Wall clock time and date at job start Wed Apr 1 2020 05:38:06
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46498 * 1
3 3 N 1.40084 * 126.04015 * 2 1
4 4 C 1.30827 * 108.20999 * 180.17180 * 3 2 1
5 5 C 1.50704 * 125.90174 * 179.85213 * 4 3 2
6 6 N 1.46500 * 109.47102 * 274.69189 * 5 4 3
7 7 C 1.34777 * 119.99655 * 179.97438 * 6 5 4
8 8 O 1.21585 * 120.00078 * 5.08351 * 7 6 5
9 9 N 1.34777 * 119.99639 * 185.08598 * 7 6 5
10 10 C 1.47081 * 120.87929 * 175.00697 * 9 7 6
11 11 C 1.53232 * 108.51969 * 231.20311 * 10 9 7
12 12 N 1.46903 * 109.34170 * 306.16911 * 11 10 9
13 13 C 1.46898 * 111.00325 * 187.25544 * 12 11 10
14 14 C 1.50699 * 109.47455 * 170.00034 * 13 12 11
15 15 H 1.08003 * 119.99363 * 0.02562 * 14 13 12
16 16 C 1.37871 * 120.00158 * 179.72133 * 14 13 12
17 17 N 1.31516 * 119.99922 * 180.27360 * 16 14 13
18 18 Si 1.86803 * 120.00118 * 0.27662 * 16 14 13
19 19 H 1.48498 * 109.47010 * 89.99902 * 18 16 14
20 20 H 1.48497 * 109.47271 * 209.99859 * 18 16 14
21 21 H 1.48503 * 109.47050 * 329.99918 * 18 16 14
22 22 C 1.46897 * 111.26780 * 63.10294 * 12 11 10
23 23 C 1.47078 * 120.88358 * 355.02107 * 9 7 6
24 24 C 1.39874 * 108.20254 * 359.58865 * 4 3 2
25 25 C 1.34950 * 126.03776 * 179.71495 * 2 1 3
26 26 C 1.50703 * 126.12896 * 359.96097 * 25 2 1
27 27 C 1.52995 * 117.50060 * 213.76686 * 26 25 2
28 28 C 1.52995 * 117.49713 * 145.10247 * 26 25 2
29 29 H 1.09000 * 109.46960 * 270.28735 * 1 2 3
30 30 H 1.08997 * 109.47044 * 30.28620 * 1 2 3
31 31 H 1.09003 * 109.47158 * 150.28738 * 1 2 3
32 32 H 1.09006 * 109.47081 * 154.69028 * 5 4 3
33 33 H 1.09003 * 109.47009 * 34.69379 * 5 4 3
34 34 H 0.96995 * 119.99868 * 0.02562 * 6 5 4
35 35 H 1.08999 * 109.62946 * 111.49200 * 10 9 7
36 36 H 1.09000 * 109.78911 * 351.00348 * 10 9 7
37 37 H 1.09000 * 109.49603 * 186.21085 * 11 10 9
38 38 H 1.09000 * 109.49541 * 66.12851 * 11 10 9
39 39 H 1.08999 * 109.47130 * 49.99654 * 13 12 11
40 40 H 1.09004 * 109.46764 * 290.00230 * 13 12 11
41 41 H 0.97002 * 119.99400 * 179.97438 * 17 16 14
42 42 H 1.09004 * 109.49209 * 56.85538 * 22 12 11
43 43 H 1.09001 * 109.49155 * 176.93457 * 22 12 11
44 44 H 1.08992 * 109.62939 * 248.50761 * 23 9 7
45 45 H 1.09005 * 109.62604 * 9.09078 * 23 9 7
46 46 H 1.08002 * 126.04245 * 180.28275 * 24 4 3
47 47 H 1.09003 * 115.54513 * 359.44001 * 26 25 2
48 48 H 1.09002 * 117.49757 * 359.97438 * 27 26 25
49 49 H 1.09000 * 117.49865 * 145.01941 * 27 26 25
50 50 H 1.09000 * 117.49897 * 214.98021 * 28 26 25
51 51 H 1.09001 * 117.50441 * 359.97438 * 28 26 25
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 7 2.2892 1.1327 0.0000
4 6 3.5346 0.7321 -0.0037
5 6 4.7497 1.6237 -0.0083
6 7 5.0721 2.0027 -1.3861
7 6 6.1275 2.8030 -1.6354
8 8 6.8660 3.1353 -0.7286
9 7 6.3640 3.2351 -2.8900
10 6 7.4435 4.1950 -3.1669
11 6 6.8654 5.3551 -3.9841
12 7 6.1878 4.8222 -5.1736
13 6 5.7693 5.9069 -6.0715
14 6 5.3046 5.3240 -7.3811
15 1 5.3183 4.2545 -7.5312
16 6 4.8560 6.1554 -8.3853
17 7 4.4453 5.6463 -9.5262
18 14 4.8315 8.0051 -8.1252
19 1 6.1266 8.5839 -8.5644
20 1 3.7279 8.6021 -8.9194
21 1 4.6206 8.2998 -6.6851
22 6 5.0459 3.9761 -4.8022
23 6 5.5494 2.7594 -4.0184
24 6 3.5437 -0.6665 0.0033
25 6 2.2589 -1.0912 0.0054
26 6 1.7974 -2.5258 0.0134
27 6 2.6554 -3.5398 0.7727
28 6 2.6402 -3.5433 -0.7580
29 1 -0.3633 0.0052 1.0277
30 1 -0.3633 0.8874 -0.5183
31 1 -0.3633 -0.8926 -0.5094
32 1 5.5936 1.0898 0.4288
33 1 4.5446 2.5203 0.5767
34 1 4.5257 1.6782 -2.1189
35 1 8.2330 3.7040 -3.7357
36 1 7.8495 4.5743 -2.2291
37 1 7.6719 6.0203 -4.2924
38 1 6.1501 5.9080 -3.3752
39 1 6.6111 6.5760 -6.2499
40 1 4.9531 6.4644 -5.6118
41 1 4.1294 6.2313 -10.2325
42 1 4.3559 4.5482 -4.1818
43 1 4.5329 3.6412 -5.7037
44 1 6.1569 2.1305 -4.6691
45 1 4.7000 2.1891 -3.6421
46 1 4.4211 -1.2963 0.0068
47 1 0.7173 -2.6721 0.0244
48 1 3.5540 -3.1693 1.2661
49 1 2.1398 -4.3534 1.2829
50 1 2.1147 -4.3593 -1.2541
51 1 3.5283 -3.1751 -1.2717
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000927663270.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:38:06
Heat of formation + Delta-G solvation = 77.022386 kcal
Electronic energy + Delta-G solvation = -30216.838853 eV
Core-core repulsion = 26153.624765 eV
Total energy + Delta-G solvation = -4063.214088 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.206 amu
Computer time = 0.98 seconds
Orbital eigenvalues (eV)
-42.47830 -41.42747 -39.20898 -38.01559 -36.31353 -35.98160 -34.49221 -33.99336
-32.12385 -30.92366 -30.57632 -29.20827 -27.25981 -26.04055 -24.71273 -24.43090
-23.47340 -23.22236 -22.18177 -21.35514 -20.57167 -20.23490 -19.21180 -18.91037
-17.98413 -17.46217 -16.77404 -16.61963 -16.46530 -16.12465 -16.02025 -15.89373
-15.49827 -15.36516 -15.27093 -15.12407 -14.70908 -14.68516 -14.45154 -13.98830
-13.91042 -13.62465 -13.51723 -13.22684 -13.14508 -12.92280 -12.63887 -12.52817
-12.38655 -12.35423 -12.23407 -11.98968 -11.93483 -11.84403 -11.79449 -11.42019
-11.32496 -11.27881 -10.77662 -10.32029 -10.10847 -9.63407 -9.48877 -9.06504
-8.28163 -6.30926 0.66209 1.27138 1.34951 1.36007 1.45893 1.49092
1.88813 2.06605 2.33947 2.89483 3.04149 3.04848 3.13655 3.30125
3.48078 3.76459 3.91686 3.96381 4.03372 4.09317 4.10254 4.16345
4.23478 4.30923 4.37464 4.39590 4.46132 4.53490 4.61021 4.63898
4.72835 4.75276 4.80395 4.83249 4.84492 4.93822 4.96227 5.00410
5.04902 5.11722 5.27278 5.28106 5.33462 5.39600 5.51556 5.52318
5.81575 5.99194 6.02130 6.28158 6.59310 6.62495 6.74943 6.84153
7.32577 7.44826 8.87773
Molecular weight = 347.21amu
Principal moments of inertia in cm(-1)
A = 0.012679 B = 0.002174 C = 0.002008
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2207.908687 B =12878.601618 C =13943.266162
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.089 3.911
2 N -0.370 5.370
3 N -0.314 5.314
4 C 0.050 3.950
5 C 0.229 3.771
6 N -0.732 5.732
7 C 0.711 3.289
8 O -0.626 6.626
9 N -0.627 5.627
10 C 0.143 3.857
11 C 0.040 3.960
12 N -0.536 5.536
13 C 0.171 3.829
14 C -0.513 4.513
15 H 0.046 0.954
16 C 0.011 3.989
17 N -0.945 5.945
18 Si 0.942 3.058
19 H -0.264 1.264
20 H -0.283 1.283
21 H -0.257 1.257
22 C 0.053 3.947
23 C 0.129 3.871
24 C -0.269 4.269
25 C 0.123 3.877
26 C -0.119 4.119
27 C -0.152 4.152
28 C -0.157 4.157
29 H 0.089 0.911
30 H 0.088 0.912
31 H 0.114 0.886
32 H 0.095 0.905
33 H 0.066 0.934
34 H 0.404 0.596
35 H 0.081 0.919
36 H 0.094 0.906
37 H 0.095 0.905
38 H 0.022 0.978
39 H 0.032 0.968
40 H -0.017 1.017
41 H 0.266 0.734
42 H 0.019 0.981
43 H 0.078 0.922
44 H 0.084 0.916
45 H 0.096 0.904
46 H 0.159 0.841
47 H 0.134 0.866
48 H 0.097 0.903
49 H 0.120 0.880
50 H 0.118 0.882
51 H 0.094 0.906
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -6.838 -19.120 22.730 30.479
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.051 4.051
2 N -0.153 5.153
3 N -0.138 5.138
4 C -0.115 4.115
5 C 0.103 3.897
6 N -0.390 5.390
7 C 0.412 3.588
8 O -0.508 6.508
9 N -0.364 5.364
10 C 0.020 3.980
11 C -0.089 4.089
12 N -0.261 5.261
13 C 0.044 3.956
14 C -0.551 4.551
15 H 0.064 0.936
16 C -0.187 4.187
17 N -0.585 5.585
18 Si 0.766 3.234
19 H -0.189 1.189
20 H -0.209 1.209
21 H -0.181 1.181
22 C -0.076 4.076
23 C 0.006 3.994
24 C -0.298 4.298
25 C -0.005 4.005
26 C -0.139 4.139
27 C -0.189 4.189
28 C -0.194 4.194
29 H 0.107 0.893
30 H 0.107 0.893
31 H 0.132 0.868
32 H 0.113 0.887
33 H 0.084 0.916
34 H 0.241 0.759
35 H 0.099 0.901
36 H 0.112 0.888
37 H 0.113 0.887
38 H 0.040 0.960
39 H 0.050 0.950
40 H 0.000 1.000
41 H 0.075 0.925
42 H 0.037 0.963
43 H 0.096 0.904
44 H 0.102 0.898
45 H 0.114 0.886
46 H 0.177 0.823
47 H 0.152 0.848
48 H 0.115 0.885
49 H 0.138 0.862
50 H 0.136 0.864
51 H 0.113 0.887
Dipole moment (debyes) X Y Z Total
from point charges -7.018 -18.083 22.993 30.082
hybrid contribution -0.656 0.860 -0.453 1.172
sum -7.673 -17.224 22.541 29.387
Atomic orbital electron populations
1.22214 0.72245 1.05886 1.04755 1.48723 1.07728 1.02680 1.56122
1.77346 1.01981 1.09104 1.25366 1.22093 0.92671 0.94541 1.02155
1.19245 0.91732 0.96339 0.82356 1.45114 1.31049 1.53328 1.09541
1.15808 0.81273 0.79114 0.82587 1.90862 1.50688 1.64447 1.44754
1.47393 1.36341 1.47320 1.05325 1.21543 0.88446 0.88371 0.99639
1.22558 0.98837 0.96693 0.90798 1.61812 1.27416 1.22022 1.14814
1.19957 0.94125 0.90116 0.91435 1.21213 1.41498 0.94570 0.97803
0.93597 1.25767 0.94599 1.03665 0.94662 1.70033 1.45198 1.37270
1.06037 0.85787 0.78503 0.80042 0.79024 1.18902 1.20884 1.18072
1.22303 0.91980 0.94557 0.98783 1.21757 0.95048 0.95534 0.87110
1.21221 0.97368 0.93505 1.17744 1.20627 0.90447 0.89879 0.99575
1.20610 0.99571 0.83824 1.09922 1.23175 1.01295 0.99702 0.94763
1.23173 1.01538 0.99818 0.94896 0.89253 0.89327 0.86766 0.88722
0.91561 0.75868 0.90113 0.88792 0.88653 0.96009 0.94950 0.99956
0.92451 0.96272 0.90373 0.89820 0.88649 0.82295 0.84800 0.88482
0.86177 0.86351 0.88702
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.09 0.89 11.21 127.77 1.43 2.32 16
2 N -0.37 -6.85 4.01 -356.03 -1.43 -8.27 16
3 N -0.31 -7.78 12.57 -47.38 -0.60 -8.38 16
4 C 0.05 1.13 6.59 43.11 0.28 1.42 16
5 C 0.23 5.38 6.24 85.63 0.53 5.91 16
6 N -0.73 -18.58 5.46 -482.28 -2.63 -21.21 16
7 C 0.71 22.05 8.31 179.05 1.49 23.53 16
8 O -0.63 -23.07 15.83 -3.98 -0.06 -23.13 16
9 N -0.63 -18.88 3.01 -835.96 -2.52 -21.40 16
10 C 0.14 4.28 6.58 86.35 0.57 4.85 16
11 C 0.04 1.34 5.62 86.38 0.49 1.82 16
12 N -0.54 -21.62 4.62 -899.83 -4.16 -25.78 16
13 C 0.17 8.08 3.79 85.56 0.32 8.40 16
14 C -0.51 -28.87 8.96 25.60 0.23 -28.64 16
15 H 0.05 2.84 7.37 -2.91 -0.02 2.82 16
16 C 0.01 0.61 5.47 84.65 0.46 1.08 16
17 N -0.94 -58.05 13.96 21.45 0.30 -57.75 16
18 Si 0.94 43.81 27.47 68.60 1.88 45.69 16
19 H -0.26 -11.77 7.11 99.48 0.71 -11.06 16
20 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16
21 H -0.26 -11.35 6.54 99.48 0.65 -10.70 16
22 C 0.05 1.95 5.46 86.38 0.47 2.42 16
23 C 0.13 3.68 6.60 86.35 0.57 4.25 16
24 C -0.27 -4.97 9.74 21.99 0.21 -4.76 16
25 C 0.12 1.99 6.62 41.41 0.27 2.26 16
26 C -0.12 -1.09 5.96 -11.54 -0.07 -1.16 16
27 C -0.15 -1.03 10.05 30.62 0.31 -0.72 16
28 C -0.16 -1.18 10.05 30.62 0.31 -0.87 16
29 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16
30 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16
31 H 0.11 0.49 7.23 -2.39 -0.02 0.47 16
32 H 0.09 2.06 8.14 -2.38 -0.02 2.04 16
33 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16
34 H 0.40 9.31 5.96 -92.71 -0.55 8.76 16
35 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16
36 H 0.09 2.78 7.11 -2.39 -0.02 2.76 16
37 H 0.10 2.92 7.99 -2.39 -0.02 2.90 16
38 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16
39 H 0.03 1.50 7.40 -2.39 -0.02 1.48 16
40 H -0.02 -0.83 7.17 -2.38 -0.02 -0.85 16
41 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16
42 H 0.02 0.72 8.14 -2.38 -0.02 0.70 16
43 H 0.08 3.24 6.67 -2.39 -0.02 3.23 16
44 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16
45 H 0.10 2.24 5.63 -2.38 -0.01 2.22 16
46 H 0.16 2.40 8.06 -2.91 -0.02 2.38 16
47 H 0.13 0.69 7.26 -2.39 -0.02 0.68 16
48 H 0.10 0.79 7.93 -2.39 -0.02 0.77 16
49 H 0.12 0.40 8.14 -2.39 -0.02 0.38 16
50 H 0.12 0.53 8.14 -2.39 -0.02 0.51 16
51 H 0.09 0.90 7.96 -2.39 -0.02 0.88 16
Total: -1.00 -75.84 408.40 -1.00 -76.84
By element:
Atomic # 1 Polarization: 20.96 SS G_CDS: 0.33 Total: 21.29 kcal
Atomic # 6 Polarization: 14.23 SS G_CDS: 7.88 Total: 22.11 kcal
Atomic # 7 Polarization: -131.77 SS G_CDS: -11.03 Total: -142.80 kcal
Atomic # 8 Polarization: -23.07 SS G_CDS: -0.06 Total: -23.13 kcal
Atomic # 14 Polarization: 43.81 SS G_CDS: 1.88 Total: 45.69 kcal
Total: -75.84 -1.00 -76.84 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000927663270.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 153.860 kcal
(2) G-P(sol) polarization free energy of solvation -75.838 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.022 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.999 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.838 kcal
(6) G-S(sol) free energy of system = (1) + (5) 77.022 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.99 seconds