
8 C 0.20 3.58 5.83 85.63 0.50 4.08 16
9 N -0.73 -14.83 5.46 -482.30 -2.63 -17.47 16
10 C 0.71 20.41 8.31 179.05 1.49 21.90 16
11 O -0.63 -23.30 15.83 -3.98 -0.06 -23.36 16
12 N -0.63 -17.98 3.00 -835.06 -2.51 -20.48 16
13 C 0.15 4.84 6.61 86.50 0.57 5.41 16
14 C 0.06 2.26 5.47 86.54 0.47 2.74 16
15 N -0.54 -21.18 4.62 -898.88 -4.15 -25.33 16
16 C 0.17 7.97 3.79 85.56 0.32 8.30 16
17 C -0.52 -29.29 8.96 25.60 0.23 -29.06 16
18 H 0.04 2.56 7.37 -2.91 -0.02 2.54 16
19 C 0.01 0.39 5.47 84.66 0.46 0.86 16
20 N -0.95 -58.80 13.96 21.45 0.30 -58.50 16
21 Si 0.95 43.26 27.47 68.60 1.88 45.15 16
22 H -0.26 -11.38 7.11 99.48 0.71 -10.68 16
23 H -0.29 -12.89 7.11 99.48 0.71 -12.19 16
24 H -0.25 -10.76 6.54 99.48 0.65 -10.11 16
25 C 0.04 1.04 5.62 86.39 0.49 1.53 16
26 C 0.12 2.86 6.59 86.35 0.57 3.43 16
27 C 0.17 2.71 10.85 84.62 0.92 3.62 16
28 N -0.57 -10.59 9.08 -193.26 -1.75 -12.34 16
29 H 0.06 0.27 8.14 -2.39 -0.02 0.25 16
30 H 0.09 0.22 8.07 -2.39 -0.02 0.20 16
31 H 0.08 0.34 5.98 -2.39 -0.01 0.32 16
32 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16
33 H 0.08 0.49 8.07 -2.38 -0.02 0.47 16
34 H 0.06 0.89 7.30 -2.38 -0.02 0.87 16
35 H 0.15 1.30 6.03 -2.91 -0.02 1.28 16
36 H 0.15 1.53 8.06 -2.91 -0.02 1.51 16
37 H 0.07 1.29 8.09 -2.39 -0.02 1.27 16
38 H 0.07 1.34 8.09 -2.38 -0.02 1.33 16
39 H 0.41 6.52 5.96 -92.71 -0.55 5.96 16
40 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16
41 H 0.09 2.93 7.09 -2.39 -0.02 2.91 16
42 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16
43 H 0.07 3.17 6.67 -2.39 -0.02 3.15 16
44 H -0.02 -0.73 7.18 -2.39 -0.02 -0.75 16
45 H 0.04 1.59 7.40 -2.39 -0.02 1.57 16
46 H 0.27 15.42 8.31 -92.71 -0.77 14.65 16
47 H 0.03 0.84 8.14 -2.39 -0.02 0.82 16
48 H 0.10 2.50 7.99 -2.39 -0.02 2.49 16
49 H 0.11 1.67 5.63 -2.39 -0.01 1.66 16
50 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16
51 H 0.17 2.22 8.06 -2.91 -0.02 2.20 16
Total: -1.00 -76.33 403.80 -1.17 -77.50
By element:
Atomic # 1 Polarization: 16.88 SS G_CDS: 0.33 Total: 17.21 kcal
Atomic # 6 Polarization: 17.93 SS G_CDS: 9.98 Total: 27.91 kcal
Atomic # 7 Polarization: -131.10 SS G_CDS: -13.31 Total: -144.41 kcal
Atomic # 8 Polarization: -23.30 SS G_CDS: -0.06 Total: -23.36 kcal
Atomic # 14 Polarization: 43.26 SS G_CDS: 1.88 Total: 45.15 kcal
Total: -76.33 -1.17 -77.50 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000601554319.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 102.503 kcal
(2) G-P(sol) polarization free energy of solvation -76.330 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.173 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.172 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.502 kcal
(6) G-S(sol) free energy of system = (1) + (5) 25.001 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.00 seconds