Wall clock time and date at job start Wed Apr 1 2020 05:38:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 N 1.40084 * 126.04015 * 2 1 4 4 C 1.30827 * 108.20999 * 180.17180 * 3 2 1 5 5 C 1.50704 * 125.90174 * 179.85213 * 4 3 2 6 6 N 1.46500 * 109.47102 * 274.69189 * 5 4 3 7 7 C 1.34777 * 119.99655 * 179.97438 * 6 5 4 8 8 O 1.21585 * 120.00078 * 5.08351 * 7 6 5 9 9 N 1.34777 * 119.99639 * 185.08598 * 7 6 5 10 10 C 1.47081 * 120.87929 * 175.00697 * 9 7 6 11 11 C 1.53232 * 108.51969 * 231.20311 * 10 9 7 12 12 N 1.46903 * 109.34170 * 306.16911 * 11 10 9 13 13 C 1.46898 * 111.00325 * 187.25544 * 12 11 10 14 14 C 1.50699 * 109.47455 * 170.00034 * 13 12 11 15 15 H 1.08003 * 119.99363 * 0.02562 * 14 13 12 16 16 C 1.37871 * 120.00158 * 179.72133 * 14 13 12 17 17 N 1.31516 * 119.99922 * 180.27360 * 16 14 13 18 18 Si 1.86803 * 120.00118 * 0.27662 * 16 14 13 19 19 H 1.48498 * 109.47010 * 89.99902 * 18 16 14 20 20 H 1.48497 * 109.47271 * 209.99859 * 18 16 14 21 21 H 1.48503 * 109.47050 * 329.99918 * 18 16 14 22 22 C 1.46897 * 111.26780 * 63.10294 * 12 11 10 23 23 C 1.47078 * 120.88358 * 355.02107 * 9 7 6 24 24 C 1.39874 * 108.20254 * 359.58865 * 4 3 2 25 25 C 1.34950 * 126.03776 * 179.71495 * 2 1 3 26 26 C 1.50703 * 126.12896 * 359.96097 * 25 2 1 27 27 C 1.52995 * 117.50060 * 213.76686 * 26 25 2 28 28 C 1.52995 * 117.49713 * 145.10247 * 26 25 2 29 29 H 1.09000 * 109.46960 * 270.28735 * 1 2 3 30 30 H 1.08997 * 109.47044 * 30.28620 * 1 2 3 31 31 H 1.09003 * 109.47158 * 150.28738 * 1 2 3 32 32 H 1.09006 * 109.47081 * 154.69028 * 5 4 3 33 33 H 1.09003 * 109.47009 * 34.69379 * 5 4 3 34 34 H 0.96995 * 119.99868 * 0.02562 * 6 5 4 35 35 H 1.08999 * 109.62946 * 111.49200 * 10 9 7 36 36 H 1.09000 * 109.78911 * 351.00348 * 10 9 7 37 37 H 1.09000 * 109.49603 * 186.21085 * 11 10 9 38 38 H 1.09000 * 109.49541 * 66.12851 * 11 10 9 39 39 H 1.08999 * 109.47130 * 49.99654 * 13 12 11 40 40 H 1.09004 * 109.46764 * 290.00230 * 13 12 11 41 41 H 0.97002 * 119.99400 * 179.97438 * 17 16 14 42 42 H 1.09004 * 109.49209 * 56.85538 * 22 12 11 43 43 H 1.09001 * 109.49155 * 176.93457 * 22 12 11 44 44 H 1.08992 * 109.62939 * 248.50761 * 23 9 7 45 45 H 1.09005 * 109.62604 * 9.09078 * 23 9 7 46 46 H 1.08002 * 126.04245 * 180.28275 * 24 4 3 47 47 H 1.09003 * 115.54513 * 359.44001 * 26 25 2 48 48 H 1.09002 * 117.49757 * 359.97438 * 27 26 25 49 49 H 1.09000 * 117.49865 * 145.01941 * 27 26 25 50 50 H 1.09000 * 117.49897 * 214.98021 * 28 26 25 51 51 H 1.09001 * 117.50441 * 359.97438 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2892 1.1327 0.0000 4 6 3.5346 0.7321 -0.0037 5 6 4.7497 1.6237 -0.0083 6 7 5.0721 2.0027 -1.3861 7 6 6.1275 2.8030 -1.6354 8 8 6.8660 3.1353 -0.7286 9 7 6.3640 3.2351 -2.8900 10 6 7.4435 4.1950 -3.1669 11 6 6.8654 5.3551 -3.9841 12 7 6.1878 4.8222 -5.1736 13 6 5.7693 5.9069 -6.0715 14 6 5.3046 5.3240 -7.3811 15 1 5.3183 4.2545 -7.5312 16 6 4.8560 6.1554 -8.3853 17 7 4.4453 5.6463 -9.5262 18 14 4.8315 8.0051 -8.1252 19 1 6.1266 8.5839 -8.5644 20 1 3.7279 8.6021 -8.9194 21 1 4.6206 8.2998 -6.6851 22 6 5.0459 3.9761 -4.8022 23 6 5.5494 2.7594 -4.0184 24 6 3.5437 -0.6665 0.0033 25 6 2.2589 -1.0912 0.0054 26 6 1.7974 -2.5258 0.0134 27 6 2.6554 -3.5398 0.7727 28 6 2.6402 -3.5433 -0.7580 29 1 -0.3633 0.0052 1.0277 30 1 -0.3633 0.8874 -0.5183 31 1 -0.3633 -0.8926 -0.5094 32 1 5.5936 1.0898 0.4288 33 1 4.5446 2.5203 0.5767 34 1 4.5257 1.6782 -2.1189 35 1 8.2330 3.7040 -3.7357 36 1 7.8495 4.5743 -2.2291 37 1 7.6719 6.0203 -4.2924 38 1 6.1501 5.9080 -3.3752 39 1 6.6111 6.5760 -6.2499 40 1 4.9531 6.4644 -5.6118 41 1 4.1294 6.2313 -10.2325 42 1 4.3559 4.5482 -4.1818 43 1 4.5329 3.6412 -5.7037 44 1 6.1569 2.1305 -4.6691 45 1 4.7000 2.1891 -3.6421 46 1 4.4211 -1.2963 0.0068 47 1 0.7173 -2.6721 0.0244 48 1 3.5540 -3.1693 1.2661 49 1 2.1398 -4.3534 1.2829 50 1 2.1147 -4.3593 -1.2541 51 1 3.5283 -3.1751 -1.2717 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000927663270.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:38:06 Heat of formation + Delta-G solvation = 77.022386 kcal Electronic energy + Delta-G solvation = -30216.838853 eV Core-core repulsion = 26153.624765 eV Total energy + Delta-G solvation = -4063.214088 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.47830 -41.42747 -39.20898 -38.01559 -36.31353 -35.98160 -34.49221 -33.99336 -32.12385 -30.92366 -30.57632 -29.20827 -27.25981 -26.04055 -24.71273 -24.43090 -23.47340 -23.22236 -22.18177 -21.35514 -20.57167 -20.23490 -19.21180 -18.91037 -17.98413 -17.46217 -16.77404 -16.61963 -16.46530 -16.12465 -16.02025 -15.89373 -15.49827 -15.36516 -15.27093 -15.12407 -14.70908 -14.68516 -14.45154 -13.98830 -13.91042 -13.62465 -13.51723 -13.22684 -13.14508 -12.92280 -12.63887 -12.52817 -12.38655 -12.35423 -12.23407 -11.98968 -11.93483 -11.84403 -11.79449 -11.42019 -11.32496 -11.27881 -10.77662 -10.32029 -10.10847 -9.63407 -9.48877 -9.06504 -8.28163 -6.30926 0.66209 1.27138 1.34951 1.36007 1.45893 1.49092 1.88813 2.06605 2.33947 2.89483 3.04149 3.04848 3.13655 3.30125 3.48078 3.76459 3.91686 3.96381 4.03372 4.09317 4.10254 4.16345 4.23478 4.30923 4.37464 4.39590 4.46132 4.53490 4.61021 4.63898 4.72835 4.75276 4.80395 4.83249 4.84492 4.93822 4.96227 5.00410 5.04902 5.11722 5.27278 5.28106 5.33462 5.39600 5.51556 5.52318 5.81575 5.99194 6.02130 6.28158 6.59310 6.62495 6.74943 6.84153 7.32577 7.44826 8.87773 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.012679 B = 0.002174 C = 0.002008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2207.908687 B =12878.601618 C =13943.266162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.370 5.370 3 N -0.314 5.314 4 C 0.050 3.950 5 C 0.229 3.771 6 N -0.732 5.732 7 C 0.711 3.289 8 O -0.626 6.626 9 N -0.627 5.627 10 C 0.143 3.857 11 C 0.040 3.960 12 N -0.536 5.536 13 C 0.171 3.829 14 C -0.513 4.513 15 H 0.046 0.954 16 C 0.011 3.989 17 N -0.945 5.945 18 Si 0.942 3.058 19 H -0.264 1.264 20 H -0.283 1.283 21 H -0.257 1.257 22 C 0.053 3.947 23 C 0.129 3.871 24 C -0.269 4.269 25 C 0.123 3.877 26 C -0.119 4.119 27 C -0.152 4.152 28 C -0.157 4.157 29 H 0.089 0.911 30 H 0.088 0.912 31 H 0.114 0.886 32 H 0.095 0.905 33 H 0.066 0.934 34 H 0.404 0.596 35 H 0.081 0.919 36 H 0.094 0.906 37 H 0.095 0.905 38 H 0.022 0.978 39 H 0.032 0.968 40 H -0.017 1.017 41 H 0.266 0.734 42 H 0.019 0.981 43 H 0.078 0.922 44 H 0.084 0.916 45 H 0.096 0.904 46 H 0.159 0.841 47 H 0.134 0.866 48 H 0.097 0.903 49 H 0.120 0.880 50 H 0.118 0.882 51 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.838 -19.120 22.730 30.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.153 5.153 3 N -0.138 5.138 4 C -0.115 4.115 5 C 0.103 3.897 6 N -0.390 5.390 7 C 0.412 3.588 8 O -0.508 6.508 9 N -0.364 5.364 10 C 0.020 3.980 11 C -0.089 4.089 12 N -0.261 5.261 13 C 0.044 3.956 14 C -0.551 4.551 15 H 0.064 0.936 16 C -0.187 4.187 17 N -0.585 5.585 18 Si 0.766 3.234 19 H -0.189 1.189 20 H -0.209 1.209 21 H -0.181 1.181 22 C -0.076 4.076 23 C 0.006 3.994 24 C -0.298 4.298 25 C -0.005 4.005 26 C -0.139 4.139 27 C -0.189 4.189 28 C -0.194 4.194 29 H 0.107 0.893 30 H 0.107 0.893 31 H 0.132 0.868 32 H 0.113 0.887 33 H 0.084 0.916 34 H 0.241 0.759 35 H 0.099 0.901 36 H 0.112 0.888 37 H 0.113 0.887 38 H 0.040 0.960 39 H 0.050 0.950 40 H 0.000 1.000 41 H 0.075 0.925 42 H 0.037 0.963 43 H 0.096 0.904 44 H 0.102 0.898 45 H 0.114 0.886 46 H 0.177 0.823 47 H 0.152 0.848 48 H 0.115 0.885 49 H 0.138 0.862 50 H 0.136 0.864 51 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -7.018 -18.083 22.993 30.082 hybrid contribution -0.656 0.860 -0.453 1.172 sum -7.673 -17.224 22.541 29.387 Atomic orbital electron populations 1.22214 0.72245 1.05886 1.04755 1.48723 1.07728 1.02680 1.56122 1.77346 1.01981 1.09104 1.25366 1.22093 0.92671 0.94541 1.02155 1.19245 0.91732 0.96339 0.82356 1.45114 1.31049 1.53328 1.09541 1.15808 0.81273 0.79114 0.82587 1.90862 1.50688 1.64447 1.44754 1.47393 1.36341 1.47320 1.05325 1.21543 0.88446 0.88371 0.99639 1.22558 0.98837 0.96693 0.90798 1.61812 1.27416 1.22022 1.14814 1.19957 0.94125 0.90116 0.91435 1.21213 1.41498 0.94570 0.97803 0.93597 1.25767 0.94599 1.03665 0.94662 1.70033 1.45198 1.37270 1.06037 0.85787 0.78503 0.80042 0.79024 1.18902 1.20884 1.18072 1.22303 0.91980 0.94557 0.98783 1.21757 0.95048 0.95534 0.87110 1.21221 0.97368 0.93505 1.17744 1.20627 0.90447 0.89879 0.99575 1.20610 0.99571 0.83824 1.09922 1.23175 1.01295 0.99702 0.94763 1.23173 1.01538 0.99818 0.94896 0.89253 0.89327 0.86766 0.88722 0.91561 0.75868 0.90113 0.88792 0.88653 0.96009 0.94950 0.99956 0.92451 0.96272 0.90373 0.89820 0.88649 0.82295 0.84800 0.88482 0.86177 0.86351 0.88702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.89 11.21 127.77 1.43 2.32 16 2 N -0.37 -6.85 4.01 -356.03 -1.43 -8.27 16 3 N -0.31 -7.78 12.57 -47.38 -0.60 -8.38 16 4 C 0.05 1.13 6.59 43.11 0.28 1.42 16 5 C 0.23 5.38 6.24 85.63 0.53 5.91 16 6 N -0.73 -18.58 5.46 -482.28 -2.63 -21.21 16 7 C 0.71 22.05 8.31 179.05 1.49 23.53 16 8 O -0.63 -23.07 15.83 -3.98 -0.06 -23.13 16 9 N -0.63 -18.88 3.01 -835.96 -2.52 -21.40 16 10 C 0.14 4.28 6.58 86.35 0.57 4.85 16 11 C 0.04 1.34 5.62 86.38 0.49 1.82 16 12 N -0.54 -21.62 4.62 -899.83 -4.16 -25.78 16 13 C 0.17 8.08 3.79 85.56 0.32 8.40 16 14 C -0.51 -28.87 8.96 25.60 0.23 -28.64 16 15 H 0.05 2.84 7.37 -2.91 -0.02 2.82 16 16 C 0.01 0.61 5.47 84.65 0.46 1.08 16 17 N -0.94 -58.05 13.96 21.45 0.30 -57.75 16 18 Si 0.94 43.81 27.47 68.60 1.88 45.69 16 19 H -0.26 -11.77 7.11 99.48 0.71 -11.06 16 20 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 21 H -0.26 -11.35 6.54 99.48 0.65 -10.70 16 22 C 0.05 1.95 5.46 86.38 0.47 2.42 16 23 C 0.13 3.68 6.60 86.35 0.57 4.25 16 24 C -0.27 -4.97 9.74 21.99 0.21 -4.76 16 25 C 0.12 1.99 6.62 41.41 0.27 2.26 16 26 C -0.12 -1.09 5.96 -11.54 -0.07 -1.16 16 27 C -0.15 -1.03 10.05 30.62 0.31 -0.72 16 28 C -0.16 -1.18 10.05 30.62 0.31 -0.87 16 29 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 30 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 31 H 0.11 0.49 7.23 -2.39 -0.02 0.47 16 32 H 0.09 2.06 8.14 -2.38 -0.02 2.04 16 33 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 34 H 0.40 9.31 5.96 -92.71 -0.55 8.76 16 35 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 36 H 0.09 2.78 7.11 -2.39 -0.02 2.76 16 37 H 0.10 2.92 7.99 -2.39 -0.02 2.90 16 38 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 39 H 0.03 1.50 7.40 -2.39 -0.02 1.48 16 40 H -0.02 -0.83 7.17 -2.38 -0.02 -0.85 16 41 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16 42 H 0.02 0.72 8.14 -2.38 -0.02 0.70 16 43 H 0.08 3.24 6.67 -2.39 -0.02 3.23 16 44 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 45 H 0.10 2.24 5.63 -2.38 -0.01 2.22 16 46 H 0.16 2.40 8.06 -2.91 -0.02 2.38 16 47 H 0.13 0.69 7.26 -2.39 -0.02 0.68 16 48 H 0.10 0.79 7.93 -2.39 -0.02 0.77 16 49 H 0.12 0.40 8.14 -2.39 -0.02 0.38 16 50 H 0.12 0.53 8.14 -2.39 -0.02 0.51 16 51 H 0.09 0.90 7.96 -2.39 -0.02 0.88 16 Total: -1.00 -75.84 408.40 -1.00 -76.84 By element: Atomic # 1 Polarization: 20.96 SS G_CDS: 0.33 Total: 21.29 kcal Atomic # 6 Polarization: 14.23 SS G_CDS: 7.88 Total: 22.11 kcal Atomic # 7 Polarization: -131.77 SS G_CDS: -11.03 Total: -142.80 kcal Atomic # 8 Polarization: -23.07 SS G_CDS: -0.06 Total: -23.13 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 1.88 Total: 45.69 kcal Total: -75.84 -1.00 -76.84 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000927663270.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.860 kcal (2) G-P(sol) polarization free energy of solvation -75.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.838 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds