Wall clock time and date at job start Wed Apr 1 2020 05:38:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 N 1.40084 * 126.04015 * 2 1 4 4 C 1.30827 * 108.20999 * 180.17180 * 3 2 1 5 5 C 1.50704 * 125.90174 * 179.85213 * 4 3 2 6 6 N 1.46500 * 109.47102 * 274.69189 * 5 4 3 7 7 C 1.34777 * 119.99655 * 179.97438 * 6 5 4 8 8 O 1.21585 * 120.00078 * 5.08351 * 7 6 5 9 9 N 1.34777 * 119.99639 * 185.08598 * 7 6 5 10 10 C 1.47081 * 120.87929 * 175.00697 * 9 7 6 11 11 C 1.53232 * 108.51969 * 231.20311 * 10 9 7 12 12 N 1.46903 * 109.34170 * 306.16911 * 11 10 9 13 13 C 1.46898 * 111.00325 * 187.25544 * 12 11 10 14 14 C 1.50699 * 109.47455 * 170.00034 * 13 12 11 15 15 H 1.08003 * 119.99363 * 0.02562 * 14 13 12 16 16 C 1.37871 * 120.00158 * 179.72133 * 14 13 12 17 17 N 1.31516 * 119.99922 * 180.27360 * 16 14 13 18 18 Si 1.86803 * 120.00118 * 0.27662 * 16 14 13 19 19 H 1.48498 * 109.47010 * 89.99902 * 18 16 14 20 20 H 1.48497 * 109.47271 * 209.99859 * 18 16 14 21 21 H 1.48503 * 109.47050 * 329.99918 * 18 16 14 22 22 C 1.46897 * 111.26780 * 63.10294 * 12 11 10 23 23 C 1.47078 * 120.88358 * 355.02107 * 9 7 6 24 24 C 1.39874 * 108.20254 * 359.58865 * 4 3 2 25 25 C 1.34950 * 126.03776 * 179.71495 * 2 1 3 26 26 C 1.50703 * 126.12896 * 359.96097 * 25 2 1 27 27 C 1.52995 * 117.50060 * 213.76686 * 26 25 2 28 28 C 1.52995 * 117.49713 * 145.10247 * 26 25 2 29 29 H 1.09000 * 109.46960 * 270.28735 * 1 2 3 30 30 H 1.08997 * 109.47044 * 30.28620 * 1 2 3 31 31 H 1.09003 * 109.47158 * 150.28738 * 1 2 3 32 32 H 1.09006 * 109.47081 * 154.69028 * 5 4 3 33 33 H 1.09003 * 109.47009 * 34.69379 * 5 4 3 34 34 H 0.96995 * 119.99868 * 0.02562 * 6 5 4 35 35 H 1.08999 * 109.62946 * 111.49200 * 10 9 7 36 36 H 1.09000 * 109.78911 * 351.00348 * 10 9 7 37 37 H 1.09000 * 109.49603 * 186.21085 * 11 10 9 38 38 H 1.09000 * 109.49541 * 66.12851 * 11 10 9 39 39 H 1.08999 * 109.47130 * 49.99654 * 13 12 11 40 40 H 1.09004 * 109.46764 * 290.00230 * 13 12 11 41 41 H 0.97002 * 119.99400 * 179.97438 * 17 16 14 42 42 H 1.09004 * 109.49209 * 56.85538 * 22 12 11 43 43 H 1.09001 * 109.49155 * 176.93457 * 22 12 11 44 44 H 1.08992 * 109.62939 * 248.50761 * 23 9 7 45 45 H 1.09005 * 109.62604 * 9.09078 * 23 9 7 46 46 H 1.08002 * 126.04245 * 180.28275 * 24 4 3 47 47 H 1.09003 * 115.54513 * 359.44001 * 26 25 2 48 48 H 1.09002 * 117.49757 * 359.97438 * 27 26 25 49 49 H 1.09000 * 117.49865 * 145.01941 * 27 26 25 50 50 H 1.09000 * 117.49897 * 214.98021 * 28 26 25 51 51 H 1.09001 * 117.50441 * 359.97438 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2892 1.1327 0.0000 4 6 3.5346 0.7321 -0.0037 5 6 4.7497 1.6237 -0.0083 6 7 5.0721 2.0027 -1.3861 7 6 6.1275 2.8030 -1.6354 8 8 6.8660 3.1353 -0.7286 9 7 6.3640 3.2351 -2.8900 10 6 7.4435 4.1950 -3.1669 11 6 6.8654 5.3551 -3.9841 12 7 6.1878 4.8222 -5.1736 13 6 5.7693 5.9069 -6.0715 14 6 5.3046 5.3240 -7.3811 15 1 5.3183 4.2545 -7.5312 16 6 4.8560 6.1554 -8.3853 17 7 4.4453 5.6463 -9.5262 18 14 4.8315 8.0051 -8.1252 19 1 6.1266 8.5839 -8.5644 20 1 3.7279 8.6021 -8.9194 21 1 4.6206 8.2998 -6.6851 22 6 5.0459 3.9761 -4.8022 23 6 5.5494 2.7594 -4.0184 24 6 3.5437 -0.6665 0.0033 25 6 2.2589 -1.0912 0.0054 26 6 1.7974 -2.5258 0.0134 27 6 2.6554 -3.5398 0.7727 28 6 2.6402 -3.5433 -0.7580 29 1 -0.3633 0.0052 1.0277 30 1 -0.3633 0.8874 -0.5183 31 1 -0.3633 -0.8926 -0.5094 32 1 5.5936 1.0898 0.4288 33 1 4.5446 2.5203 0.5767 34 1 4.5257 1.6782 -2.1189 35 1 8.2330 3.7040 -3.7357 36 1 7.8495 4.5743 -2.2291 37 1 7.6719 6.0203 -4.2924 38 1 6.1501 5.9080 -3.3752 39 1 6.6111 6.5760 -6.2499 40 1 4.9531 6.4644 -5.6118 41 1 4.1294 6.2313 -10.2325 42 1 4.3559 4.5482 -4.1818 43 1 4.5329 3.6412 -5.7037 44 1 6.1569 2.1305 -4.6691 45 1 4.7000 2.1891 -3.6421 46 1 4.4211 -1.2963 0.0068 47 1 0.7173 -2.6721 0.0244 48 1 3.5540 -3.1693 1.2661 49 1 2.1398 -4.3534 1.2829 50 1 2.1147 -4.3593 -1.2541 51 1 3.5283 -3.1751 -1.2717 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000927663270.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:38:08 Heat of formation + Delta-G solvation = 101.100402 kcal Electronic energy + Delta-G solvation = -30215.794751 eV Core-core repulsion = 26153.624765 eV Total energy + Delta-G solvation = -4062.169986 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.75720 -40.15620 -37.80086 -37.52927 -35.28444 -34.42113 -33.28654 -32.34360 -30.79226 -30.20964 -29.01628 -28.08295 -25.92269 -25.01367 -23.90393 -23.29731 -22.89066 -21.79218 -20.65230 -20.50022 -19.70574 -19.23301 -18.04070 -17.27130 -16.83438 -16.30904 -15.73593 -15.63725 -15.48377 -14.99123 -14.72579 -14.55356 -14.43479 -14.22179 -14.08121 -13.81115 -13.65423 -13.48825 -13.19319 -12.98625 -12.75982 -12.55475 -12.41219 -12.11474 -12.05829 -12.01205 -11.52258 -11.45750 -11.21391 -11.15756 -11.07758 -10.77950 -10.75736 -10.57798 -10.33056 -9.97900 -9.89668 -9.40110 -9.34014 -9.12856 -8.79450 -8.60235 -8.33667 -7.43241 -6.09016 -4.06688 1.38677 2.06677 2.16595 2.97564 3.26693 3.33116 3.34432 3.36635 3.43651 3.88374 4.04502 4.07692 4.31485 4.39188 4.39869 4.44933 4.60693 4.67224 4.76573 5.02823 5.04444 5.13380 5.14794 5.22785 5.24964 5.33668 5.39149 5.41802 5.43346 5.54105 5.58707 5.60695 5.63033 5.75445 5.81341 5.88364 6.05691 6.22398 6.25676 6.40332 6.44146 6.44473 6.61156 6.62525 6.82818 6.93830 7.07118 7.38203 7.53945 7.81566 7.96810 8.04347 8.60477 8.69327 8.98144 9.52801 11.03815 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.012679 B = 0.002174 C = 0.002008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2207.908687 B =12878.601618 C =13943.266162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.099 3.901 2 N -0.367 5.367 3 N -0.273 5.273 4 C 0.059 3.941 5 C 0.225 3.775 6 N -0.744 5.744 7 C 0.711 3.289 8 O -0.598 6.598 9 N -0.625 5.625 10 C 0.138 3.862 11 C 0.037 3.963 12 N -0.525 5.525 13 C 0.162 3.838 14 C -0.510 4.510 15 H 0.081 0.919 16 C 0.069 3.931 17 N -0.899 5.899 18 Si 0.875 3.125 19 H -0.275 1.275 20 H -0.286 1.286 21 H -0.268 1.268 22 C 0.050 3.950 23 C 0.116 3.884 24 C -0.256 4.256 25 C 0.118 3.882 26 C -0.109 4.109 27 C -0.159 4.159 28 C -0.159 4.159 29 H 0.075 0.925 30 H 0.092 0.908 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.079 0.921 34 H 0.398 0.602 35 H 0.071 0.929 36 H 0.089 0.911 37 H 0.082 0.918 38 H 0.027 0.973 39 H 0.026 0.974 40 H -0.011 1.011 41 H 0.264 0.736 42 H 0.025 0.975 43 H 0.102 0.898 44 H 0.078 0.922 45 H 0.070 0.930 46 H 0.148 0.852 47 H 0.115 0.885 48 H 0.103 0.897 49 H 0.102 0.898 50 H 0.103 0.897 51 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.456 -18.255 21.318 28.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 N -0.149 5.149 3 N -0.096 5.096 4 C -0.107 4.107 5 C 0.099 3.901 6 N -0.403 5.403 7 C 0.413 3.587 8 O -0.477 6.477 9 N -0.362 5.362 10 C 0.015 3.985 11 C -0.093 4.093 12 N -0.250 5.250 13 C 0.036 3.964 14 C -0.549 4.549 15 H 0.099 0.901 16 C -0.133 4.133 17 N -0.538 5.538 18 Si 0.702 3.298 19 H -0.201 1.201 20 H -0.212 1.212 21 H -0.193 1.193 22 C -0.079 4.079 23 C -0.007 4.007 24 C -0.285 4.285 25 C -0.009 4.009 26 C -0.129 4.129 27 C -0.197 4.197 28 C -0.196 4.196 29 H 0.094 0.906 30 H 0.111 0.889 31 H 0.106 0.894 32 H 0.105 0.895 33 H 0.097 0.903 34 H 0.235 0.765 35 H 0.090 0.910 36 H 0.108 0.892 37 H 0.100 0.900 38 H 0.045 0.955 39 H 0.044 0.956 40 H 0.006 0.994 41 H 0.074 0.926 42 H 0.043 0.957 43 H 0.120 0.880 44 H 0.096 0.904 45 H 0.088 0.912 46 H 0.166 0.834 47 H 0.133 0.867 48 H 0.121 0.879 49 H 0.120 0.880 50 H 0.121 0.879 51 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -6.622 -17.200 21.563 28.367 hybrid contribution -0.714 0.723 -0.037 1.017 sum -7.336 -16.477 21.526 28.083 Atomic orbital electron populations 1.21888 0.74182 1.04719 1.03453 1.48412 1.06558 1.03105 1.56858 1.77440 1.01237 1.07180 1.23706 1.22173 0.93129 0.93890 1.01524 1.19264 0.90961 0.96588 0.83318 1.45177 1.32059 1.54309 1.08727 1.15725 0.81026 0.78977 0.82991 1.90882 1.49538 1.63278 1.44004 1.47369 1.36318 1.47288 1.05233 1.21590 0.88383 0.88857 0.99708 1.22499 0.98922 0.95813 0.92029 1.61884 1.26804 1.22829 1.13486 1.20184 0.94363 0.89361 0.92518 1.21006 1.41880 0.95994 0.95974 0.90071 1.24893 0.94899 0.98464 0.95038 1.69891 1.43719 1.35326 1.04894 0.86871 0.78066 0.86333 0.78544 1.20078 1.21217 1.19317 1.22353 0.92485 0.93570 0.99488 1.21849 0.94147 0.97150 0.87553 1.21032 0.96288 0.94138 1.17054 1.20141 0.90752 0.88698 1.01306 1.20435 0.98319 0.85554 1.08623 1.23098 1.01749 0.99981 0.94840 1.23114 1.01989 0.99957 0.94562 0.90648 0.88928 0.89436 0.89504 0.90324 0.76512 0.91024 0.89235 0.89988 0.95473 0.95557 0.99377 0.92636 0.95674 0.88027 0.90392 0.91191 0.83422 0.86702 0.87887 0.87970 0.87894 0.87787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.57 11.21 59.85 0.67 1.24 16 2 N -0.37 -3.59 4.01 -63.88 -0.26 -3.84 16 3 N -0.27 -3.40 12.57 33.67 0.42 -2.98 16 4 C 0.06 0.67 6.59 -82.41 -0.54 0.13 16 5 C 0.22 2.66 6.24 -5.19 -0.03 2.62 16 6 N -0.74 -9.71 5.46 -66.41 -0.36 -10.07 16 7 C 0.71 11.36 8.31 -86.92 -0.72 10.64 16 8 O -0.60 -11.23 15.83 5.29 0.08 -11.14 16 9 N -0.62 -9.78 3.01 -178.20 -0.54 -10.32 16 10 C 0.14 2.16 6.58 -3.60 -0.02 2.14 16 11 C 0.04 0.64 5.62 -3.70 -0.02 0.62 16 12 N -0.53 -10.71 4.62 -235.77 -1.09 -11.80 16 13 C 0.16 3.86 3.79 -4.98 -0.02 3.84 16 14 C -0.51 -14.12 8.96 -34.44 -0.31 -14.43 16 15 H 0.08 2.42 7.37 -52.48 -0.39 2.03 16 16 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 17 N -0.90 -27.09 13.96 55.43 0.77 -26.31 16 18 Si 0.87 21.34 27.47 -169.99 -4.67 16.67 16 19 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 20 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 21 H -0.27 -6.37 6.54 56.52 0.37 -6.00 16 22 C 0.05 0.92 5.46 -3.70 -0.02 0.90 16 23 C 0.12 1.72 6.60 -3.60 -0.02 1.70 16 24 C -0.26 -2.47 9.74 -40.01 -0.39 -2.86 16 25 C 0.12 1.04 6.62 -82.26 -0.54 0.49 16 26 C -0.11 -0.63 5.96 -91.77 -0.55 -1.18 16 27 C -0.16 -0.73 10.05 -26.69 -0.27 -1.00 16 28 C -0.16 -0.78 10.05 -26.69 -0.27 -1.04 16 29 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 30 H 0.09 0.54 8.14 -51.93 -0.42 0.11 16 31 H 0.09 0.30 7.23 -51.93 -0.38 -0.08 16 32 H 0.09 0.96 8.14 -51.93 -0.42 0.53 16 33 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.40 4.80 5.96 -40.82 -0.24 4.55 16 35 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 36 H 0.09 1.39 7.11 -51.93 -0.37 1.02 16 37 H 0.08 1.33 7.99 -51.93 -0.41 0.92 16 38 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.03 0.63 7.40 -51.93 -0.38 0.24 16 40 H -0.01 -0.28 7.17 -51.93 -0.37 -0.65 16 41 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 42 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.10 2.04 6.67 -51.93 -0.35 1.69 16 44 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 45 H 0.07 0.87 5.63 -51.93 -0.29 0.57 16 46 H 0.15 1.18 8.06 -52.49 -0.42 0.76 16 47 H 0.11 0.48 7.26 -51.93 -0.38 0.11 16 48 H 0.10 0.51 7.93 -51.93 -0.41 0.10 16 49 H 0.10 0.33 8.14 -51.93 -0.42 -0.09 16 50 H 0.10 0.38 8.14 -51.93 -0.42 -0.05 16 51 H 0.10 0.57 7.96 -51.93 -0.41 0.16 16 LS Contribution 408.40 15.07 6.15 6.15 Total: -1.00 -34.81 408.40 -10.84 -45.65 By element: Atomic # 1 Polarization: 10.51 SS G_CDS: -8.20 Total: 2.31 kcal Atomic # 6 Polarization: 8.84 SS G_CDS: -3.16 Total: 5.69 kcal Atomic # 7 Polarization: -64.28 SS G_CDS: -1.05 Total: -65.33 kcal Atomic # 8 Polarization: -11.23 SS G_CDS: 0.08 Total: -11.14 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -4.67 Total: 16.67 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -34.81 -10.84 -45.65 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000927663270.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.754 kcal (2) G-P(sol) polarization free energy of solvation -34.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.653 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds