Wall clock time and date at job start Wed Apr 1 2020 05:24:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 N 1.40293 * 126.01184 * 2 1 4 4 C 1.30159 * 108.30619 * 179.97438 * 3 2 1 5 5 C 1.40378 * 108.31437 * 0.10074 * 4 3 2 6 6 C 1.35348 * 107.97138 * 359.87521 * 5 4 3 7 7 N 1.39505 * 126.28452 * 180.09225 * 6 5 4 8 8 C 1.34770 * 119.99869 * 237.17052 * 7 6 5 9 9 O 1.21590 * 120.00254 * 2.64983 * 8 7 6 10 10 N 1.34783 * 119.99867 * 182.65747 * 8 7 6 11 11 C 1.47074 * 120.87881 * 354.59881 * 10 8 7 12 12 C 1.53699 * 108.27551 * 128.75918 * 11 10 8 13 13 N 1.46892 * 109.25731 * 54.08155 * 12 11 10 14 14 C 1.46900 * 111.00065 * 172.60504 * 13 12 11 15 15 C 1.50701 * 109.47510 * 294.30502 * 14 13 12 16 16 H 1.07998 * 119.99852 * 359.97438 * 15 14 13 17 17 C 1.37868 * 120.00105 * 179.97438 * 15 14 13 18 18 N 1.31517 * 120.00294 * 359.97438 * 17 15 14 19 19 Si 1.86806 * 120.00043 * 179.97438 * 17 15 14 20 20 H 1.48496 * 109.46874 * 59.99959 * 19 17 15 21 21 H 1.48497 * 109.47047 * 179.97438 * 19 17 15 22 22 H 1.48496 * 109.46778 * 299.99786 * 19 17 15 23 23 C 1.46896 * 111.26907 * 296.75712 * 13 12 11 24 24 C 1.47075 * 120.88103 * 174.88115 * 10 8 7 25 25 C 1.50866 * 123.69326 * 179.62228 * 5 4 3 26 26 C 1.53329 * 108.22117 * 343.73949 * 25 5 4 27 27 C 1.53033 * 109.76556 * 50.34935 * 26 25 5 28 28 C 1.50969 * 128.22528 * 180.28702 * 4 3 2 29 29 H 1.08994 * 109.47476 * 85.66313 * 1 2 3 30 30 H 1.09005 * 109.46500 * 205.66510 * 1 2 3 31 31 H 1.08998 * 109.47061 * 325.66222 * 1 2 3 32 32 H 0.96994 * 119.99838 * 57.16609 * 7 6 5 33 33 H 1.09005 * 109.63271 * 248.52511 * 11 10 8 34 34 H 1.09001 * 109.63113 * 9.10601 * 11 10 8 35 35 H 1.09001 * 109.64880 * 294.07528 * 12 11 10 36 36 H 1.09005 * 109.44184 * 173.96452 * 12 11 10 37 37 H 1.09002 * 109.47024 * 54.30688 * 14 13 12 38 38 H 1.08998 * 109.47366 * 174.29780 * 14 13 12 39 39 H 0.96998 * 120.00570 * 179.97438 * 18 17 15 40 40 H 1.09003 * 109.49231 * 303.14352 * 23 13 12 41 41 H 1.09001 * 109.49196 * 183.06290 * 23 13 12 42 42 H 1.09000 * 109.63262 * 350.89539 * 24 10 8 43 43 H 1.09000 * 109.63114 * 111.47554 * 24 10 8 44 44 H 1.09002 * 109.71609 * 103.24422 * 25 5 4 45 45 H 1.08997 * 109.71620 * 223.90114 * 25 5 4 46 46 H 1.09006 * 109.36083 * 290.28818 * 26 25 5 47 47 H 1.09004 * 109.41394 * 170.44201 * 26 25 5 48 48 H 1.08998 * 109.42829 * 168.26393 * 27 26 25 49 49 H 1.09000 * 109.37677 * 48.39629 * 27 26 25 50 50 H 1.09001 * 109.71245 * 282.90353 * 28 4 3 51 51 H 1.08999 * 109.71731 * 43.50974 * 28 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2898 1.1348 0.0000 4 6 3.5297 0.7390 0.0006 5 6 3.5447 -0.6647 -0.0014 6 6 2.2617 -1.0960 -0.0004 7 7 1.8375 -2.4250 0.0001 8 6 1.0290 -2.8746 -0.9799 9 8 0.7083 -2.1354 -1.8905 10 7 0.5758 -4.1436 -0.9506 11 6 1.0435 -5.0886 0.0748 12 6 -0.1868 -5.7296 0.7365 13 7 -1.0453 -6.3151 -0.3016 14 6 -2.1413 -7.0892 0.2964 15 6 -1.5759 -8.2839 1.0204 16 1 -0.5091 -8.4516 1.0344 17 6 -2.4204 -9.1627 1.6647 18 7 -3.7195 -8.9582 1.6481 19 14 -1.7196 -10.6440 2.5615 20 1 -0.7966 -10.1845 3.6302 21 1 -2.8274 -11.4257 3.1671 22 1 -0.9776 -11.4989 1.6004 23 6 -1.5639 -5.2828 -1.2090 24 6 -0.3947 -4.6218 -1.9468 25 6 4.8087 -1.4883 -0.0097 26 6 5.9713 -0.5780 -0.4229 27 6 5.9580 0.6957 0.4253 28 6 4.7803 1.5847 0.0067 29 1 -0.3634 0.0777 -1.0246 30 1 -0.3632 -0.9263 0.4451 31 1 -0.3633 0.8486 0.5797 32 1 2.1244 -3.0254 0.7058 33 1 1.6564 -5.8605 -0.3908 34 1 1.6282 -4.5556 0.8245 35 1 -0.7450 -4.9708 1.2849 36 1 0.1370 -6.5109 1.4242 37 1 -2.6867 -6.4618 1.0014 38 1 -2.8182 -7.4267 -0.4884 39 1 -4.3137 -9.5766 2.1011 40 1 -2.1030 -4.5302 -0.6335 41 1 -2.2386 -5.7402 -1.9326 42 1 -0.7614 -3.7800 -2.5343 43 1 0.0825 -5.3496 -2.6030 44 1 4.9942 -1.8873 0.9875 45 1 4.7092 -2.3075 -0.7218 46 1 5.8670 -0.3139 -1.4754 47 1 6.9142 -1.1038 -0.2727 48 1 6.8918 1.2386 0.2789 49 1 5.8547 0.4288 1.4770 50 1 4.9584 1.9850 -0.9914 51 1 4.6667 2.4039 0.7166 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000603149496.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:24:27 Heat of formation + Delta-G solvation = 41.029792 kcal Electronic energy + Delta-G solvation = -31323.245246 eV Core-core repulsion = 27258.470403 eV Total energy + Delta-G solvation = -4064.774844 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.84975 -41.41811 -39.21815 -37.59786 -36.23743 -35.98852 -34.41006 -33.41884 -32.45156 -31.88022 -30.09390 -28.96054 -28.01621 -27.20122 -24.80060 -24.32009 -24.02424 -22.88949 -22.77699 -21.34915 -20.81991 -19.82373 -19.38540 -18.50953 -18.32642 -17.14291 -16.75804 -16.61975 -16.44739 -16.21599 -16.02613 -15.69780 -15.49987 -15.35227 -15.17676 -14.87403 -14.66915 -14.59663 -14.14669 -14.04853 -13.83374 -13.60146 -13.53638 -13.40719 -13.06239 -12.82948 -12.59449 -12.52610 -12.46696 -12.38010 -12.29678 -12.19400 -11.82283 -11.71843 -11.59036 -11.48069 -11.34607 -11.30707 -10.99131 -10.60663 -10.09105 -9.78229 -9.18686 -9.06984 -8.19827 -6.30216 0.62162 1.10732 1.44235 1.46841 1.53738 1.54634 1.63568 1.94124 2.41158 2.59777 3.12375 3.19995 3.33559 3.85170 3.93082 3.98162 4.03645 4.08721 4.10378 4.16256 4.20004 4.22430 4.40109 4.44430 4.46207 4.48904 4.60383 4.63089 4.69184 4.71982 4.79204 4.81363 4.90847 4.92470 4.98988 5.03955 5.13287 5.13638 5.20357 5.27077 5.29683 5.35021 5.36997 5.55953 5.60404 5.67166 5.73341 6.02217 6.03200 6.24814 6.52589 6.55522 6.72660 6.85691 7.22112 7.40003 8.91114 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.018090 B = 0.002293 C = 0.002167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1547.417035 B =12206.056050 C =12916.106990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.113 3.887 2 N -0.384 5.384 3 N -0.311 5.311 4 C 0.080 3.920 5 C -0.244 4.244 6 C 0.314 3.686 7 N -0.657 5.657 8 C 0.711 3.289 9 O -0.611 6.611 10 N -0.617 5.617 11 C 0.123 3.877 12 C 0.051 3.949 13 N -0.537 5.537 14 C 0.209 3.791 15 C -0.521 4.521 16 H 0.071 0.929 17 C 0.000 4.000 18 N -0.937 5.937 19 Si 0.969 3.031 20 H -0.264 1.264 21 H -0.289 1.289 22 H -0.268 1.268 23 C 0.043 3.957 24 C 0.147 3.853 25 C -0.036 4.036 26 C -0.115 4.115 27 C -0.109 4.109 28 C -0.038 4.038 29 H 0.066 0.934 30 H 0.077 0.923 31 H 0.101 0.899 32 H 0.427 0.573 33 H 0.094 0.906 34 H 0.106 0.894 35 H 0.016 0.984 36 H 0.089 0.911 37 H -0.041 1.041 38 H 0.005 0.995 39 H 0.263 0.737 40 H 0.016 0.984 41 H 0.083 0.917 42 H 0.090 0.910 43 H 0.085 0.915 44 H 0.082 0.918 45 H 0.062 0.938 46 H 0.055 0.945 47 H 0.087 0.913 48 H 0.094 0.906 49 H 0.068 0.932 50 H 0.089 0.911 51 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.915 17.210 -1.182 26.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.029 4.029 2 N -0.169 5.169 3 N -0.134 5.134 4 C -0.087 4.087 5 C -0.258 4.258 6 C 0.096 3.904 7 N -0.316 5.316 8 C 0.413 3.587 9 O -0.490 6.490 10 N -0.353 5.353 11 C 0.001 3.999 12 C -0.079 4.079 13 N -0.262 5.262 14 C 0.083 3.917 15 C -0.559 4.559 16 H 0.089 0.911 17 C -0.198 4.198 18 N -0.577 5.577 19 Si 0.794 3.206 20 H -0.189 1.189 21 H -0.215 1.215 22 H -0.192 1.192 23 C -0.086 4.086 24 C 0.024 3.976 25 C -0.074 4.074 26 C -0.153 4.153 27 C -0.147 4.147 28 C -0.077 4.077 29 H 0.085 0.915 30 H 0.095 0.905 31 H 0.119 0.881 32 H 0.270 0.730 33 H 0.112 0.888 34 H 0.124 0.876 35 H 0.034 0.966 36 H 0.107 0.893 37 H -0.023 1.023 38 H 0.023 0.977 39 H 0.072 0.928 40 H 0.035 0.965 41 H 0.102 0.898 42 H 0.109 0.891 43 H 0.103 0.897 44 H 0.101 0.899 45 H 0.081 0.919 46 H 0.074 0.926 47 H 0.106 0.894 48 H 0.112 0.888 49 H 0.087 0.913 50 H 0.107 0.893 51 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 18.796 18.272 -2.056 26.294 hybrid contribution -1.076 -1.379 1.164 2.101 sum 17.721 16.893 -0.892 24.499 Atomic orbital electron populations 1.21749 0.73848 1.04001 1.03263 1.48843 1.06989 1.02889 1.58179 1.77048 1.02206 1.07063 1.27049 1.22737 0.93805 0.93991 0.98155 1.20024 0.93421 0.94577 1.17821 1.17178 0.89629 0.80169 1.03473 1.41861 1.53014 1.07681 1.29014 1.15851 0.78837 0.82135 0.81874 1.90930 1.63771 1.57072 1.37210 1.47398 1.45909 1.08782 1.33228 1.22064 0.95666 0.92167 0.90025 1.22444 0.94081 0.97588 0.93737 1.61995 1.21639 1.22973 1.19590 1.19367 0.88395 0.91852 0.92128 1.21427 0.94096 1.08482 1.31881 0.91052 1.25931 0.95024 1.01340 0.97477 1.70086 1.03866 1.38838 1.44911 0.85432 0.77750 0.78626 0.78801 1.18855 1.21512 1.19248 1.22463 0.96493 0.93053 0.96569 1.21563 0.87872 0.98598 0.89596 1.20031 0.89287 0.96130 1.01949 1.21553 0.97943 0.96095 0.99688 1.21554 0.97352 0.95596 1.00185 1.20321 0.87418 0.96467 1.03472 0.91545 0.90464 0.88062 0.72954 0.88771 0.87638 0.96623 0.89269 1.02316 0.97711 0.92797 0.96542 0.89826 0.89137 0.89707 0.89930 0.91939 0.92602 0.89442 0.88752 0.91298 0.89254 0.89151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.78 10.04 127.77 1.28 4.07 16 2 N -0.38 -10.78 3.99 -366.88 -1.46 -12.25 16 3 N -0.31 -8.78 12.55 -47.17 -0.59 -9.37 16 4 C 0.08 1.87 7.10 43.41 0.31 2.17 16 5 C -0.24 -5.55 5.91 -19.96 -0.12 -5.66 16 6 C 0.31 8.16 6.64 131.06 0.87 9.03 16 7 N -0.66 -15.02 5.18 -322.68 -1.67 -16.69 16 8 C 0.71 19.98 7.55 179.05 1.35 21.33 16 9 O -0.61 -21.48 14.45 -4.00 -0.06 -21.54 16 10 N -0.62 -16.34 3.00 -835.04 -2.51 -18.85 16 11 C 0.12 2.85 6.63 86.51 0.57 3.42 16 12 C 0.05 1.65 5.47 86.54 0.47 2.12 16 13 N -0.54 -21.03 4.62 -898.89 -4.15 -25.19 16 14 C 0.21 10.51 4.72 85.56 0.40 10.92 16 15 C -0.52 -27.55 8.41 25.60 0.22 -27.34 16 16 H 0.07 3.59 7.13 -2.91 -0.02 3.57 16 17 C 0.00 0.02 5.46 84.65 0.46 0.48 16 18 N -0.94 -54.82 13.29 21.44 0.28 -54.54 16 19 Si 0.97 42.07 29.54 68.60 2.03 44.09 16 20 H -0.26 -10.82 7.11 99.48 0.71 -10.11 16 21 H -0.29 -12.54 7.11 99.48 0.71 -11.84 16 22 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 23 C 0.04 1.46 5.62 86.38 0.49 1.95 16 24 C 0.15 4.14 6.58 86.35 0.57 4.71 16 25 C -0.04 -0.56 6.27 30.01 0.19 -0.37 16 26 C -0.12 -1.35 5.86 30.72 0.18 -1.17 16 27 C -0.11 -1.10 5.86 30.73 0.18 -0.92 16 28 C -0.04 -0.55 6.31 30.06 0.19 -0.37 16 29 H 0.07 1.80 7.89 -2.39 -0.02 1.78 16 30 H 0.08 1.86 7.66 -2.38 -0.02 1.85 16 31 H 0.10 2.06 8.14 -2.39 -0.02 2.04 16 32 H 0.43 7.22 6.31 -92.71 -0.58 6.63 16 33 H 0.09 2.06 8.14 -2.38 -0.02 2.04 16 34 H 0.11 1.67 5.62 -2.39 -0.01 1.66 16 35 H 0.02 0.54 8.14 -2.39 -0.02 0.52 16 36 H 0.09 3.10 6.67 -2.38 -0.02 3.09 16 37 H -0.04 -2.28 8.12 -2.39 -0.02 -2.30 16 38 H 0.00 0.26 7.97 -2.39 -0.02 0.24 16 39 H 0.26 14.61 8.31 -92.71 -0.77 13.84 16 40 H 0.02 0.58 8.14 -2.39 -0.02 0.56 16 41 H 0.08 2.80 7.99 -2.39 -0.02 2.78 16 42 H 0.09 2.59 7.10 -2.39 -0.02 2.57 16 43 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 44 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 45 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 46 H 0.06 0.76 8.10 -2.38 -0.02 0.74 16 47 H 0.09 0.69 8.14 -2.38 -0.02 0.68 16 48 H 0.09 0.55 8.14 -2.39 -0.02 0.53 16 49 H 0.07 0.70 8.10 -2.39 -0.02 0.68 16 50 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 51 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 Total: -1.00 -72.14 398.90 -0.16 -72.30 By element: Atomic # 1 Polarization: 17.31 SS G_CDS: 0.35 Total: 17.66 kcal Atomic # 6 Polarization: 16.75 SS G_CDS: 7.62 Total: 24.36 kcal Atomic # 7 Polarization: -126.78 SS G_CDS: -10.10 Total: -136.87 kcal Atomic # 8 Polarization: -21.48 SS G_CDS: -0.06 Total: -21.54 kcal Atomic # 14 Polarization: 42.07 SS G_CDS: 2.03 Total: 44.09 kcal Total: -72.14 -0.16 -72.30 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603149496.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.330 kcal (2) G-P(sol) polarization free energy of solvation -72.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.300 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds