Wall clock time and date at job start Wed Apr 1 2020 05:24:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 N 1.40293 * 126.01184 * 2 1 4 4 C 1.30159 * 108.30619 * 179.97438 * 3 2 1 5 5 C 1.40378 * 108.31437 * 0.10074 * 4 3 2 6 6 C 1.35348 * 107.97138 * 359.87521 * 5 4 3 7 7 N 1.39505 * 126.28452 * 180.09225 * 6 5 4 8 8 C 1.34770 * 119.99869 * 237.17052 * 7 6 5 9 9 O 1.21590 * 120.00254 * 2.64983 * 8 7 6 10 10 N 1.34783 * 119.99867 * 182.65747 * 8 7 6 11 11 C 1.47074 * 120.87881 * 354.59881 * 10 8 7 12 12 C 1.53699 * 108.27551 * 128.75918 * 11 10 8 13 13 N 1.46892 * 109.25731 * 54.08155 * 12 11 10 14 14 C 1.46900 * 111.00065 * 172.60504 * 13 12 11 15 15 C 1.50701 * 109.47510 * 294.30502 * 14 13 12 16 16 H 1.07998 * 119.99852 * 359.97438 * 15 14 13 17 17 C 1.37868 * 120.00105 * 179.97438 * 15 14 13 18 18 N 1.31517 * 120.00294 * 359.97438 * 17 15 14 19 19 Si 1.86806 * 120.00043 * 179.97438 * 17 15 14 20 20 H 1.48496 * 109.46874 * 59.99959 * 19 17 15 21 21 H 1.48497 * 109.47047 * 179.97438 * 19 17 15 22 22 H 1.48496 * 109.46778 * 299.99786 * 19 17 15 23 23 C 1.46896 * 111.26907 * 296.75712 * 13 12 11 24 24 C 1.47075 * 120.88103 * 174.88115 * 10 8 7 25 25 C 1.50866 * 123.69326 * 179.62228 * 5 4 3 26 26 C 1.53329 * 108.22117 * 343.73949 * 25 5 4 27 27 C 1.53033 * 109.76556 * 50.34935 * 26 25 5 28 28 C 1.50969 * 128.22528 * 180.28702 * 4 3 2 29 29 H 1.08994 * 109.47476 * 85.66313 * 1 2 3 30 30 H 1.09005 * 109.46500 * 205.66510 * 1 2 3 31 31 H 1.08998 * 109.47061 * 325.66222 * 1 2 3 32 32 H 0.96994 * 119.99838 * 57.16609 * 7 6 5 33 33 H 1.09005 * 109.63271 * 248.52511 * 11 10 8 34 34 H 1.09001 * 109.63113 * 9.10601 * 11 10 8 35 35 H 1.09001 * 109.64880 * 294.07528 * 12 11 10 36 36 H 1.09005 * 109.44184 * 173.96452 * 12 11 10 37 37 H 1.09002 * 109.47024 * 54.30688 * 14 13 12 38 38 H 1.08998 * 109.47366 * 174.29780 * 14 13 12 39 39 H 0.96998 * 120.00570 * 179.97438 * 18 17 15 40 40 H 1.09003 * 109.49231 * 303.14352 * 23 13 12 41 41 H 1.09001 * 109.49196 * 183.06290 * 23 13 12 42 42 H 1.09000 * 109.63262 * 350.89539 * 24 10 8 43 43 H 1.09000 * 109.63114 * 111.47554 * 24 10 8 44 44 H 1.09002 * 109.71609 * 103.24422 * 25 5 4 45 45 H 1.08997 * 109.71620 * 223.90114 * 25 5 4 46 46 H 1.09006 * 109.36083 * 290.28818 * 26 25 5 47 47 H 1.09004 * 109.41394 * 170.44201 * 26 25 5 48 48 H 1.08998 * 109.42829 * 168.26393 * 27 26 25 49 49 H 1.09000 * 109.37677 * 48.39629 * 27 26 25 50 50 H 1.09001 * 109.71245 * 282.90353 * 28 4 3 51 51 H 1.08999 * 109.71731 * 43.50974 * 28 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2898 1.1348 0.0000 4 6 3.5297 0.7390 0.0006 5 6 3.5447 -0.6647 -0.0014 6 6 2.2617 -1.0960 -0.0004 7 7 1.8375 -2.4250 0.0001 8 6 1.0290 -2.8746 -0.9799 9 8 0.7083 -2.1354 -1.8905 10 7 0.5758 -4.1436 -0.9506 11 6 1.0435 -5.0886 0.0748 12 6 -0.1868 -5.7296 0.7365 13 7 -1.0453 -6.3151 -0.3016 14 6 -2.1413 -7.0892 0.2964 15 6 -1.5759 -8.2839 1.0204 16 1 -0.5091 -8.4516 1.0344 17 6 -2.4204 -9.1627 1.6647 18 7 -3.7195 -8.9582 1.6481 19 14 -1.7196 -10.6440 2.5615 20 1 -0.7966 -10.1845 3.6302 21 1 -2.8274 -11.4257 3.1671 22 1 -0.9776 -11.4989 1.6004 23 6 -1.5639 -5.2828 -1.2090 24 6 -0.3947 -4.6218 -1.9468 25 6 4.8087 -1.4883 -0.0097 26 6 5.9713 -0.5780 -0.4229 27 6 5.9580 0.6957 0.4253 28 6 4.7803 1.5847 0.0067 29 1 -0.3634 0.0777 -1.0246 30 1 -0.3632 -0.9263 0.4451 31 1 -0.3633 0.8486 0.5797 32 1 2.1244 -3.0254 0.7058 33 1 1.6564 -5.8605 -0.3908 34 1 1.6282 -4.5556 0.8245 35 1 -0.7450 -4.9708 1.2849 36 1 0.1370 -6.5109 1.4242 37 1 -2.6867 -6.4618 1.0014 38 1 -2.8182 -7.4267 -0.4884 39 1 -4.3137 -9.5766 2.1011 40 1 -2.1030 -4.5302 -0.6335 41 1 -2.2386 -5.7402 -1.9326 42 1 -0.7614 -3.7800 -2.5343 43 1 0.0825 -5.3496 -2.6030 44 1 4.9942 -1.8873 0.9875 45 1 4.7092 -2.3075 -0.7218 46 1 5.8670 -0.3139 -1.4754 47 1 6.9142 -1.1038 -0.2727 48 1 6.8918 1.2386 0.2789 49 1 5.8547 0.4288 1.4770 50 1 4.9584 1.9850 -0.9914 51 1 4.6667 2.4039 0.7166 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000603149496.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:24:28 Heat of formation + Delta-G solvation = 61.652829 kcal Electronic energy + Delta-G solvation = -31322.350965 eV Core-core repulsion = 27258.470403 eV Total energy + Delta-G solvation = -4063.880562 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.88545 -40.27229 -37.85863 -36.86311 -35.11447 -34.51847 -32.63700 -32.40766 -31.50768 -30.75755 -28.63449 -27.84856 -27.15622 -25.58501 -23.52006 -23.38301 -22.65398 -22.05426 -21.42602 -20.18597 -19.72864 -18.99396 -18.25067 -17.34079 -16.45192 -16.02226 -15.65172 -15.38340 -15.32819 -14.90437 -14.79672 -14.54277 -14.23982 -14.08909 -14.06696 -13.88797 -13.73112 -13.43813 -13.08752 -12.98319 -12.73277 -12.65978 -12.39855 -12.01169 -11.77667 -11.53027 -11.39756 -11.18202 -11.11702 -11.10597 -10.98974 -10.88343 -10.73218 -10.64445 -10.55317 -10.28427 -10.06809 -9.94769 -9.38186 -9.04960 -8.61872 -8.52390 -8.24041 -7.44209 -6.13025 -4.15747 1.63757 2.08655 2.52251 2.61642 3.05131 3.25734 3.31129 3.32837 3.63684 4.14865 4.31959 4.60036 4.65516 4.66970 4.81128 4.90094 5.07691 5.14573 5.17300 5.21066 5.23639 5.27307 5.29882 5.35031 5.37220 5.47053 5.50292 5.51349 5.59817 5.65759 5.69278 5.72190 5.80987 5.87177 5.91219 5.93918 6.08649 6.10702 6.16589 6.28698 6.32080 6.43025 6.56109 6.72383 7.00872 7.12330 7.18278 7.55566 7.65135 7.72166 7.91763 8.02603 8.34700 8.38156 8.90929 9.49165 10.97616 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.018090 B = 0.002293 C = 0.002167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1547.417035 B =12206.056050 C =12916.106990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.110 3.890 2 N -0.368 5.368 3 N -0.281 5.281 4 C 0.086 3.914 5 C -0.245 4.245 6 C 0.338 3.662 7 N -0.673 5.673 8 C 0.708 3.292 9 O -0.579 6.579 10 N -0.617 5.617 11 C 0.112 3.888 12 C 0.051 3.949 13 N -0.534 5.534 14 C 0.194 3.806 15 C -0.512 4.512 16 H 0.063 0.937 17 C 0.056 3.944 18 N -0.897 5.897 19 Si 0.899 3.101 20 H -0.277 1.277 21 H -0.288 1.288 22 H -0.275 1.275 23 C 0.040 3.960 24 C 0.136 3.864 25 C -0.035 4.035 26 C -0.116 4.116 27 C -0.115 4.115 28 C -0.036 4.036 29 H 0.080 0.920 30 H 0.078 0.922 31 H 0.084 0.916 32 H 0.415 0.585 33 H 0.082 0.918 34 H 0.069 0.931 35 H 0.025 0.975 36 H 0.099 0.901 37 H -0.009 1.009 38 H 0.033 0.967 39 H 0.263 0.737 40 H 0.026 0.974 41 H 0.084 0.916 42 H 0.089 0.911 43 H 0.074 0.926 44 H 0.066 0.934 45 H 0.066 0.934 46 H 0.064 0.936 47 H 0.066 0.934 48 H 0.070 0.930 49 H 0.066 0.934 50 H 0.083 0.917 51 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.509 17.249 -1.872 23.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.031 4.031 2 N -0.153 5.153 3 N -0.104 5.104 4 C -0.081 4.081 5 C -0.259 4.259 6 C 0.118 3.882 7 N -0.331 5.331 8 C 0.410 3.590 9 O -0.455 6.455 10 N -0.354 5.354 11 C -0.011 4.011 12 C -0.078 4.078 13 N -0.260 5.260 14 C 0.070 3.930 15 C -0.551 4.551 16 H 0.082 0.918 17 C -0.145 4.145 18 N -0.536 5.536 19 Si 0.727 3.273 20 H -0.203 1.203 21 H -0.213 1.213 22 H -0.201 1.201 23 C -0.089 4.089 24 C 0.013 3.987 25 C -0.073 4.073 26 C -0.154 4.154 27 C -0.153 4.153 28 C -0.075 4.075 29 H 0.099 0.901 30 H 0.097 0.903 31 H 0.103 0.897 32 H 0.256 0.744 33 H 0.100 0.900 34 H 0.087 0.913 35 H 0.043 0.957 36 H 0.117 0.883 37 H 0.009 0.991 38 H 0.051 0.949 39 H 0.073 0.927 40 H 0.044 0.956 41 H 0.102 0.898 42 H 0.107 0.893 43 H 0.093 0.907 44 H 0.084 0.916 45 H 0.085 0.915 46 H 0.083 0.917 47 H 0.085 0.915 48 H 0.089 0.911 49 H 0.085 0.915 50 H 0.101 0.899 51 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 15.347 18.306 -2.763 24.047 hybrid contribution -0.012 -1.473 1.404 2.035 sum 15.334 16.832 -1.359 22.810 Atomic orbital electron populations 1.21770 0.74107 1.03354 1.03895 1.48673 1.06537 1.02607 1.57448 1.77095 1.01139 1.06373 1.25767 1.22032 0.93357 0.93188 0.99557 1.19551 0.92838 0.94161 1.19325 1.16840 0.88976 0.80004 1.02354 1.42107 1.53788 1.07781 1.29423 1.15831 0.78843 0.82471 0.81889 1.90946 1.62562 1.56299 1.35724 1.47416 1.46101 1.08703 1.33171 1.22059 0.97491 0.91889 0.89654 1.22405 0.93184 0.98069 0.94183 1.62072 1.23215 1.21684 1.18982 1.19727 0.87650 0.91905 0.93766 1.21077 0.93690 1.08136 1.32163 0.91845 1.24996 0.94795 0.98191 0.96552 1.69941 1.02383 1.37556 1.43718 0.86546 0.78453 0.82497 0.79829 1.20265 1.21343 1.20091 1.22446 0.95407 0.93965 0.97121 1.21718 0.88555 0.98617 0.89767 1.19904 0.90060 0.96289 1.01081 1.21533 0.97837 0.95883 1.00142 1.21551 0.97252 0.96076 1.00381 1.20114 0.88456 0.96272 1.02705 0.90122 0.90332 0.89694 0.74407 0.89982 0.91312 0.95692 0.88297 0.99116 0.94938 0.92744 0.95555 0.89783 0.89272 0.90737 0.91552 0.91503 0.91724 0.91512 0.91128 0.91480 0.89914 0.90069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.34 10.04 59.84 0.60 1.94 16 2 N -0.37 -5.19 3.99 -67.31 -0.27 -5.46 16 3 N -0.28 -4.01 12.55 33.74 0.42 -3.59 16 4 C 0.09 1.05 7.10 -82.36 -0.58 0.46 16 5 C -0.24 -2.96 5.91 -104.77 -0.62 -3.58 16 6 C 0.34 4.54 6.64 -153.18 -1.02 3.52 16 7 N -0.67 -8.20 5.18 -15.96 -0.08 -8.29 16 8 C 0.71 10.34 7.55 -86.92 -0.66 9.68 16 9 O -0.58 -10.25 14.45 5.29 0.08 -10.18 16 10 N -0.62 -8.62 3.00 -177.91 -0.53 -9.16 16 11 C 0.11 1.43 6.63 -3.37 -0.02 1.40 16 12 C 0.05 0.85 5.47 -3.47 -0.02 0.83 16 13 N -0.53 -10.39 4.62 -235.47 -1.09 -11.47 16 14 C 0.19 4.73 4.72 -4.98 -0.02 4.70 16 15 C -0.51 -13.44 8.41 -34.44 -0.29 -13.73 16 16 H 0.06 1.62 7.13 -52.49 -0.37 1.24 16 17 C 0.06 1.53 5.46 -17.82 -0.10 1.43 16 18 N -0.90 -25.66 13.29 55.43 0.74 -24.92 16 19 Si 0.90 20.63 29.54 -169.99 -5.02 15.61 16 20 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 21 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 22 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 23 C 0.04 0.67 5.62 -3.70 -0.02 0.65 16 24 C 0.14 1.98 6.58 -3.60 -0.02 1.95 16 25 C -0.04 -0.32 6.27 -27.63 -0.17 -0.49 16 26 C -0.12 -0.86 5.86 -26.54 -0.16 -1.01 16 27 C -0.11 -0.76 5.86 -26.52 -0.16 -0.92 16 28 C -0.04 -0.30 6.31 -27.56 -0.17 -0.48 16 29 H 0.08 1.04 7.89 -51.93 -0.41 0.63 16 30 H 0.08 0.93 7.66 -51.93 -0.40 0.54 16 31 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.41 4.02 6.31 -40.82 -0.26 3.77 16 33 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 34 H 0.07 0.66 5.62 -51.93 -0.29 0.37 16 35 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.10 1.76 6.67 -51.93 -0.35 1.41 16 37 H -0.01 -0.24 8.12 -51.93 -0.42 -0.66 16 38 H 0.03 0.85 7.97 -51.93 -0.41 0.44 16 39 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 40 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.08 1.37 7.99 -51.93 -0.41 0.95 16 42 H 0.09 1.29 7.10 -51.93 -0.37 0.92 16 43 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 44 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 45 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 46 H 0.06 0.52 8.10 -51.93 -0.42 0.10 16 47 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 48 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 49 H 0.07 0.45 8.10 -51.93 -0.42 0.03 16 50 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 51 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 398.90 15.07 6.01 6.01 Total: -1.00 -32.58 398.90 -11.50 -44.08 By element: Atomic # 1 Polarization: 9.34 SS G_CDS: -8.32 Total: 1.02 kcal Atomic # 6 Polarization: 9.78 SS G_CDS: -3.43 Total: 6.35 kcal Atomic # 7 Polarization: -62.08 SS G_CDS: -0.81 Total: -62.89 kcal Atomic # 8 Polarization: -10.25 SS G_CDS: 0.08 Total: -10.18 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -32.58 -11.50 -44.08 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603149496.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.734 kcal (2) G-P(sol) polarization free energy of solvation -32.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.082 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds