Wall clock time and date at job start Wed Apr 1 2020 05:29:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.47908 * 111.00323 * 2 1 4 4 C 1.53986 * 107.22536 * 214.25537 * 3 2 1 5 5 C 1.54594 * 105.14099 * 1.12261 * 4 3 2 6 6 C 1.48809 * 111.18718 * 242.66193 * 2 1 3 7 7 H 1.09002 * 110.66136 * 41.00538 * 6 2 1 8 8 C 1.50707 * 110.69650 * 278.02510 * 6 2 1 9 9 C 1.35359 * 126.38074 * 131.02561 * 8 6 2 10 10 C 1.41511 * 105.50130 * 180.02562 * 9 8 6 11 11 C 1.47704 * 126.51848 * 179.97438 * 10 9 8 12 12 O 1.21572 * 120.00149 * 353.54253 * 11 10 9 13 13 N 1.34775 * 119.99780 * 173.53882 * 11 10 9 14 14 C 1.47082 * 120.88232 * 183.85108 * 13 11 10 15 15 C 1.53699 * 108.27477 * 128.75348 * 14 13 11 16 16 N 1.46897 * 109.25710 * 54.09065 * 15 14 13 17 17 C 1.46893 * 111.00311 * 172.60487 * 16 15 14 18 18 C 1.50696 * 109.47169 * 294.30050 * 17 16 15 19 19 H 1.08001 * 120.00063 * 359.97438 * 18 17 16 20 20 C 1.37883 * 120.00138 * 179.97438 * 18 17 16 21 21 N 1.31510 * 119.99896 * 359.97438 * 20 18 17 22 22 Si 1.86804 * 120.00005 * 179.97438 * 20 18 17 23 23 H 1.48504 * 109.46848 * 60.00240 * 22 20 18 24 24 H 1.48499 * 109.47107 * 180.02562 * 22 20 18 25 25 H 1.48496 * 109.47141 * 300.00509 * 22 20 18 26 26 C 1.46906 * 111.26320 * 296.75016 * 16 15 14 27 27 C 1.47080 * 120.88445 * 4.13116 * 13 11 10 28 28 N 1.31805 * 106.95798 * 359.97438 * 10 9 8 29 29 N 1.28465 * 110.07736 * 359.71931 * 28 10 9 30 30 H 0.97001 * 124.88866 * 180.29346 * 29 28 10 31 31 H 1.09005 * 109.46701 * 59.87376 * 1 2 3 32 32 H 1.08993 * 109.47475 * 179.87422 * 1 2 3 33 33 H 1.09000 * 109.47064 * 299.87605 * 1 2 3 34 34 H 1.08993 * 109.91769 * 94.80163 * 3 2 1 35 35 H 1.09001 * 109.91438 * 333.70295 * 3 2 1 36 36 H 1.09001 * 110.30972 * 120.04087 * 4 3 2 37 37 H 1.09004 * 110.30917 * 242.21139 * 4 3 2 38 38 H 1.09007 * 110.72243 * 140.31901 * 5 4 3 39 39 H 1.09002 * 110.72705 * 263.60077 * 5 4 3 40 40 H 1.07999 * 127.25266 * 0.02562 * 9 8 6 41 41 H 1.08998 * 109.62979 * 248.52622 * 14 13 11 42 42 H 1.09000 * 109.62643 * 9.10350 * 14 13 11 43 43 H 1.08996 * 109.65017 * 294.07627 * 15 14 13 44 44 H 1.09002 * 109.41928 * 173.95104 * 15 14 13 45 45 H 1.09010 * 109.47301 * 54.29563 * 17 16 15 46 46 H 1.08992 * 109.47560 * 174.29384 * 17 16 15 47 47 H 0.96994 * 119.99901 * 179.97438 * 21 20 18 48 48 H 1.08997 * 109.49713 * 303.14941 * 26 16 15 49 49 H 1.09000 * 109.51239 * 183.07469 * 26 16 15 50 50 H 1.09000 * 109.62512 * 350.89659 * 27 13 11 51 51 H 1.08996 * 109.62850 * 111.47518 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9991 1.3808 0.0000 4 6 3.2974 1.3708 -0.8279 5 6 3.4527 -0.0872 -1.3178 6 6 2.0068 -0.6372 -1.2325 7 1 1.4281 -0.3352 -2.1055 8 6 2.0158 -2.1380 -1.0958 9 6 1.5362 -3.0290 -1.9949 10 6 1.7677 -4.3034 -1.4248 11 6 1.4208 -5.6093 -2.0213 12 8 0.7770 -5.6552 -3.0516 13 7 1.8179 -6.7500 -1.4235 14 6 1.5564 -8.0579 -2.0434 15 6 2.8778 -8.8415 -2.0912 16 7 3.4560 -8.8990 -0.7420 17 6 4.6269 -9.7853 -0.7083 18 6 4.1923 -11.2023 -0.9806 19 1 3.1504 -11.4225 -1.1603 20 6 5.1249 -12.2177 -1.0004 21 7 6.3937 -11.9496 -0.7821 22 14 4.5860 -13.9744 -1.3372 23 1 3.9470 -14.0480 -2.6758 24 1 5.7697 -14.8704 -1.3033 25 1 3.6128 -14.4011 -0.3000 26 6 3.7972 -7.5571 -0.2510 27 6 2.5190 -6.7205 -0.1308 28 7 2.3518 -4.1033 -0.2603 29 7 2.5092 -2.8447 -0.0564 30 1 2.9206 -2.4576 0.7322 31 1 -0.3633 0.5158 -0.8889 32 1 -0.3634 -1.0276 -0.0023 33 1 -0.3633 0.5119 0.8911 34 1 2.2123 1.6967 1.0211 35 1 1.2744 2.0567 -0.4540 36 1 3.2097 2.0481 -1.6774 37 1 4.1459 1.6527 -0.2043 38 1 3.8149 -0.1122 -2.3457 39 1 4.1176 -0.6466 -0.6597 40 1 1.0743 -2.8130 -2.9468 41 1 0.8241 -8.6048 -1.4495 42 1 1.1776 -7.9143 -3.0553 43 1 3.5750 -8.3437 -2.7649 44 1 2.6863 -9.8535 -2.4481 45 1 5.3419 -9.4720 -1.4692 46 1 5.0953 -9.7314 0.2744 47 1 7.0497 -12.6639 -0.7956 48 1 4.4817 -7.0770 -0.9504 49 1 4.2728 -7.6370 0.7265 50 1 2.7769 -5.6922 0.1223 51 1 1.8774 -7.1413 0.6433 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000899179746.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:29:31 Heat of formation + Delta-G solvation = 71.146454 kcal Electronic energy + Delta-G solvation = -30741.895937 eV Core-core repulsion = 26678.427050 eV Total energy + Delta-G solvation = -4063.468887 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.92543 -39.68590 -39.25920 -37.33190 -34.35926 -32.77464 -32.50701 -32.13090 -31.96736 -30.50346 -28.43307 -28.03816 -26.10608 -25.63519 -24.09299 -23.03810 -22.27946 -21.73893 -21.43964 -21.21293 -20.12088 -18.48765 -18.05762 -16.85437 -16.55401 -16.30398 -15.92773 -15.62279 -15.42570 -14.89943 -14.70307 -14.56454 -14.32401 -14.27258 -13.85814 -13.76025 -13.64777 -13.56872 -13.39356 -12.98778 -12.70461 -12.28461 -12.24395 -12.05325 -11.99740 -11.89485 -11.69854 -11.34426 -11.19678 -11.13854 -10.82703 -10.70185 -10.64150 -10.47266 -10.23713 -9.90219 -9.64408 -9.48973 -9.24206 -9.19389 -9.08611 -8.43714 -8.31125 -7.22981 -6.01389 -4.02925 1.50567 1.88943 2.64983 3.21905 3.35479 3.38047 3.39200 3.42395 3.51427 4.01383 4.07347 4.30973 4.37152 4.44337 4.49977 4.66012 4.82043 4.90958 4.93547 4.97007 5.02078 5.17591 5.23575 5.33655 5.34227 5.40745 5.44872 5.48570 5.50699 5.55977 5.59875 5.62911 5.78027 5.83645 5.95044 6.02469 6.11279 6.21420 6.36845 6.38050 6.39304 6.55178 6.62017 6.77560 6.97327 7.30138 7.35054 7.60757 7.80020 7.83135 8.08725 8.19793 8.35938 8.55165 9.04276 9.61266 11.09408 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.025015 B = 0.001995 C = 0.001918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1119.037411 B =14031.178074 C =14597.880901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.522 5.522 3 C 0.035 3.965 4 C -0.132 4.132 5 C -0.118 4.118 6 C 0.130 3.870 7 H 0.083 0.917 8 C 0.035 3.965 9 C -0.175 4.175 10 C 0.001 3.999 11 C 0.597 3.403 12 O -0.545 6.545 13 N -0.592 5.592 14 C 0.115 3.885 15 C 0.052 3.948 16 N -0.537 5.537 17 C 0.194 3.806 18 C -0.508 4.508 19 H 0.064 0.936 20 C 0.055 3.945 21 N -0.899 5.899 22 Si 0.899 3.101 23 H -0.277 1.277 24 H -0.288 1.288 25 H -0.276 1.276 26 C 0.044 3.956 27 C 0.083 3.917 28 N -0.253 5.253 29 N -0.367 5.367 30 H 0.446 0.554 31 H 0.033 0.967 32 H 0.072 0.928 33 H 0.071 0.929 34 H 0.082 0.918 35 H 0.049 0.951 36 H 0.071 0.929 37 H 0.076 0.924 38 H 0.082 0.918 39 H 0.075 0.925 40 H 0.160 0.840 41 H 0.074 0.926 42 H 0.088 0.912 43 H 0.024 0.976 44 H 0.097 0.903 45 H -0.010 1.010 46 H 0.031 0.969 47 H 0.262 0.738 48 H 0.023 0.977 49 H 0.078 0.922 50 H 0.131 0.869 51 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.495 29.991 1.669 31.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 N -0.247 5.247 3 C -0.093 4.093 4 C -0.170 4.170 5 C -0.156 4.156 6 C 0.021 3.979 7 H 0.101 0.899 8 C -0.092 4.092 9 C -0.203 4.203 10 C -0.159 4.159 11 C 0.383 3.617 12 O -0.421 6.421 13 N -0.323 5.323 14 C -0.007 4.007 15 C -0.077 4.077 16 N -0.262 5.262 17 C 0.069 3.931 18 C -0.547 4.547 19 H 0.082 0.918 20 C -0.146 4.146 21 N -0.538 5.538 22 Si 0.727 3.273 23 H -0.202 1.202 24 H -0.214 1.214 25 H -0.202 1.202 26 C -0.086 4.086 27 C -0.041 4.041 28 N -0.088 5.088 29 N -0.079 5.079 30 H 0.291 0.709 31 H 0.051 0.949 32 H 0.091 0.909 33 H 0.090 0.910 34 H 0.101 0.899 35 H 0.067 0.933 36 H 0.090 0.910 37 H 0.095 0.905 38 H 0.100 0.900 39 H 0.094 0.906 40 H 0.178 0.822 41 H 0.092 0.908 42 H 0.106 0.894 43 H 0.042 0.958 44 H 0.115 0.885 45 H 0.008 0.992 46 H 0.049 0.951 47 H 0.071 0.929 48 H 0.042 0.958 49 H 0.097 0.903 50 H 0.148 0.852 51 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -8.451 28.806 2.806 30.151 hybrid contribution 0.136 0.291 -1.496 1.530 sum -8.315 29.097 1.310 30.290 Atomic orbital electron populations 1.22535 0.86910 1.02803 1.01049 1.64679 1.08975 1.15242 1.35800 1.22878 0.95969 0.89268 1.01147 1.22426 0.97889 0.96810 0.99875 1.22559 0.94942 0.95585 1.02550 1.21312 0.96815 0.86841 0.92972 0.89869 1.20868 1.03552 0.94083 0.90695 1.21445 1.06979 0.89968 1.01957 1.21949 1.05375 0.95231 0.93346 1.17001 0.79441 0.81822 0.83443 1.90757 1.40636 1.86612 1.24120 1.48077 1.56137 1.05730 1.22404 1.22006 0.98236 0.81589 0.98875 1.22414 0.93817 1.00683 0.90784 1.62094 1.33703 1.08069 1.22328 1.19710 0.85821 0.90983 0.96595 1.21123 0.94245 0.91468 1.47860 0.91832 1.24998 0.94847 0.99293 0.95496 1.69947 1.01010 1.32886 1.49985 0.86548 0.77872 0.84051 0.78861 1.20242 1.21419 1.20154 1.22376 0.95185 0.90614 1.00421 1.22827 0.93517 1.03929 0.83799 1.73321 1.18912 0.98021 1.18583 1.43414 1.43495 1.03155 1.17870 0.70918 0.94877 0.90926 0.90988 0.89915 0.93286 0.91013 0.90483 0.89954 0.90621 0.82230 0.90754 0.89376 0.95761 0.88519 0.99202 0.95107 0.92884 0.95846 0.90319 0.85199 0.91214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.09 9.31 60.06 0.56 0.65 16 2 N -0.52 -3.14 5.24 -231.99 -1.22 -4.35 16 3 C 0.04 0.16 6.69 -2.75 -0.02 0.14 16 4 C -0.13 -0.52 6.93 -25.38 -0.18 -0.69 16 5 C -0.12 -0.61 6.49 -24.87 -0.16 -0.77 16 6 C 0.13 0.83 2.79 -66.78 -0.19 0.65 16 7 H 0.08 0.50 7.97 -51.93 -0.41 0.09 16 8 C 0.04 0.32 5.93 -82.21 -0.49 -0.17 16 9 C -0.17 -2.04 10.73 -39.36 -0.42 -2.46 16 10 C 0.00 0.01 6.90 -82.77 -0.57 -0.56 16 11 C 0.60 10.23 7.71 -12.39 -0.10 10.13 16 12 O -0.54 -10.52 16.40 5.30 0.09 -10.43 16 13 N -0.59 -10.14 3.00 -173.34 -0.52 -10.66 16 14 C 0.12 2.03 6.62 -3.36 -0.02 2.00 16 15 C 0.05 1.06 5.47 -3.46 -0.02 1.04 16 16 N -0.54 -11.77 4.62 -235.47 -1.09 -12.86 16 17 C 0.19 5.09 4.72 -4.98 -0.02 5.07 16 18 C -0.51 -14.27 8.41 -34.44 -0.29 -14.56 16 19 H 0.06 1.75 7.13 -52.49 -0.37 1.38 16 20 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 21 N -0.90 -26.81 13.29 55.43 0.74 -26.07 16 22 Si 0.90 21.73 29.54 -169.99 -5.02 16.71 16 23 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 24 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 25 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 26 C 0.04 0.81 5.62 -3.70 -0.02 0.79 16 27 C 0.08 1.33 6.46 -3.60 -0.02 1.31 16 28 N -0.25 -3.15 8.58 33.42 0.29 -2.87 16 29 N -0.37 -3.42 6.83 33.50 0.23 -3.19 16 30 H 0.45 3.03 8.96 -190.44 -1.71 1.32 16 31 H 0.03 0.17 8.01 -51.93 -0.42 -0.24 16 32 H 0.07 0.52 8.03 -51.93 -0.42 0.10 16 33 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.08 0.35 8.14 -51.93 -0.42 -0.08 16 35 H 0.05 0.20 7.73 -51.93 -0.40 -0.20 16 36 H 0.07 0.24 8.14 -51.93 -0.42 -0.19 16 37 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 38 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.08 0.42 8.05 -51.93 -0.42 0.00 16 40 H 0.16 1.71 8.06 -52.49 -0.42 1.29 16 41 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16 42 H 0.09 1.52 7.08 -51.93 -0.37 1.15 16 43 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 44 H 0.10 2.05 6.67 -51.93 -0.35 1.71 16 45 H -0.01 -0.28 8.13 -51.92 -0.42 -0.70 16 46 H 0.03 0.86 7.97 -51.93 -0.41 0.44 16 47 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 48 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 49 H 0.08 1.40 7.99 -51.93 -0.41 0.99 16 50 H 0.13 1.90 3.83 -106.01 -0.41 1.49 16 51 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 LS Contribution 402.24 15.07 6.06 6.06 Total: -1.00 -33.11 402.24 -12.38 -45.49 By element: Atomic # 1 Polarization: 8.02 SS G_CDS: -9.88 Total: -1.86 kcal Atomic # 6 Polarization: 6.07 SS G_CDS: -2.05 Total: 4.02 kcal Atomic # 7 Polarization: -58.42 SS G_CDS: -1.57 Total: -60.00 kcal Atomic # 8 Polarization: -10.52 SS G_CDS: 0.09 Total: -10.43 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -33.11 -12.38 -45.49 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000899179746.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.639 kcal (2) G-P(sol) polarization free energy of solvation -33.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.492 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds