Wall clock time and date at job start Wed Apr 1 2020 05:29:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.47844 * 111.00223 * 2 1 4 4 C 1.54904 * 104.79983 * 146.36129 * 3 2 1 5 5 C 1.55139 * 101.65070 * 322.92775 * 4 3 2 6 6 C 1.47451 * 110.99740 * 120.83730 * 2 1 3 7 7 H 1.09000 * 109.88537 * 117.17721 * 6 2 1 8 8 C 1.50700 * 109.88592 * 356.14940 * 6 2 1 9 9 C 1.35367 * 126.38474 * 117.52311 * 8 6 2 10 10 C 1.41495 * 105.50320 * 180.13519 * 9 8 6 11 11 C 1.47711 * 126.51908 * 179.83645 * 10 9 8 12 12 O 1.21570 * 119.99882 * 359.71533 * 11 10 9 13 13 N 1.34780 * 120.00110 * 179.70766 * 11 10 9 14 14 C 1.46497 * 119.99922 * 179.97438 * 13 11 10 15 15 C 1.53042 * 109.45788 * 155.00721 * 14 13 11 16 16 C 1.53194 * 109.31151 * 181.39013 * 15 14 13 17 17 N 1.46918 * 108.77432 * 305.36434 * 16 15 14 18 18 C 1.36946 * 120.62861 * 233.58702 * 17 16 15 19 19 H 1.07999 * 119.99601 * 28.85731 * 18 17 16 20 20 C 1.38807 * 119.99854 * 208.57979 * 18 17 16 21 21 N 1.31618 * 120.00381 * 19.01014 * 20 18 17 22 22 Si 1.86801 * 120.00092 * 199.01192 * 20 18 17 23 23 H 1.48494 * 109.47353 * 94.97831 * 22 20 18 24 24 H 1.48496 * 109.47421 * 214.98490 * 22 20 18 25 25 H 1.48510 * 109.46669 * 334.97987 * 22 20 18 26 26 C 1.46917 * 118.74119 * 53.86068 * 17 16 15 27 27 C 1.53036 * 109.46344 * 275.07573 * 14 13 11 28 28 N 1.31810 * 106.96625 * 359.57938 * 10 9 8 29 29 N 1.28474 * 110.06919 * 0.26245 * 28 10 9 30 30 H 0.97005 * 124.88001 * 180.02562 * 29 28 10 31 31 H 1.09002 * 109.46885 * 306.05323 * 1 2 3 32 32 H 1.09001 * 109.46629 * 66.05413 * 1 2 3 33 33 H 1.08996 * 109.47181 * 186.05179 * 1 2 3 34 34 H 1.09005 * 110.36805 * 265.19317 * 3 2 1 35 35 H 1.08997 * 110.37316 * 27.41682 * 3 2 1 36 36 H 1.09000 * 110.98976 * 81.01579 * 4 3 2 37 37 H 1.09005 * 110.98857 * 204.79721 * 4 3 2 38 38 H 1.09003 * 110.70451 * 277.26715 * 5 4 3 39 39 H 1.08998 * 110.70636 * 154.03824 * 5 4 3 40 40 H 1.08003 * 127.24630 * 359.96913 * 9 8 6 41 41 H 0.96999 * 119.99912 * 0.02562 * 13 11 10 42 42 H 1.08997 * 109.45963 * 35.03704 * 14 13 11 43 43 H 1.09000 * 109.49631 * 61.43254 * 15 14 13 44 44 H 1.09005 * 109.52109 * 301.35830 * 15 14 13 45 45 H 1.09004 * 109.58175 * 185.57643 * 16 15 14 46 46 H 1.09000 * 109.70747 * 65.22634 * 16 15 14 47 47 H 0.96999 * 120.00217 * 180.02562 * 21 20 18 48 48 H 1.09004 * 109.58435 * 65.92677 * 26 17 16 49 49 H 1.09002 * 109.59096 * 186.35084 * 26 17 16 50 50 H 1.09002 * 109.49878 * 298.56148 * 27 14 13 51 51 H 1.08994 * 109.50168 * 58.63160 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9989 1.3802 0.0000 4 6 3.3048 1.3027 0.8296 5 6 2.9158 0.2823 1.9315 6 6 1.9974 -0.7056 1.1820 7 1 2.5673 -1.5800 0.8677 8 6 0.8610 -1.1290 2.0767 9 6 0.5241 -2.3995 2.4003 10 6 -0.5990 -2.2874 3.2535 11 6 -1.3440 -3.4002 3.8768 12 8 -1.0070 -4.5495 3.6681 13 7 -2.3972 -3.1415 4.6770 14 6 -3.1364 -4.2452 5.2946 15 6 -3.8209 -3.7494 6.5705 16 6 -4.5641 -4.9142 7.2321 17 7 -5.4789 -5.5107 6.2493 18 6 -6.8088 -5.6647 6.5376 19 1 -7.2957 -4.9840 7.2202 20 6 -7.5322 -6.6923 5.9481 21 7 -6.9038 -7.7239 5.4254 22 14 -9.3978 -6.6110 5.8965 23 1 -9.8325 -6.0365 4.5980 24 1 -9.9572 -7.9785 6.0448 25 1 -9.8867 -5.7532 7.0058 26 6 -4.9388 -5.9442 4.9536 27 6 -4.1924 -4.7629 4.3154 28 7 -0.8507 -1.0008 3.3909 29 7 -0.0071 -0.3114 2.7101 30 1 0.0046 0.6572 2.6588 31 1 -0.3633 0.6048 0.8309 32 1 -0.3632 0.4171 -0.9392 33 1 -0.3633 -1.0219 0.1083 34 1 2.2148 1.7037 -1.0183 35 1 1.2881 2.0596 0.4705 36 1 4.1302 0.9281 0.2244 37 1 3.5499 2.2723 1.2634 38 1 2.3744 0.7749 2.7392 39 1 3.7999 -0.2278 2.3139 40 1 1.0088 -3.3077 2.0735 41 1 -2.6663 -2.2245 4.8433 42 1 -2.4456 -5.0509 5.5428 43 1 -4.5302 -2.9606 6.3198 44 1 -3.0707 -3.3589 7.2582 45 1 -5.1339 -4.5465 8.0855 46 1 -3.8478 -5.6645 7.5670 47 1 -7.4094 -8.4418 5.0131 48 1 -4.2508 -6.7761 5.1045 49 1 -5.7558 -6.2565 4.3031 50 1 -4.8983 -3.9646 4.0860 51 1 -3.7064 -5.0936 3.3975 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000896245031.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:29:47 Heat of formation + Delta-G solvation = 50.175405 kcal Electronic energy + Delta-G solvation = -30647.724742 eV Core-core repulsion = 26583.346482 eV Total energy + Delta-G solvation = -4064.378260 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -44.03789 -40.86707 -39.92293 -38.88215 -36.04520 -34.05901 -33.26991 -32.95153 -32.82200 -31.70928 -31.15232 -28.86694 -27.19902 -26.67659 -25.28823 -23.93420 -23.43401 -22.86058 -22.18250 -21.85559 -21.31200 -20.62588 -18.82665 -18.60553 -17.95156 -17.37230 -17.15719 -16.76313 -16.65545 -16.28797 -15.79175 -15.62860 -15.36234 -15.16775 -15.07750 -14.82826 -14.67523 -14.56114 -14.33059 -14.12949 -14.07851 -13.58760 -13.20575 -13.05906 -12.71361 -12.65550 -12.61846 -12.54304 -12.30526 -12.14710 -12.09186 -12.04676 -12.01268 -11.87879 -11.65362 -11.55932 -11.48344 -11.13929 -10.58818 -10.51714 -10.23171 -10.01694 -9.39073 -8.71820 -7.87978 -5.33690 0.42452 0.94503 1.47184 1.48888 1.58291 1.70235 2.14854 2.31128 2.51606 2.97073 3.22896 3.27987 3.38430 3.58109 3.66206 3.72789 3.84123 4.04767 4.07215 4.14439 4.27126 4.31520 4.34511 4.38440 4.45959 4.46942 4.54670 4.61238 4.64774 4.77205 4.85566 4.87936 4.91060 4.96346 5.02404 5.04278 5.06028 5.11843 5.14187 5.21074 5.28223 5.30523 5.43478 5.48539 5.64099 5.68057 5.82701 5.86737 5.97679 6.38471 6.43782 6.77433 7.12855 7.15805 7.83775 8.37409 9.19250 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.026543 B = 0.001895 C = 0.001862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1054.638716 B =14774.678265 C =15031.487299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.531 5.531 3 C 0.031 3.969 4 C -0.122 4.122 5 C -0.135 4.135 6 C 0.140 3.860 7 H 0.116 0.884 8 C 0.025 3.975 9 C -0.184 4.184 10 C -0.027 4.027 11 C 0.596 3.404 12 O -0.572 6.572 13 N -0.698 5.698 14 C 0.161 3.839 15 C -0.122 4.122 16 C 0.142 3.858 17 N -0.609 5.609 18 C -0.262 4.262 19 H 0.073 0.927 20 C -0.054 4.054 21 N -0.936 5.936 22 Si 0.968 3.032 23 H -0.288 1.288 24 H -0.297 1.297 25 H -0.264 1.264 26 C 0.184 3.816 27 C -0.131 4.131 28 N -0.254 5.254 29 N -0.360 5.360 30 H 0.455 0.545 31 H 0.031 0.969 32 H 0.078 0.922 33 H 0.053 0.947 34 H 0.090 0.910 35 H 0.056 0.944 36 H 0.083 0.917 37 H 0.094 0.906 38 H 0.069 0.931 39 H 0.093 0.907 40 H 0.161 0.839 41 H 0.414 0.586 42 H 0.063 0.937 43 H 0.073 0.927 44 H 0.090 0.910 45 H 0.069 0.931 46 H 0.014 0.986 47 H 0.250 0.750 48 H -0.006 1.006 49 H 0.053 0.947 50 H 0.060 0.940 51 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.236 25.126 -9.249 34.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.255 5.255 3 C -0.096 4.096 4 C -0.160 4.160 5 C -0.174 4.174 6 C 0.031 3.969 7 H 0.134 0.866 8 C -0.102 4.102 9 C -0.212 4.212 10 C -0.187 4.187 11 C 0.382 3.618 12 O -0.449 6.449 13 N -0.348 5.348 14 C 0.057 3.943 15 C -0.161 4.161 16 C 0.016 3.984 17 N -0.332 5.332 18 C -0.392 4.392 19 H 0.091 0.909 20 C -0.249 4.249 21 N -0.582 5.582 22 Si 0.796 3.204 23 H -0.215 1.215 24 H -0.224 1.224 25 H -0.188 1.188 26 C 0.057 3.943 27 C -0.171 4.171 28 N -0.092 5.092 29 N -0.078 5.078 30 H 0.304 0.696 31 H 0.049 0.951 32 H 0.097 0.903 33 H 0.072 0.928 34 H 0.108 0.892 35 H 0.074 0.926 36 H 0.102 0.898 37 H 0.112 0.888 38 H 0.088 0.912 39 H 0.112 0.888 40 H 0.179 0.821 41 H 0.251 0.749 42 H 0.081 0.919 43 H 0.092 0.908 44 H 0.109 0.891 45 H 0.087 0.913 46 H 0.032 0.968 47 H 0.059 0.941 48 H 0.012 0.988 49 H 0.071 0.929 50 H 0.079 0.921 51 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 21.804 24.622 -9.347 34.191 hybrid contribution -1.137 -0.215 0.165 1.169 sum 20.666 24.407 -9.183 33.273 Atomic orbital electron populations 1.22682 0.87578 1.01243 1.01520 1.63884 1.08083 1.15859 1.37703 1.23295 0.96311 0.88063 1.01909 1.22722 0.97289 0.99880 0.96135 1.22905 0.99923 0.96552 0.98022 1.21360 0.89968 0.99426 0.86164 0.86626 1.21787 0.97476 0.89959 1.00935 1.21671 0.98652 0.98266 1.02639 1.21694 1.00795 0.90607 1.05613 1.17273 0.79657 0.86743 0.78142 1.90789 1.69029 1.22369 1.62759 1.45922 1.30057 1.10947 1.47899 1.20753 0.91944 0.88660 0.92931 1.22142 0.99535 0.99079 0.95334 1.21035 0.92112 0.93164 0.92055 1.44361 1.05116 1.71624 1.12118 1.19554 0.85552 1.08039 1.26052 0.90938 1.25874 1.02515 0.94485 1.02024 1.70222 1.35868 1.08567 1.43552 0.85239 0.80505 0.76543 0.78101 1.21468 1.22363 1.18781 1.20532 0.94923 0.91665 0.87144 1.22389 0.97451 0.99406 0.97858 1.73509 1.15639 1.04191 1.15837 1.43551 1.20734 1.10348 1.33173 0.69631 0.95064 0.90329 0.92772 0.89206 0.92615 0.89839 0.88778 0.91180 0.88813 0.82124 0.74940 0.91863 0.90792 0.89131 0.91301 0.96781 0.94143 0.98810 0.92877 0.92145 0.93525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 8.30 127.69 1.06 1.29 16 2 N -0.53 -5.90 5.44 -890.90 -4.85 -10.75 16 3 C 0.03 0.20 6.73 86.77 0.58 0.78 16 4 C -0.12 -0.49 7.08 31.98 0.23 -0.27 16 5 C -0.14 -0.84 6.46 31.77 0.21 -0.63 16 6 C 0.14 1.51 3.90 44.51 0.17 1.68 16 7 H 0.12 1.30 8.12 -2.39 -0.02 1.28 16 8 C 0.03 0.39 3.67 41.40 0.15 0.55 16 9 C -0.18 -4.15 10.72 22.41 0.24 -3.91 16 10 C -0.03 -0.73 7.13 42.45 0.30 -0.43 16 11 C 0.60 19.86 7.79 86.75 0.68 20.54 16 12 O -0.57 -23.55 16.59 -3.94 -0.07 -23.62 16 13 N -0.70 -21.28 5.07 -445.41 -2.26 -23.54 16 14 C 0.16 5.83 2.41 45.02 0.11 5.94 16 15 C -0.12 -3.95 5.55 30.67 0.17 -3.78 16 16 C 0.14 5.87 6.51 86.36 0.56 6.43 16 17 N -0.61 -31.25 2.98 -698.27 -2.08 -33.33 16 18 C -0.26 -14.53 9.57 84.03 0.80 -13.73 16 19 H 0.07 3.85 7.90 -2.91 -0.02 3.83 16 20 C -0.05 -3.06 4.86 84.86 0.41 -2.65 16 21 N -0.94 -57.34 11.35 21.65 0.25 -57.09 16 22 Si 0.97 45.58 29.59 68.60 2.03 47.61 16 23 H -0.29 -13.42 7.11 99.48 0.71 -12.72 16 24 H -0.30 -14.11 7.11 99.48 0.71 -13.41 16 25 H -0.26 -11.63 7.11 99.48 0.71 -10.93 16 26 C 0.18 9.51 5.34 86.51 0.46 9.97 16 27 C -0.13 -5.51 5.67 30.82 0.17 -5.33 16 28 N -0.25 -5.41 11.92 -48.18 -0.57 -5.98 16 29 N -0.36 -5.16 5.13 -47.93 -0.25 -5.41 16 30 H 0.46 3.61 7.87 -219.98 -1.73 1.88 16 31 H 0.03 0.32 5.41 -2.39 -0.01 0.31 16 32 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 33 H 0.05 0.95 7.14 -2.39 -0.02 0.93 16 34 H 0.09 0.54 8.14 -2.38 -0.02 0.52 16 35 H 0.06 0.26 7.68 -2.39 -0.02 0.24 16 36 H 0.08 0.35 8.14 -2.39 -0.02 0.33 16 37 H 0.09 0.13 8.14 -2.38 -0.02 0.11 16 38 H 0.07 0.40 7.56 -2.39 -0.02 0.38 16 39 H 0.09 0.50 8.14 -2.39 -0.02 0.48 16 40 H 0.16 3.63 8.06 -2.91 -0.02 3.61 16 41 H 0.41 10.49 8.33 -92.71 -0.77 9.72 16 42 H 0.06 2.59 7.58 -2.39 -0.02 2.57 16 43 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 44 H 0.09 2.39 8.14 -2.38 -0.02 2.37 16 45 H 0.07 2.68 7.93 -2.38 -0.02 2.66 16 46 H 0.01 0.60 8.14 -2.39 -0.02 0.58 16 47 H 0.25 14.80 8.31 -92.71 -0.77 14.03 16 48 H -0.01 -0.35 8.14 -2.38 -0.02 -0.37 16 49 H 0.05 3.07 6.15 -2.39 -0.01 3.06 16 50 H 0.06 2.48 8.14 -2.39 -0.02 2.46 16 51 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 Total: -1.00 -73.53 398.67 -3.04 -76.57 By element: Atomic # 1 Polarization: 20.64 SS G_CDS: -1.55 Total: 19.09 kcal Atomic # 6 Polarization: 10.14 SS G_CDS: 6.31 Total: 16.46 kcal Atomic # 7 Polarization: -126.34 SS G_CDS: -9.77 Total: -136.11 kcal Atomic # 8 Polarization: -23.55 SS G_CDS: -0.07 Total: -23.62 kcal Atomic # 14 Polarization: 45.58 SS G_CDS: 2.03 Total: 47.61 kcal Total: -73.53 -3.04 -76.57 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000896245031.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.746 kcal (2) G-P(sol) polarization free energy of solvation -73.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.570 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds