Wall clock time and date at job start Wed Apr 1 2020 05:34:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 N 1.40082 * 126.03716 * 2 1 4 4 C 1.30834 * 108.20514 * 180.23380 * 3 2 1 5 5 C 1.50706 * 125.89850 * 179.81232 * 4 3 2 6 6 C 1.53001 * 117.49535 * 163.70276 * 5 4 3 7 7 C 1.52995 * 117.49765 * 95.04578 * 5 4 3 8 8 C 1.39868 * 108.20185 * 359.77565 * 4 3 2 9 9 C 1.34942 * 126.03606 * 179.83950 * 2 1 3 10 10 C 1.50698 * 126.13090 * 0.03913 * 9 2 1 11 11 N 1.46497 * 109.47150 * 274.71261 * 10 9 2 12 12 C 1.34780 * 120.00274 * 179.97438 * 11 10 9 13 13 O 1.21586 * 119.99575 * 0.02562 * 12 11 10 14 14 N 1.34773 * 120.00398 * 179.97438 * 12 11 10 15 15 C 1.46491 * 120.00497 * 180.02562 * 14 12 11 16 16 C 1.53038 * 109.46175 * 275.03522 * 15 14 12 17 17 C 1.53200 * 109.31474 * 178.60111 * 16 15 14 18 18 N 1.46925 * 108.76700 * 54.64649 * 17 16 15 19 19 C 1.36938 * 120.62757 * 126.40680 * 18 17 16 20 20 H 1.08004 * 119.99930 * 331.82772 * 19 18 17 21 21 C 1.38803 * 119.99887 * 151.83118 * 19 18 17 22 22 N 1.31620 * 120.00139 * 343.06779 * 21 19 18 23 23 Si 1.86806 * 119.99918 * 163.07005 * 21 19 18 24 24 H 1.48493 * 109.47248 * 0.02562 * 23 21 19 25 25 H 1.48502 * 109.46828 * 120.00132 * 23 21 19 26 26 H 1.48499 * 109.47047 * 239.99796 * 23 21 19 27 27 C 1.46924 * 118.74379 * 306.39188 * 18 17 16 28 28 C 1.53044 * 109.46327 * 154.97561 * 15 14 12 29 29 H 1.09004 * 109.46748 * 270.15859 * 1 2 3 30 30 H 1.08998 * 109.46936 * 30.15527 * 1 2 3 31 31 H 1.08999 * 109.46967 * 150.15938 * 1 2 3 32 32 H 1.08997 * 115.54940 * 309.37198 * 5 4 3 33 33 H 1.08999 * 117.50336 * 0.02562 * 6 5 4 34 34 H 1.09006 * 117.49274 * 145.02339 * 6 5 4 35 35 H 1.08999 * 117.49696 * 214.97747 * 7 5 4 36 36 H 1.08996 * 117.50258 * 359.97339 * 7 5 4 37 37 H 1.08000 * 126.03899 * 179.97438 * 8 4 3 38 38 H 1.08999 * 109.46903 * 34.70840 * 10 9 2 39 39 H 1.08997 * 109.47466 * 154.70810 * 10 9 2 40 40 H 0.97003 * 120.00051 * 359.97438 * 11 10 9 41 41 H 0.97003 * 119.99926 * 0.02562 * 14 12 11 42 42 H 1.09003 * 109.46077 * 35.00357 * 15 14 12 43 43 H 1.09002 * 109.49908 * 298.55861 * 16 15 14 44 44 H 1.08996 * 109.50249 * 58.65629 * 16 15 14 45 45 H 1.09006 * 109.59252 * 294.86423 * 17 16 15 46 46 H 1.08994 * 109.70375 * 174.50297 * 17 16 15 47 47 H 0.97006 * 120.00049 * 179.97438 * 22 21 19 48 48 H 1.09006 * 109.58356 * 293.82140 * 27 18 17 49 49 H 1.08997 * 109.70558 * 173.46074 * 27 18 17 50 50 H 1.08995 * 109.49339 * 301.33725 * 28 15 14 51 51 H 1.09001 * 109.49405 * 61.43562 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2891 1.1327 0.0000 4 6 3.5346 0.7321 -0.0051 5 6 4.7497 1.6237 -0.0109 6 6 6.0914 0.9916 0.3646 7 6 5.3956 1.9463 1.3379 8 6 3.5437 -0.6665 -0.0033 9 6 2.2589 -1.0912 0.0031 10 6 1.7974 -2.5258 0.0062 11 7 1.5391 -2.9526 1.3836 12 6 1.1134 -4.2071 1.6319 13 8 0.9442 -4.9846 0.7126 14 7 0.8762 -4.5999 2.8991 15 6 0.4140 -5.9636 3.1690 16 6 -1.1078 -6.0251 3.0196 17 6 -1.5837 -7.4599 3.2682 18 7 -1.0878 -7.9021 4.5787 19 6 -1.9497 -8.3999 5.5191 20 1 -2.9807 -8.0782 5.5308 21 6 -1.4984 -9.3178 6.4574 22 7 -0.3671 -9.9603 6.2583 23 14 -2.4968 -9.6413 8.0028 24 1 -3.7192 -8.7984 7.9879 25 1 -2.8845 -11.0740 8.0507 26 1 -1.6804 -9.3092 9.1980 27 6 0.3505 -7.8003 4.8609 28 6 0.8047 -6.3617 4.5941 29 1 -0.3633 0.0028 1.0277 30 1 -0.3633 0.8886 -0.5162 31 1 -0.3633 -0.8914 -0.5114 32 1 4.7563 2.4042 -0.7717 33 1 6.0955 -0.0692 0.6155 34 1 6.9809 1.3566 -0.1489 35 1 5.8276 2.9390 1.4644 36 1 4.9416 1.5141 2.2296 37 1 4.4210 -1.2963 -0.0068 38 1 0.8822 -2.6143 -0.5792 39 1 2.5708 -3.1573 -0.4308 40 1 1.6744 -2.3323 2.1171 41 1 1.0115 -3.9797 3.6325 42 1 0.8765 -6.6507 2.4603 43 1 -1.5719 -5.3569 3.7451 44 1 -1.3872 -5.7189 2.0116 45 1 -1.1926 -8.1149 2.4896 46 1 -2.6732 -7.4924 3.2599 47 1 -0.0515 -10.6015 6.9142 48 1 0.8993 -8.4830 4.2121 49 1 0.5395 -8.0557 5.9035 50 1 1.8868 -6.2951 4.7067 51 1 0.3225 -5.6903 5.3046 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000917313191.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:34:35 Heat of formation + Delta-G solvation = 95.718825 kcal Electronic energy + Delta-G solvation = -29963.109863 eV Core-core repulsion = 25900.706514 eV Total energy + Delta-G solvation = -4062.403349 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.78296 -39.96939 -37.67703 -37.43908 -35.10716 -34.35934 -33.25879 -32.21414 -31.02923 -30.05893 -29.27758 -27.25868 -26.48148 -24.78256 -23.56985 -22.78119 -22.31351 -21.99016 -20.71136 -20.45777 -19.68634 -19.44496 -18.27058 -17.16309 -16.62508 -16.34933 -16.12005 -15.59571 -15.46812 -14.88144 -14.74126 -14.47596 -14.36568 -14.25850 -13.80203 -13.55900 -13.38215 -13.11291 -13.02997 -12.93843 -12.80834 -12.52119 -12.34679 -12.16457 -11.87993 -11.46366 -11.27649 -11.13380 -11.02551 -10.86696 -10.74309 -10.60549 -10.49479 -10.28145 -10.15509 -10.03359 -9.77244 -9.57749 -9.43254 -9.31643 -8.89033 -8.64581 -8.45644 -6.69105 -5.80488 -3.22682 1.30941 2.06099 2.24447 2.89168 3.28533 3.35874 3.43840 3.44010 3.46128 3.93976 4.08130 4.30689 4.44615 4.48576 4.50220 4.56560 4.75970 4.79070 4.95128 5.05360 5.19686 5.25890 5.28964 5.33505 5.34354 5.41662 5.48492 5.50258 5.60036 5.69488 5.73073 5.82348 5.88389 6.07222 6.21462 6.24824 6.27606 6.34141 6.47467 6.55767 6.57895 6.59894 6.78978 6.85348 6.97260 7.06229 7.31317 7.35281 7.61334 7.78802 8.06018 8.43745 8.66863 9.19946 9.83175 10.40208 11.28418 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.020672 B = 0.001779 C = 0.001729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1354.141373 B =15732.346879 C =16187.201730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.098 3.902 2 N -0.363 5.363 3 N -0.283 5.283 4 C 0.101 3.899 5 C -0.081 4.081 6 C -0.165 4.165 7 C -0.165 4.165 8 C -0.243 4.243 9 C 0.066 3.934 10 C 0.206 3.794 11 N -0.750 5.750 12 C 0.704 3.296 13 O -0.588 6.588 14 N -0.737 5.737 15 C 0.169 3.831 16 C -0.139 4.139 17 C 0.147 3.853 18 N -0.593 5.593 19 C -0.251 4.251 20 H 0.066 0.934 21 C 0.001 3.999 22 N -0.903 5.903 23 Si 0.902 3.098 24 H -0.278 1.278 25 H -0.290 1.290 26 H -0.289 1.289 27 C 0.174 3.826 28 C -0.146 4.146 29 H 0.077 0.923 30 H 0.090 0.910 31 H 0.090 0.910 32 H 0.119 0.881 33 H 0.100 0.900 34 H 0.101 0.899 35 H 0.100 0.900 36 H 0.096 0.904 37 H 0.150 0.850 38 H 0.078 0.922 39 H 0.093 0.907 40 H 0.396 0.604 41 H 0.391 0.609 42 H 0.082 0.918 43 H 0.056 0.944 44 H 0.054 0.946 45 H 0.021 0.979 46 H 0.055 0.945 47 H 0.253 0.747 48 H 0.021 0.979 49 H 0.092 0.908 50 H 0.054 0.946 51 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.659 23.730 -11.759 28.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.145 5.145 3 N -0.105 5.105 4 C -0.064 4.064 5 C -0.101 4.101 6 C -0.202 4.202 7 C -0.203 4.203 8 C -0.273 4.273 9 C -0.061 4.061 10 C 0.081 3.919 11 N -0.408 5.408 12 C 0.404 3.596 13 O -0.466 6.466 14 N -0.390 5.390 15 C 0.065 3.935 16 C -0.179 4.179 17 C 0.020 3.980 18 N -0.315 5.315 19 C -0.381 4.381 20 H 0.084 0.916 21 C -0.197 4.197 22 N -0.547 5.547 23 Si 0.732 3.268 24 H -0.203 1.203 25 H -0.217 1.217 26 H -0.216 1.216 27 C 0.048 3.952 28 C -0.186 4.186 29 H 0.095 0.905 30 H 0.109 0.891 31 H 0.109 0.891 32 H 0.137 0.863 33 H 0.119 0.881 34 H 0.120 0.880 35 H 0.118 0.882 36 H 0.114 0.886 37 H 0.167 0.833 38 H 0.096 0.904 39 H 0.111 0.889 40 H 0.229 0.771 41 H 0.224 0.776 42 H 0.100 0.900 43 H 0.075 0.925 44 H 0.073 0.927 45 H 0.039 0.961 46 H 0.074 0.926 47 H 0.064 0.936 48 H 0.040 0.960 49 H 0.110 0.890 50 H 0.073 0.927 51 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 8.560 23.824 -12.525 28.244 hybrid contribution 0.087 -0.221 1.470 1.489 sum 8.647 23.602 -11.055 27.460 Atomic orbital electron populations 1.21930 0.73913 1.04722 1.03782 1.48480 1.06594 1.03083 1.56361 1.77332 1.01167 1.07376 1.24652 1.21331 0.92165 0.93005 0.99905 1.20136 0.88978 1.00514 1.00511 1.23034 0.94547 0.99669 1.02963 1.23000 1.03098 1.00915 0.93254 1.21154 0.96272 0.94296 1.15561 1.21026 0.91270 0.90144 1.03698 1.19504 1.01878 0.86771 0.83793 1.45123 1.74193 1.13171 1.08282 1.15954 0.78061 0.81551 0.84057 1.90938 1.59281 1.52811 1.43571 1.45554 1.71760 1.15996 1.05710 1.20932 0.94591 0.80165 0.97805 1.22392 0.95089 1.00262 1.00204 1.20880 0.97484 0.91194 0.88409 1.44099 1.03670 1.72992 1.10786 1.19228 0.93436 1.18186 1.07214 0.91619 1.25057 0.97876 0.96144 1.00650 1.70036 1.22744 1.27071 1.34889 0.86232 0.79535 0.77630 0.83437 1.20286 1.21721 1.21582 1.20743 0.83793 0.88529 1.02159 1.22549 0.99558 1.02404 0.94119 0.90452 0.89083 0.89149 0.86299 0.88119 0.88033 0.88180 0.88586 0.83265 0.90436 0.88861 0.77088 0.77596 0.89987 0.92497 0.92735 0.96139 0.92600 0.93649 0.96050 0.89031 0.92740 0.92254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.63 11.27 59.85 0.67 1.30 16 2 N -0.36 -3.41 4.01 -63.88 -0.26 -3.66 16 3 N -0.28 -3.15 12.58 33.67 0.42 -2.72 16 4 C 0.10 0.99 6.85 -82.40 -0.56 0.43 16 5 C -0.08 -0.61 6.33 -91.77 -0.58 -1.19 16 6 C -0.16 -0.93 10.02 -26.69 -0.27 -1.20 16 7 C -0.16 -1.03 10.24 -26.70 -0.27 -1.30 16 8 C -0.24 -2.22 10.02 -40.01 -0.40 -2.62 16 9 C 0.07 0.60 6.30 -82.27 -0.52 0.08 16 10 C 0.21 1.91 5.85 -5.20 -0.03 1.88 16 11 N -0.75 -7.52 5.55 -66.42 -0.37 -7.89 16 12 C 0.70 9.90 8.53 -86.92 -0.74 9.16 16 13 O -0.59 -10.74 16.01 5.29 0.08 -10.65 16 14 N -0.74 -10.00 5.08 -58.64 -0.30 -10.30 16 15 C 0.17 2.89 2.42 -67.89 -0.16 2.72 16 16 C -0.14 -2.51 5.65 -26.61 -0.15 -2.66 16 17 C 0.15 3.15 6.52 -3.71 -0.02 3.12 16 18 N -0.59 -14.67 2.99 -172.31 -0.52 -15.19 16 19 C -0.25 -6.81 9.58 -15.06 -0.14 -6.95 16 20 H 0.07 1.76 7.89 -52.48 -0.41 1.34 16 21 C 0.00 0.03 4.92 -17.43 -0.09 -0.05 16 22 N -0.90 -25.91 11.19 55.49 0.62 -25.29 16 23 Si 0.90 21.42 29.59 -169.99 -5.03 16.39 16 24 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 25 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 26 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 27 C 0.17 4.05 5.30 -3.71 -0.02 4.03 16 28 C -0.15 -2.63 5.55 -26.61 -0.15 -2.78 16 29 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.09 0.48 7.14 -51.93 -0.37 0.11 16 32 H 0.12 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.10 0.57 7.15 -51.93 -0.37 0.20 16 34 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.15 1.15 7.39 -52.49 -0.39 0.76 16 38 H 0.08 0.72 7.23 -51.93 -0.38 0.34 16 39 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 40 H 0.40 3.26 8.48 -40.82 -0.35 2.91 16 41 H 0.39 4.25 8.62 -40.82 -0.35 3.90 16 42 H 0.08 1.60 7.58 -51.93 -0.39 1.21 16 43 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 44 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 45 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 46 H 0.06 1.17 7.93 -51.93 -0.41 0.75 16 47 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 48 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 49 H 0.09 2.37 6.07 -51.93 -0.31 2.05 16 50 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 51 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 LS Contribution 413.30 15.07 6.23 6.23 Total: -1.00 -33.40 413.30 -10.92 -44.32 By element: Atomic # 1 Polarization: 13.16 SS G_CDS: -8.37 Total: 4.79 kcal Atomic # 6 Polarization: 7.41 SS G_CDS: -3.44 Total: 3.97 kcal Atomic # 7 Polarization: -64.65 SS G_CDS: -0.39 Total: -65.05 kcal Atomic # 8 Polarization: -10.74 SS G_CDS: 0.08 Total: -10.65 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.03 Total: 16.39 kcal Total LS contribution 6.23 Total: 6.23 kcal Total: -33.40 -10.92 -44.32 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000917313191.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.035 kcal (2) G-P(sol) polarization free energy of solvation -33.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.316 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds