Wall clock time and date at job start Wed Apr 1 2020 05:01:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46504 * 109.47268 * 2 1 4 4 N 1.28520 * 124.43981 * 89.97292 * 3 2 1 5 5 C 1.31133 * 109.05945 * 180.02562 * 4 3 2 6 6 C 1.40932 * 105.77250 * 0.02562 * 5 4 3 7 7 C 1.47803 * 127.23344 * 179.97438 * 6 5 4 8 8 O 1.21555 * 120.00170 * 6.50093 * 7 6 5 9 9 N 1.34780 * 119.99718 * 186.23024 * 7 6 5 10 10 C 1.46934 * 120.64294 * 354.78113 * 9 7 6 11 11 C 1.53617 * 108.53291 * 126.32838 * 10 9 7 12 12 C 1.53040 * 109.26162 * 54.87378 * 11 10 9 13 13 C 1.53026 * 109.44659 * 58.56799 * 12 11 10 14 14 C 1.53188 * 109.34204 * 181.23330 * 13 12 11 15 15 N 1.46929 * 108.78083 * 305.37685 * 14 13 12 16 16 C 1.36932 * 120.64410 * 233.61814 * 15 14 13 17 17 H 1.08004 * 120.00090 * 35.83510 * 16 15 14 18 18 C 1.38813 * 120.00293 * 215.84790 * 16 15 14 19 19 N 1.31625 * 119.99482 * 356.64825 * 18 16 15 20 20 Si 1.86796 * 120.00412 * 176.65178 * 18 16 15 21 21 H 1.48504 * 109.47135 * 89.99560 * 20 18 16 22 22 H 1.48500 * 109.47397 * 209.99791 * 20 18 16 23 23 H 1.48499 * 109.46997 * 329.99764 * 20 18 16 24 24 C 1.46929 * 118.71781 * 53.63159 * 15 14 13 25 25 C 1.53047 * 109.39457 * 178.59735 * 12 11 10 26 26 C 1.53034 * 109.54459 * 298.55693 * 12 11 10 27 27 C 1.46926 * 120.64386 * 175.06907 * 9 7 6 28 28 N 1.28591 * 124.44684 * 270.29424 * 3 2 1 29 29 H 1.09000 * 109.47303 * 59.99745 * 1 2 3 30 30 H 1.09000 * 109.46621 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.46717 * 299.99381 * 1 2 3 32 32 H 1.09005 * 109.47265 * 240.00087 * 2 1 3 33 33 H 1.09000 * 109.47303 * 120.00255 * 2 1 3 34 34 H 1.08001 * 127.11420 * 180.02562 * 5 4 3 35 35 H 1.08999 * 109.58797 * 246.16230 * 10 9 7 36 36 H 1.09006 * 109.58609 * 6.59534 * 10 9 7 37 37 H 1.08996 * 109.63802 * 294.87103 * 11 10 9 38 38 H 1.09001 * 109.42706 * 174.74100 * 11 10 9 39 39 H 1.09004 * 109.49110 * 301.19462 * 13 12 11 40 40 H 1.09003 * 109.49137 * 61.26946 * 13 12 11 41 41 H 1.08994 * 109.58624 * 185.58677 * 14 13 12 42 42 H 1.08999 * 109.70041 * 65.23116 * 14 13 12 43 43 H 0.97000 * 119.99286 * 180.02562 * 19 18 16 44 44 H 1.08991 * 109.58786 * 186.57196 * 24 15 14 45 45 H 1.09003 * 109.69985 * 66.21245 * 24 15 14 46 46 H 1.09000 * 109.49326 * 298.68891 * 25 12 11 47 47 H 1.09003 * 109.49537 * 58.76789 * 25 12 11 48 48 H 1.09000 * 109.49274 * 301.34177 * 26 12 11 49 49 H 1.09003 * 109.49250 * 181.26381 * 26 12 11 50 50 H 1.09004 * 109.58648 * 353.40615 * 27 9 7 51 51 H 1.09003 * 109.58821 * 113.67806 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 7 2.2602 2.0667 1.0599 5 6 2.6813 3.2588 0.7121 6 6 2.6843 3.2680 -0.6972 7 6 3.0776 4.3836 -1.5834 8 8 3.5606 5.3940 -1.1108 9 7 2.9059 4.2782 -2.9160 10 6 2.4362 3.0207 -3.5135 11 6 1.2049 3.3223 -4.3811 12 6 1.5590 4.4077 -5.4003 13 6 2.7285 3.9324 -6.2651 14 6 3.1010 5.0326 -7.2638 15 7 1.9011 5.4067 -8.0248 16 6 1.9109 5.3946 -9.3940 17 1 2.4729 4.6392 -9.9233 18 6 1.1990 6.3532 -10.1018 19 7 0.4614 7.2333 -9.4584 20 14 1.2874 6.3941 -11.9672 21 1 0.2140 5.5376 -12.5326 22 1 1.1079 7.7900 -12.4409 23 1 2.6106 5.8869 -12.4113 24 6 0.6904 5.7945 -7.2881 25 6 0.3446 4.6857 -6.2893 26 6 1.9565 5.6898 -4.6654 27 6 3.1906 5.4167 -3.8001 28 7 2.2557 2.0688 -1.0604 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3632 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8901 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 2.9669 4.0666 1.3697 35 1 3.2257 2.5922 -4.1309 36 1 2.1657 2.3196 -2.7239 37 1 0.3876 3.6695 -3.7491 38 1 0.9002 2.4165 -4.9055 39 1 3.5860 3.7133 -5.6287 40 1 2.4380 3.0324 -6.8070 41 1 3.8660 4.6628 -7.9464 42 1 3.4796 5.9028 -6.7276 43 1 -0.0364 7.9029 -9.9531 44 1 -0.1355 5.9275 -7.9868 45 1 0.8692 6.7265 -6.7519 46 1 0.0753 3.7790 -6.8311 47 1 -0.4946 5.0026 -5.6701 48 1 1.1323 6.0158 -4.0310 49 1 2.1868 6.4690 -5.3921 50 1 3.4182 6.2976 -3.1998 51 1 4.0419 5.1798 -4.4384 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000957544376.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:01:31 Heat of formation + Delta-G solvation = 107.717224 kcal Electronic energy + Delta-G solvation = -32078.649034 eV Core-core repulsion = 28016.765974 eV Total energy + Delta-G solvation = -4061.883060 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -43.95378 -40.38078 -38.60828 -35.90765 -35.25549 -33.69377 -32.88567 -31.30335 -31.11284 -30.40086 -29.90398 -27.98183 -25.70963 -24.87709 -24.26529 -23.21951 -22.73167 -22.00560 -21.64358 -20.67684 -19.61318 -17.83989 -17.71600 -17.11018 -16.91454 -16.39691 -15.89576 -15.37471 -15.12742 -14.81242 -14.64805 -14.25739 -14.11005 -13.92544 -13.67743 -13.45305 -13.27241 -13.21105 -12.89446 -12.73122 -12.64120 -12.41110 -12.09838 -11.93352 -11.56777 -11.39372 -11.32567 -11.13294 -10.91704 -10.78390 -10.77661 -10.68321 -10.46616 -10.32144 -10.19647 -10.03759 -9.93308 -9.72295 -9.54497 -9.41239 -9.31904 -8.45691 -8.39579 -6.47430 -5.75305 -3.28149 1.06548 1.71142 1.78633 2.94041 3.16164 3.37551 3.44589 3.46093 3.62812 4.26799 4.29551 4.50058 4.55738 4.57764 4.75292 4.95851 5.10032 5.12578 5.14611 5.15986 5.34456 5.38110 5.42240 5.49106 5.50705 5.53539 5.56393 5.72025 5.82892 5.89138 5.93921 6.04969 6.13835 6.17034 6.18337 6.29535 6.42573 6.46554 6.49176 6.64801 6.66669 6.75214 6.79919 6.93578 7.01023 7.07640 7.37575 7.50494 7.80763 7.83760 7.86936 8.09383 8.56905 9.28981 9.88276 10.48708 11.30485 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.022010 B = 0.002491 C = 0.002353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1271.842427 B =11239.137618 C =11897.199484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.131 3.869 3 N -0.145 5.145 4 N -0.289 5.289 5 C 0.032 3.968 6 C -0.035 4.035 7 C 0.603 3.397 8 O -0.535 6.535 9 N -0.587 5.587 10 C 0.074 3.926 11 C -0.119 4.119 12 C -0.047 4.047 13 C -0.125 4.125 14 C 0.145 3.855 15 N -0.592 5.592 16 C -0.252 4.252 17 H 0.061 0.939 18 C 0.008 3.992 19 N -0.904 5.904 20 Si 0.901 3.099 21 H -0.288 1.288 22 H -0.290 1.290 23 H -0.279 1.279 24 C 0.168 3.832 25 C -0.130 4.130 26 C -0.123 4.123 27 C 0.112 3.888 28 N -0.248 5.248 29 H 0.070 0.930 30 H 0.088 0.912 31 H 0.068 0.932 32 H 0.112 0.888 33 H 0.111 0.889 34 H 0.207 0.793 35 H 0.069 0.931 36 H 0.128 0.872 37 H 0.058 0.942 38 H 0.069 0.931 39 H 0.050 0.950 40 H 0.056 0.944 41 H 0.049 0.951 42 H 0.019 0.981 43 H 0.254 0.746 44 H 0.094 0.906 45 H 0.017 0.983 46 H 0.052 0.948 47 H 0.044 0.956 48 H 0.058 0.942 49 H 0.091 0.909 50 H 0.088 0.912 51 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.179 -14.506 19.848 24.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.012 3.988 3 N -0.047 5.047 4 N -0.128 5.128 5 C -0.151 4.151 6 C -0.198 4.198 7 C 0.388 3.612 8 O -0.411 6.411 9 N -0.319 5.319 10 C -0.049 4.049 11 C -0.158 4.158 12 C -0.048 4.048 13 C -0.164 4.164 14 C 0.019 3.981 15 N -0.315 5.315 16 C -0.382 4.382 17 H 0.079 0.921 18 C -0.190 4.190 19 N -0.549 5.549 20 Si 0.731 3.269 21 H -0.215 1.215 22 H -0.216 1.216 23 H -0.205 1.205 24 C 0.043 3.957 25 C -0.170 4.170 26 C -0.161 4.161 27 C -0.009 4.009 28 N -0.095 5.095 29 H 0.089 0.911 30 H 0.107 0.893 31 H 0.087 0.913 32 H 0.130 0.870 33 H 0.129 0.871 34 H 0.224 0.776 35 H 0.087 0.913 36 H 0.144 0.856 37 H 0.077 0.923 38 H 0.088 0.912 39 H 0.069 0.931 40 H 0.075 0.925 41 H 0.067 0.933 42 H 0.037 0.963 43 H 0.064 0.936 44 H 0.112 0.888 45 H 0.035 0.965 46 H 0.071 0.929 47 H 0.062 0.938 48 H 0.077 0.923 49 H 0.110 0.890 50 H 0.107 0.893 51 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 0.894 -15.105 20.016 25.092 hybrid contribution 0.177 0.826 -1.073 1.366 sum 1.071 -14.279 18.943 23.746 Atomic orbital electron populations 1.22202 0.92757 1.04167 1.03949 1.22130 0.96346 0.74182 1.06165 1.48521 1.43379 1.13386 0.99407 1.73991 1.17586 1.05558 1.15688 1.24813 1.01430 0.95213 0.93613 1.23185 1.08239 0.93510 0.94837 1.16769 0.78598 0.84511 0.81356 1.90795 1.45107 1.30129 1.75044 1.47968 1.64222 1.14671 1.05051 1.22818 0.96898 0.85865 0.99297 1.22048 0.96836 0.99589 0.97300 1.20400 0.96829 0.93632 0.93911 1.22138 0.96536 1.00018 0.97676 1.20939 0.90350 0.94020 0.92826 1.43954 1.06315 1.79341 1.01925 1.19132 1.29417 1.07975 0.81636 0.92102 1.25321 0.99933 0.95740 0.98026 1.69908 1.31753 1.19165 1.34027 0.86314 0.77910 0.76874 0.85793 1.21509 1.21593 1.20457 1.20928 0.91349 0.91142 0.92315 1.22264 0.95079 1.01712 0.97921 1.22031 0.96704 0.99001 0.98372 1.21797 0.98456 0.88587 0.92091 1.74123 1.16014 1.04894 1.14499 0.91109 0.89349 0.91322 0.87001 0.87087 0.77588 0.91278 0.85556 0.92326 0.91218 0.93149 0.92547 0.93273 0.96336 0.93606 0.88774 0.96496 0.92931 0.93763 0.92325 0.89032 0.89337 0.90788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.75 10.24 37.16 0.38 -0.37 16 2 C 0.13 0.64 7.24 -4.04 -0.03 0.61 16 3 N -0.14 -1.36 3.94 -10.61 -0.04 -1.40 16 4 N -0.29 -3.03 12.01 30.90 0.37 -2.66 16 5 C 0.03 0.36 12.05 -16.83 -0.20 0.15 16 6 C -0.04 -0.44 6.95 -82.68 -0.57 -1.02 16 7 C 0.60 8.81 7.70 -12.35 -0.10 8.71 16 8 O -0.54 -9.06 16.39 5.32 0.09 -8.97 16 9 N -0.59 -8.20 2.97 -173.63 -0.51 -8.72 16 10 C 0.07 0.93 5.89 -3.49 -0.02 0.91 16 11 C -0.12 -1.60 4.92 -26.39 -0.13 -1.73 16 12 C -0.05 -0.76 0.51 -154.43 -0.08 -0.84 16 13 C -0.12 -2.08 4.15 -26.62 -0.11 -2.19 16 14 C 0.15 2.96 6.04 -3.71 -0.02 2.93 16 15 N -0.59 -14.52 3.00 -172.32 -0.52 -15.04 16 16 C -0.25 -6.84 9.55 -15.06 -0.14 -6.98 16 17 H 0.06 1.64 7.83 -52.48 -0.41 1.23 16 18 C 0.01 0.23 5.30 -17.43 -0.09 0.14 16 19 N -0.90 -25.91 10.68 55.49 0.59 -25.32 16 20 Si 0.90 21.57 29.55 -169.99 -5.02 16.55 16 21 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 22 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 23 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 24 C 0.17 3.93 4.78 -3.71 -0.02 3.91 16 25 C -0.13 -2.45 4.90 -26.61 -0.13 -2.58 16 26 C -0.12 -1.96 4.15 -26.62 -0.11 -2.07 16 27 C 0.11 1.64 5.94 -3.72 -0.02 1.61 16 28 N -0.25 -2.76 8.51 33.42 0.28 -2.48 16 29 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 30 H 0.09 0.18 8.14 -51.93 -0.42 -0.24 16 31 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.11 0.38 8.14 -51.93 -0.42 -0.05 16 33 H 0.11 0.35 8.14 -51.93 -0.42 -0.08 16 34 H 0.21 1.80 8.06 -52.49 -0.42 1.38 16 35 H 0.07 0.85 6.66 -51.93 -0.35 0.50 16 36 H 0.13 1.48 3.74 -108.48 -0.41 1.08 16 37 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 38 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 39 H 0.05 0.75 4.98 -51.93 -0.26 0.49 16 40 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 41 H 0.05 1.00 7.93 -51.93 -0.41 0.59 16 42 H 0.02 0.38 6.74 -51.93 -0.35 0.03 16 43 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 44 H 0.09 2.53 5.98 -51.93 -0.31 2.21 16 45 H 0.02 0.42 6.67 -51.93 -0.35 0.07 16 46 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 47 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 48 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 49 H 0.09 1.66 4.99 -51.93 -0.26 1.40 16 50 H 0.09 1.33 7.04 -51.93 -0.37 0.97 16 51 H 0.07 1.06 6.74 -51.93 -0.35 0.71 16 LS Contribution 383.91 15.07 5.79 5.79 Total: -1.00 -32.07 383.91 -8.40 -40.47 By element: Atomic # 1 Polarization: 8.58 SS G_CDS: -8.02 Total: 0.56 kcal Atomic # 6 Polarization: 2.61 SS G_CDS: -1.40 Total: 1.21 kcal Atomic # 7 Polarization: -55.78 SS G_CDS: 0.18 Total: -55.61 kcal Atomic # 8 Polarization: -9.06 SS G_CDS: 0.09 Total: -8.97 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -32.07 -8.40 -40.47 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000957544376.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.185 kcal (2) G-P(sol) polarization free energy of solvation -32.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 116.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.468 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds