Wall clock time and date at job start Wed Apr 1 2020 06:15:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46498 * 120.00001 * 2 1 4 4 C 1.39001 * 120.00121 * 180.02562 * 2 1 3 5 5 C 1.39141 * 119.70423 * 5.01579 * 4 2 1 6 6 C 1.38297 * 119.09655 * 179.97438 * 5 4 2 7 7 C 1.38881 * 118.50471 * 359.75935 * 6 5 4 8 8 C 1.38019 * 119.33211 * 0.48407 * 7 6 5 9 9 C 1.50698 * 119.57622 * 179.77358 * 8 7 6 10 10 N 1.46497 * 109.46797 * 94.72683 * 9 8 7 11 11 C 1.34784 * 119.99674 * 179.97438 * 10 9 8 12 12 O 1.21586 * 120.00368 * 354.92374 * 11 10 9 13 13 N 1.34780 * 119.99493 * 174.92041 * 11 10 9 14 14 C 1.47084 * 120.87506 * 184.71811 * 13 11 10 15 15 C 1.53698 * 108.27143 * 128.75693 * 14 13 11 16 16 N 1.46894 * 109.26005 * 54.08313 * 15 14 13 17 17 C 1.46897 * 111.00310 * 172.60486 * 16 15 14 18 18 C 1.50697 * 109.47209 * 294.29923 * 17 16 15 19 19 H 1.08004 * 119.99840 * 0.02562 * 18 17 16 20 20 C 1.37879 * 120.00299 * 179.97438 * 18 17 16 21 21 N 1.31520 * 119.99794 * 0.02562 * 20 18 17 22 22 Si 1.86795 * 120.00058 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47356 * 0.02562 * 22 20 18 24 24 H 1.48502 * 109.47091 * 120.00432 * 22 20 18 25 25 H 1.48501 * 109.47207 * 240.00045 * 22 20 18 26 26 C 1.46902 * 111.26845 * 296.75507 * 16 15 14 27 27 C 1.47074 * 120.88601 * 4.99663 * 13 11 10 28 28 N 1.31976 * 120.85286 * 359.50276 * 8 7 6 29 29 H 1.08998 * 109.46498 * 270.00045 * 1 2 3 30 30 H 1.08997 * 109.47019 * 29.99966 * 1 2 3 31 31 H 1.09002 * 109.47102 * 149.99756 * 1 2 3 32 32 H 1.09002 * 109.47231 * 180.02562 * 3 2 1 33 33 H 1.09003 * 109.47256 * 299.99827 * 3 2 1 34 34 H 1.08991 * 109.47143 * 60.00047 * 3 2 1 35 35 H 1.07998 * 120.45404 * 359.96455 * 5 4 2 36 36 H 1.08001 * 120.74901 * 179.97438 * 6 5 4 37 37 H 1.08007 * 120.33459 * 180.26226 * 7 6 5 38 38 H 1.08999 * 109.47549 * 214.73208 * 9 8 7 39 39 H 1.08997 * 109.47142 * 334.73017 * 9 8 7 40 40 H 0.96998 * 120.00436 * 0.02562 * 10 9 8 41 41 H 1.09001 * 109.62579 * 248.52062 * 14 13 11 42 42 H 1.08997 * 109.62855 * 9.10940 * 14 13 11 43 43 H 1.08995 * 109.65202 * 294.07588 * 15 14 13 44 44 H 1.09007 * 109.41662 * 173.94500 * 15 14 13 45 45 H 1.09004 * 109.47024 * 54.29876 * 17 16 15 46 46 H 1.09002 * 109.47020 * 174.29960 * 17 16 15 47 47 H 0.96998 * 119.99877 * 179.97438 * 21 20 18 48 48 H 1.09000 * 109.48977 * 303.14501 * 26 16 15 49 49 H 1.09000 * 109.49603 * 183.06656 * 26 16 15 50 50 H 1.09005 * 109.62912 * 350.90075 * 27 13 11 51 51 H 1.09002 * 109.62618 * 111.47347 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1601 -1.2038 -0.0005 5 6 1.4622 -2.4028 -0.1067 6 6 2.1663 -3.5931 -0.1065 7 6 3.5506 -3.5442 -0.0048 8 6 4.1778 -2.3195 0.1025 9 6 5.6792 -2.2604 0.2183 10 7 6.2639 -2.0603 -1.1100 11 6 7.6015 -1.9756 -1.2516 12 8 8.3180 -1.9723 -0.2692 13 7 8.1450 -1.8944 -2.4823 14 6 9.6044 -1.9049 -2.6651 15 6 9.9512 -2.9754 -3.7122 16 7 9.1745 -2.7275 -4.9341 17 6 9.6022 -3.6197 -6.0198 18 6 11.0187 -3.2888 -6.4134 19 1 11.5485 -2.4952 -5.9073 20 6 11.6389 -3.9996 -7.4190 21 7 10.9940 -4.9662 -8.0350 22 14 13.3950 -3.5898 -7.9063 23 1 13.8934 -2.4707 -7.0669 24 1 14.2563 -4.7823 -7.7028 25 1 13.4317 -3.1910 -9.3363 26 6 7.7326 -2.8561 -4.6842 27 6 7.2947 -1.7870 -3.6775 28 7 3.4802 -1.1992 0.0996 29 1 -0.3632 0.0000 1.0277 30 1 -0.3633 0.8900 -0.5138 31 1 -0.3633 -0.8900 -0.5139 32 1 3.2692 1.0696 -0.0005 33 1 1.9342 1.8403 -0.8900 34 1 1.9342 1.8402 0.8899 35 1 0.3853 -2.4040 -0.1881 36 1 1.6517 -4.5391 -0.1872 37 1 4.1301 -4.4557 -0.0060 38 1 5.9612 -1.4319 0.8680 39 1 6.0481 -3.1950 0.6406 40 1 5.6883 -1.9881 -1.8874 41 1 9.9368 -0.9269 -3.0130 42 1 10.0902 -2.1450 -1.7194 43 1 9.7082 -3.9632 -3.3208 44 1 11.0157 -2.9263 -3.9416 45 1 9.5516 -4.6545 -5.6810 46 1 8.9456 -3.4863 -6.8796 47 1 11.4302 -5.4661 -8.7427 48 1 7.5205 -3.8456 -4.2793 49 1 7.1880 -2.7207 -5.6186 50 1 6.2527 -1.9489 -3.4014 51 1 7.4095 -0.7978 -4.1207 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602284548.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:15:18 Heat of formation + Delta-G solvation = 47.052584 kcal Electronic energy + Delta-G solvation = -30213.227911 eV Core-core repulsion = 26148.714235 eV Total energy + Delta-G solvation = -4064.513676 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.80959 -40.05069 -37.70681 -37.04172 -34.81976 -34.34517 -32.78527 -32.36640 -31.21888 -30.47834 -28.83965 -28.21053 -26.59268 -25.58939 -25.24941 -23.19668 -22.42683 -22.07632 -21.59832 -20.68065 -19.32888 -18.14251 -17.52879 -16.89570 -16.44507 -16.16832 -16.00651 -15.65421 -15.43092 -14.98793 -14.73606 -14.56792 -14.38460 -14.29530 -13.91229 -13.72983 -13.57203 -13.44897 -13.33964 -13.15356 -12.94582 -12.53191 -12.44928 -12.26588 -12.16840 -12.00173 -11.96082 -11.27797 -11.11120 -10.82903 -10.71836 -10.58503 -10.49044 -10.46127 -10.13050 -9.88284 -9.79604 -9.70541 -9.24903 -9.11557 -8.47374 -8.28163 -7.92682 -7.30035 -6.05301 -4.06784 0.80945 1.14388 2.51821 2.78967 3.30500 3.35601 3.38147 3.43037 3.56598 3.93326 4.07068 4.40293 4.42512 4.52855 4.73190 4.77218 4.81442 4.92300 4.95052 5.08954 5.17340 5.23364 5.24564 5.25779 5.30024 5.37451 5.41175 5.47394 5.59223 5.61268 5.69697 5.72830 5.86843 5.96460 5.97702 6.07799 6.21336 6.22524 6.42895 6.46246 6.55080 6.59257 6.72448 6.96534 7.09489 7.23904 7.30002 7.76193 7.81562 8.02246 8.04957 8.14527 8.49369 8.72086 9.00988 9.57822 11.05588 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.019105 B = 0.001914 C = 0.001878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1465.223801 B =14625.550768 C =14909.567608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.095 3.905 2 N -0.618 5.618 3 C 0.093 3.907 4 C 0.402 3.598 5 C -0.236 4.236 6 C -0.033 4.033 7 C -0.213 4.213 8 C 0.159 3.841 9 C 0.193 3.807 10 N -0.743 5.743 11 C 0.710 3.290 12 O -0.596 6.596 13 N -0.624 5.624 14 C 0.134 3.866 15 C 0.051 3.949 16 N -0.535 5.535 17 C 0.193 3.807 18 C -0.508 4.508 19 H 0.065 0.935 20 C 0.055 3.945 21 N -0.898 5.898 22 Si 0.898 3.102 23 H -0.271 1.271 24 H -0.285 1.285 25 H -0.284 1.284 26 C 0.041 3.959 27 C 0.119 3.881 28 N -0.528 5.528 29 H 0.051 0.949 30 H 0.072 0.928 31 H 0.071 0.929 32 H 0.092 0.908 33 H 0.052 0.948 34 H 0.051 0.949 35 H 0.133 0.867 36 H 0.135 0.865 37 H 0.135 0.865 38 H 0.082 0.918 39 H 0.082 0.918 40 H 0.396 0.604 41 H 0.070 0.930 42 H 0.089 0.911 43 H 0.025 0.975 44 H 0.097 0.903 45 H -0.009 1.009 46 H 0.031 0.969 47 H 0.261 0.739 48 H 0.027 0.973 49 H 0.080 0.920 50 H 0.068 0.932 51 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.689 7.172 16.712 29.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.333 5.333 3 C -0.050 4.050 4 C 0.167 3.833 5 C -0.261 4.261 6 C -0.059 4.059 7 C -0.236 4.236 8 C 0.021 3.979 9 C 0.068 3.932 10 N -0.401 5.401 11 C 0.412 3.588 12 O -0.474 6.474 13 N -0.361 5.361 14 C 0.011 3.989 15 C -0.078 4.078 16 N -0.260 5.260 17 C 0.069 3.931 18 C -0.546 4.546 19 H 0.083 0.917 20 C -0.147 4.147 21 N -0.538 5.538 22 Si 0.726 3.274 23 H -0.196 1.196 24 H -0.211 1.211 25 H -0.210 1.210 26 C -0.089 4.089 27 C -0.004 4.004 28 N -0.245 5.245 29 H 0.070 0.930 30 H 0.090 0.910 31 H 0.089 0.911 32 H 0.111 0.889 33 H 0.070 0.930 34 H 0.070 0.930 35 H 0.151 0.849 36 H 0.153 0.847 37 H 0.153 0.847 38 H 0.101 0.899 39 H 0.100 0.900 40 H 0.232 0.768 41 H 0.088 0.912 42 H 0.107 0.893 43 H 0.043 0.957 44 H 0.115 0.885 45 H 0.009 0.991 46 H 0.049 0.951 47 H 0.070 0.930 48 H 0.045 0.955 49 H 0.098 0.902 50 H 0.086 0.914 51 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -22.704 8.482 17.219 29.731 hybrid contribution -0.227 -1.484 -0.709 1.660 sum -22.932 6.998 16.510 29.110 Atomic orbital electron populations 1.21693 0.78528 1.03058 1.01531 1.46183 1.05046 1.03110 1.78922 1.21644 0.99078 0.83948 1.00371 1.18270 0.88191 0.85987 0.90841 1.21472 1.01087 0.91912 1.11611 1.21340 0.93819 0.97924 0.92795 1.21733 0.95254 0.98810 1.07811 1.20819 0.95297 0.87884 0.93923 1.19881 0.85274 1.03103 0.84945 1.45117 1.05554 1.79903 1.09574 1.15754 0.81738 0.77748 0.83598 1.90890 1.60363 1.58923 1.37268 1.47389 1.07926 1.76756 1.04057 1.21837 0.77659 0.99950 0.99471 1.22458 1.00504 0.95279 0.89607 1.62069 1.00675 1.56308 1.06956 1.19729 0.96526 0.89073 0.87818 1.21190 0.97667 1.17475 1.18299 0.91679 1.25001 0.98338 0.95053 0.96276 1.69969 1.37237 1.22010 1.24580 0.86433 0.84366 0.78232 0.78345 1.19576 1.21131 1.21046 1.22376 0.92303 0.96072 0.98103 1.21750 0.92604 1.00542 0.85539 1.66886 1.06138 1.31434 1.20087 0.93000 0.90967 0.91071 0.88937 0.92952 0.93049 0.84950 0.84707 0.84731 0.89945 0.89960 0.76758 0.91162 0.89313 0.95712 0.88495 0.99119 0.95096 0.92967 0.95525 0.90201 0.91413 0.90665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.43 10.33 59.85 0.62 1.05 16 2 N -0.62 -4.89 3.39 -189.67 -0.64 -5.54 16 3 C 0.09 0.67 10.71 59.85 0.64 1.31 16 4 C 0.40 3.89 7.37 -155.03 -1.14 2.74 16 5 C -0.24 -1.86 9.27 -39.22 -0.36 -2.22 16 6 C -0.03 -0.25 10.17 -39.32 -0.40 -0.65 16 7 C -0.21 -1.86 9.71 -39.42 -0.38 -2.24 16 8 C 0.16 1.65 6.14 -82.61 -0.51 1.15 16 9 C 0.19 2.20 5.98 -5.20 -0.03 2.17 16 10 N -0.74 -9.41 5.46 -66.42 -0.36 -9.78 16 11 C 0.71 11.44 8.31 -86.91 -0.72 10.72 16 12 O -0.60 -11.49 15.83 5.29 0.08 -11.40 16 13 N -0.62 -9.90 3.00 -177.91 -0.53 -10.43 16 14 C 0.13 2.26 6.61 -3.36 -0.02 2.24 16 15 C 0.05 0.99 5.47 -3.46 -0.02 0.97 16 16 N -0.53 -11.16 4.62 -235.47 -1.09 -12.25 16 17 C 0.19 4.92 4.72 -4.98 -0.02 4.90 16 18 C -0.51 -13.97 8.41 -34.44 -0.29 -14.26 16 19 H 0.07 1.77 7.13 -52.48 -0.37 1.39 16 20 C 0.05 1.53 5.46 -17.82 -0.10 1.43 16 21 N -0.90 -26.41 13.29 55.43 0.74 -25.67 16 22 Si 0.90 21.44 29.54 -169.99 -5.02 16.42 16 23 H -0.27 -6.35 7.11 56.52 0.40 -5.94 16 24 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 25 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 26 C 0.04 0.70 5.62 -3.70 -0.02 0.68 16 27 C 0.12 1.67 6.59 -3.61 -0.02 1.65 16 28 N -0.53 -5.84 8.76 -8.67 -0.08 -5.92 16 29 H 0.05 0.21 8.14 -51.93 -0.42 -0.22 16 30 H 0.07 0.23 8.07 -51.93 -0.42 -0.18 16 31 H 0.07 0.26 5.98 -51.93 -0.31 -0.05 16 32 H 0.09 0.85 6.82 -51.93 -0.35 0.49 16 33 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 34 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 35 H 0.13 0.73 6.03 -52.49 -0.32 0.42 16 36 H 0.14 0.66 8.06 -52.49 -0.42 0.24 16 37 H 0.13 1.01 8.06 -52.48 -0.42 0.59 16 38 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 39 H 0.08 0.90 8.04 -51.93 -0.42 0.48 16 40 H 0.40 4.49 5.96 -40.82 -0.24 4.25 16 41 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 42 H 0.09 1.51 7.09 -51.93 -0.37 1.14 16 43 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 44 H 0.10 2.00 6.67 -51.93 -0.35 1.66 16 45 H -0.01 -0.25 8.12 -51.93 -0.42 -0.67 16 46 H 0.03 0.84 7.97 -51.93 -0.41 0.42 16 47 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 48 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 49 H 0.08 1.30 7.99 -51.93 -0.41 0.88 16 50 H 0.07 0.76 5.64 -51.93 -0.29 0.47 16 51 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 LS Contribution 407.14 15.07 6.14 6.14 Total: -1.00 -33.75 407.14 -11.61 -45.36 By element: Atomic # 1 Polarization: 9.48 SS G_CDS: -8.06 Total: 1.43 kcal Atomic # 6 Polarization: 14.42 SS G_CDS: -2.79 Total: 11.64 kcal Atomic # 7 Polarization: -67.61 SS G_CDS: -1.97 Total: -69.58 kcal Atomic # 8 Polarization: -11.49 SS G_CDS: 0.08 Total: -11.40 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -33.75 -11.61 -45.36 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602284548.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.416 kcal (2) G-P(sol) polarization free energy of solvation -33.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.363 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds