Wall clock time and date at job start Wed Apr 1 2020 05:03:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46499 * 109.47515 * 2 1 4 4 N 1.28516 * 124.44647 * 270.03316 * 3 2 1 5 5 C 1.31139 * 109.05825 * 179.68871 * 4 3 2 6 6 C 1.40923 * 105.77510 * 0.42710 * 5 4 3 7 7 C 1.47797 * 127.23719 * 179.83762 * 6 5 4 8 8 O 1.21564 * 119.99612 * 6.22246 * 7 6 5 9 9 N 1.34777 * 120.00385 * 186.22062 * 7 6 5 10 10 C 1.46929 * 120.62766 * 354.99490 * 9 7 6 11 11 C 1.53191 * 108.77432 * 126.41333 * 10 9 7 12 12 C 1.53034 * 109.31581 * 54.63524 * 11 10 9 13 13 C 1.53043 * 109.53488 * 298.63458 * 12 11 10 14 14 H 1.09004 * 109.52282 * 301.39304 * 13 12 11 15 15 C 1.53004 * 109.49607 * 181.31959 * 13 12 11 16 16 H 1.09003 * 110.91370 * 302.60383 * 15 13 12 17 17 C 1.55150 * 111.00584 * 66.51142 * 15 13 12 18 18 C 1.54322 * 102.94184 * 153.57909 * 17 15 13 19 19 N 1.47291 * 107.30704 * 337.81247 * 18 17 15 20 20 C 1.36940 * 125.79369 * 178.92442 * 19 18 17 21 21 H 1.07993 * 119.99740 * 180.02562 * 20 19 18 22 22 C 1.38812 * 119.99937 * 0.02562 * 20 19 18 23 23 N 1.31624 * 119.99968 * 359.97438 * 22 20 19 24 24 Si 1.86797 * 119.99864 * 179.97438 * 22 20 19 25 25 H 1.48498 * 109.47275 * 59.99853 * 24 22 20 26 26 H 1.48501 * 109.47170 * 180.02562 * 24 22 20 27 27 H 1.48500 * 109.47182 * 299.99893 * 24 22 20 28 28 C 1.47425 * 108.55445 * 358.93000 * 19 18 17 29 29 C 1.46921 * 120.63278 * 175.01536 * 9 7 6 30 30 N 1.28591 * 124.44050 * 89.99932 * 3 2 1 31 31 H 1.09003 * 109.46983 * 299.99517 * 1 2 3 32 32 H 1.09005 * 109.47375 * 59.99192 * 1 2 3 33 33 H 1.08997 * 109.47250 * 179.97438 * 1 2 3 34 34 H 1.09003 * 109.46983 * 240.00483 * 2 1 3 35 35 H 1.08996 * 109.47222 * 120.00688 * 2 1 3 36 36 H 1.07997 * 127.10958 * 180.29112 * 5 4 3 37 37 H 1.08999 * 109.58461 * 246.19600 * 10 9 7 38 38 H 1.09000 * 109.58980 * 6.48038 * 10 9 7 39 39 H 1.09002 * 109.49537 * 174.58973 * 11 10 9 40 40 H 1.09006 * 109.49714 * 294.67617 * 11 10 9 41 41 H 1.09002 * 109.46262 * 178.61470 * 12 11 10 42 42 H 1.08997 * 109.46340 * 58.65296 * 12 11 10 43 43 H 1.09005 * 110.72088 * 271.93553 * 17 15 13 44 44 H 1.08992 * 110.72166 * 35.21108 * 17 15 13 45 45 H 1.09002 * 109.88683 * 97.22536 * 18 17 15 46 46 H 1.09003 * 109.88520 * 218.23408 * 18 17 15 47 47 H 0.96997 * 119.99621 * 179.97438 * 23 22 20 48 48 H 1.09000 * 110.36523 * 265.25509 * 28 19 18 49 49 H 1.08998 * 110.36591 * 143.04819 * 28 19 18 50 50 H 1.08998 * 109.59025 * 113.79951 * 29 9 7 51 51 H 1.09000 * 109.58732 * 353.36992 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 7 2.2602 2.0667 -1.0598 5 6 2.6756 3.2609 -0.7118 6 6 2.6849 3.2677 0.6973 7 6 3.0791 4.3828 1.5837 8 8 3.3369 5.4728 1.1112 9 7 3.1527 4.1913 2.9158 10 6 2.7396 2.9136 3.5122 11 6 3.8865 2.3789 4.3757 12 6 4.2929 3.4460 5.3946 13 6 4.7838 4.6952 4.6592 14 1 5.6282 4.4340 4.0213 15 6 5.2209 5.7491 5.6786 16 1 4.4048 5.9952 6.3581 17 6 6.4744 5.2786 6.4624 18 6 7.1422 6.6070 6.8759 19 7 6.6631 7.6457 5.9481 20 6 7.0025 8.9719 5.9860 21 1 6.5937 9.6549 5.2562 22 6 7.8719 9.4381 6.9626 23 7 8.3697 8.6056 7.8523 24 14 8.3355 11.2469 7.0139 25 1 7.1115 12.0664 7.2023 26 1 9.2708 11.4864 8.1421 27 1 8.9931 11.6258 5.7375 28 6 5.7554 7.0187 4.9701 29 6 3.6471 5.2562 3.7990 30 7 2.2609 2.0668 1.0605 31 1 -0.3633 0.5138 0.8901 32 1 -0.3634 0.5140 -0.8899 33 1 -0.3633 -1.0276 -0.0005 34 1 1.8933 -0.5138 -0.8901 35 1 1.8933 -0.5139 0.8899 36 1 2.9550 4.0708 -1.3693 37 1 1.8568 3.0685 4.1325 38 1 2.5102 2.1987 2.7221 39 1 3.5590 1.4812 4.9000 40 1 4.7390 2.1390 3.7403 41 1 5.0923 3.0589 6.0265 42 1 3.4334 3.7032 6.0136 43 1 6.1858 4.7022 7.3414 44 1 7.1359 4.6982 5.8194 45 1 6.8582 6.8627 7.8967 46 1 8.2260 6.5150 6.8049 47 1 8.9775 8.9314 8.5344 48 1 6.3007 6.7476 4.0661 49 1 4.9337 7.6929 4.7287 50 1 2.8383 5.6021 4.4426 51 1 4.0191 6.0860 3.1981 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000961148678.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:03:31 Heat of formation + Delta-G solvation = 83.651167 kcal Electronic energy + Delta-G solvation = -31143.604267 eV Core-core repulsion = 27080.677625 eV Total energy + Delta-G solvation = -4062.926642 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -44.76674 -41.25407 -39.62943 -38.02148 -35.85470 -35.26929 -34.03797 -33.35621 -32.44769 -31.44614 -30.78338 -28.64058 -27.35511 -26.37211 -25.49351 -24.58358 -23.86432 -22.51749 -22.10057 -21.69037 -20.87817 -20.40276 -18.85445 -18.47945 -18.09203 -17.78439 -16.99649 -16.80632 -16.46682 -16.06772 -15.92550 -15.60505 -15.48214 -15.17436 -15.06539 -14.66668 -14.21278 -14.05187 -14.00174 -13.79141 -13.65725 -13.56681 -13.35913 -13.11470 -13.01973 -12.87841 -12.70952 -12.44366 -12.25488 -12.22760 -12.09306 -12.03046 -11.79381 -11.69354 -11.58059 -11.55317 -11.39446 -11.36403 -11.07881 -10.82798 -10.70164 -10.52719 -9.65749 -8.88742 -7.84868 -5.20051 0.14925 0.85653 1.14429 1.43924 1.47981 1.54168 1.87828 2.10724 2.49541 2.79496 3.32298 3.51477 3.62940 3.68901 3.86639 3.90592 3.94779 3.99099 4.01603 4.13166 4.22812 4.27132 4.30675 4.34066 4.44965 4.52692 4.57762 4.60997 4.70586 4.74851 4.77849 4.82039 4.89146 4.90993 4.93490 4.99086 5.04724 5.11531 5.15387 5.19594 5.20338 5.35971 5.42268 5.44835 5.49778 5.56947 5.70061 5.79379 5.79794 6.20781 6.27586 6.90010 7.09175 7.11044 7.78543 8.44012 9.25524 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.023212 B = 0.002172 C = 0.002032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1205.969766 B =12889.569834 C =13772.880282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.116 3.884 3 N -0.131 5.131 4 N -0.293 5.293 5 C 0.026 3.974 6 C -0.059 4.059 7 C 0.599 3.401 8 O -0.568 6.568 9 N -0.592 5.592 10 C 0.072 3.928 11 C -0.123 4.123 12 C -0.111 4.111 13 C -0.073 4.073 14 H 0.060 0.940 15 C -0.075 4.075 16 H 0.081 0.919 17 C -0.118 4.118 18 C 0.182 3.818 19 N -0.630 5.630 20 C -0.244 4.244 21 H 0.078 0.922 22 C -0.069 4.069 23 N -0.951 5.951 24 Si 0.980 3.020 25 H -0.276 1.276 26 H -0.291 1.291 27 H -0.279 1.279 28 C 0.135 3.865 29 C 0.119 3.881 30 N -0.242 5.242 31 H 0.058 0.942 32 H 0.054 0.946 33 H 0.116 0.884 34 H 0.130 0.870 35 H 0.135 0.865 36 H 0.217 0.783 37 H 0.080 0.920 38 H 0.137 0.863 39 H 0.102 0.898 40 H 0.054 0.946 41 H 0.074 0.926 42 H 0.076 0.924 43 H 0.086 0.914 44 H 0.065 0.935 45 H 0.012 0.988 46 H 0.001 0.999 47 H 0.247 0.753 48 H 0.011 0.989 49 H 0.036 0.964 50 H 0.082 0.918 51 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.398 -25.674 -13.399 34.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.001 4.001 3 N -0.035 5.035 4 N -0.133 5.133 5 C -0.156 4.156 6 C -0.219 4.219 7 C 0.385 3.615 8 O -0.446 6.446 9 N -0.322 5.322 10 C -0.050 4.050 11 C -0.161 4.161 12 C -0.149 4.149 13 C -0.093 4.093 14 H 0.079 0.921 15 C -0.095 4.095 16 H 0.099 0.901 17 C -0.156 4.156 18 C 0.057 3.943 19 N -0.356 5.356 20 C -0.373 4.373 21 H 0.096 0.904 22 C -0.262 4.262 23 N -0.600 5.600 24 Si 0.808 3.192 25 H -0.202 1.202 26 H -0.217 1.217 27 H -0.205 1.205 28 C 0.010 3.990 29 C -0.004 4.004 30 N -0.091 5.091 31 H 0.077 0.923 32 H 0.074 0.926 33 H 0.135 0.865 34 H 0.148 0.852 35 H 0.153 0.847 36 H 0.234 0.766 37 H 0.098 0.902 38 H 0.154 0.846 39 H 0.121 0.879 40 H 0.073 0.927 41 H 0.093 0.907 42 H 0.094 0.906 43 H 0.105 0.895 44 H 0.083 0.917 45 H 0.030 0.970 46 H 0.019 0.981 47 H 0.056 0.944 48 H 0.029 0.971 49 H 0.054 0.946 50 H 0.100 0.900 51 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -18.596 -26.256 -13.546 34.910 hybrid contribution 1.143 2.472 0.206 2.731 sum -17.453 -23.785 -13.340 32.377 Atomic orbital electron populations 1.22179 0.92001 1.05598 1.02654 1.22702 0.96904 0.72108 1.08379 1.49081 1.41323 1.14427 0.98693 1.74029 1.17884 1.05337 1.16071 1.25069 1.01252 0.95772 0.93503 1.22840 1.10607 0.93529 0.94960 1.17081 0.77138 0.85491 0.81803 1.90808 1.52194 1.25889 1.75672 1.48027 1.62438 1.16853 1.04917 1.22891 0.97576 0.84519 1.00056 1.21850 0.97937 0.98928 0.97369 1.21588 1.01894 0.93640 0.97780 1.21315 0.96911 0.95480 0.95577 0.92137 1.22176 0.97110 0.93667 0.96526 0.90054 1.22726 0.96378 0.96386 1.00136 1.20980 0.94908 0.86265 0.92119 1.44890 1.53143 1.04617 1.32975 1.19421 1.22314 0.84426 1.11179 0.90434 1.25679 1.00170 1.02426 0.97878 1.70190 1.36119 1.34484 1.19211 0.85135 0.77703 0.79472 0.76927 1.20160 1.21736 1.20527 1.21753 0.91870 0.93810 0.91592 1.21687 0.96864 0.89596 0.92204 1.73955 1.15973 1.04080 1.15085 0.92269 0.92639 0.86533 0.85167 0.84682 0.76632 0.90177 0.84615 0.87925 0.92689 0.90733 0.90583 0.89530 0.91655 0.97001 0.98080 0.94398 0.97129 0.94571 0.90014 0.91199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.56 10.24 71.98 0.74 0.18 16 2 C 0.12 0.53 7.24 86.38 0.63 1.16 16 3 N -0.13 -1.93 3.94 -187.50 -0.74 -2.67 16 4 N -0.29 -5.43 12.01 -56.16 -0.67 -6.10 16 5 C 0.03 0.54 12.05 85.45 1.03 1.57 16 6 C -0.06 -1.37 6.95 42.24 0.29 -1.07 16 7 C 0.60 17.01 7.70 86.77 0.67 17.68 16 8 O -0.57 -20.28 16.39 -3.92 -0.06 -20.34 16 9 N -0.59 -14.58 2.97 -822.37 -2.44 -17.02 16 10 C 0.07 1.24 6.33 86.36 0.55 1.79 16 11 C -0.12 -1.91 6.08 30.67 0.19 -1.72 16 12 C -0.11 -2.14 5.04 30.62 0.15 -1.99 16 13 C -0.07 -1.93 1.85 -10.71 -0.02 -1.95 16 14 H 0.06 1.79 8.11 -2.39 -0.02 1.77 16 15 C -0.07 -2.52 2.56 -9.40 -0.02 -2.54 16 16 H 0.08 2.67 8.14 -2.39 -0.02 2.65 16 17 C -0.12 -4.31 5.58 31.78 0.18 -4.13 16 18 C 0.18 9.38 5.38 86.68 0.47 9.84 16 19 N -0.63 -34.46 3.40 -691.31 -2.35 -36.81 16 20 C -0.24 -14.55 10.28 84.03 0.86 -13.69 16 21 H 0.08 4.46 7.83 -2.91 -0.02 4.43 16 22 C -0.07 -4.10 5.49 84.86 0.47 -3.64 16 23 N -0.95 -59.38 10.33 21.65 0.22 -59.15 16 24 Si 0.98 47.81 29.55 68.60 2.03 49.84 16 25 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 26 H -0.29 -14.13 7.11 99.48 0.71 -13.42 16 27 H -0.28 -13.23 7.11 99.48 0.71 -12.52 16 28 C 0.13 5.90 5.74 86.85 0.50 6.40 16 29 C 0.12 3.24 5.39 86.36 0.47 3.70 16 30 N -0.24 -4.37 8.51 -48.17 -0.41 -4.78 16 31 H 0.06 0.35 8.14 -2.39 -0.02 0.33 16 32 H 0.05 0.36 8.14 -2.38 -0.02 0.34 16 33 H 0.12 -0.24 8.14 -2.39 -0.02 -0.26 16 34 H 0.13 0.16 8.14 -2.39 -0.02 0.15 16 35 H 0.14 0.03 8.14 -2.39 -0.02 0.02 16 36 H 0.22 3.82 8.06 -2.91 -0.02 3.80 16 37 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 38 H 0.14 2.23 3.74 -74.98 -0.28 1.94 16 39 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 40 H 0.05 0.98 8.14 -2.38 -0.02 0.96 16 41 H 0.07 1.41 7.46 -2.39 -0.02 1.39 16 42 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 43 H 0.09 2.69 8.11 -2.38 -0.02 2.67 16 44 H 0.06 2.26 8.01 -2.39 -0.02 2.24 16 45 H 0.01 0.67 7.39 -2.39 -0.02 0.65 16 46 H 0.00 0.05 7.52 -2.39 -0.02 0.04 16 47 H 0.25 14.94 8.31 -92.71 -0.77 14.17 16 48 H 0.01 0.49 8.04 -2.39 -0.02 0.47 16 49 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 50 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 51 H 0.07 2.32 6.45 -2.39 -0.02 2.31 16 Total: -1.00 -79.80 399.06 3.35 -76.46 By element: Atomic # 1 Polarization: 8.34 SS G_CDS: 0.64 Total: 8.98 kcal Atomic # 6 Polarization: 4.46 SS G_CDS: 7.14 Total: 11.59 kcal Atomic # 7 Polarization: -120.14 SS G_CDS: -6.40 Total: -126.53 kcal Atomic # 8 Polarization: -20.28 SS G_CDS: -0.06 Total: -20.34 kcal Atomic # 14 Polarization: 47.81 SS G_CDS: 2.03 Total: 49.84 kcal Total: -79.80 3.35 -76.46 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000961148678.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.110 kcal (2) G-P(sol) polarization free energy of solvation -79.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.459 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds