Wall clock time and date at job start Wed Apr 1 2020 05:03:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46488 * 109.47307 * 2 1 4 4 N 1.28518 * 124.44627 * 270.02305 * 3 2 1 5 5 C 1.31136 * 109.05975 * 179.69653 * 4 3 2 6 6 C 1.40920 * 105.77563 * 0.42820 * 5 4 3 7 7 C 1.47807 * 127.23563 * 179.84197 * 6 5 4 8 8 O 1.21558 * 119.99868 * 353.06842 * 7 6 5 9 9 N 1.34770 * 119.99837 * 173.07449 * 7 6 5 10 10 C 1.46930 * 120.63409 * 353.19296 * 9 7 6 11 11 C 1.53186 * 108.77580 * 233.63247 * 10 9 7 12 12 C 1.53039 * 109.31413 * 305.36369 * 11 10 9 13 13 C 1.53039 * 109.53874 * 61.36433 * 12 11 10 14 14 H 1.09008 * 109.52201 * 58.60627 * 13 12 11 15 15 C 1.53002 * 109.49844 * 178.68290 * 13 12 11 16 16 H 1.08996 * 110.77947 * 56.59802 * 15 13 12 17 17 C 1.55155 * 110.72193 * 179.84022 * 15 13 12 18 18 C 1.54904 * 101.58369 * 153.86694 * 17 15 13 19 19 N 1.47431 * 104.83023 * 322.98909 * 18 17 15 20 20 C 1.36938 * 125.64573 * 204.08797 * 19 18 17 21 21 H 1.07995 * 119.99884 * 180.02562 * 20 19 18 22 22 C 1.38808 * 120.00235 * 359.75489 * 20 19 18 23 23 N 1.31622 * 119.99855 * 0.27321 * 22 20 19 24 24 Si 1.86799 * 120.00194 * 180.26951 * 22 20 19 25 25 H 1.48499 * 109.46607 * 60.00164 * 24 22 20 26 26 H 1.48497 * 109.47159 * 179.97438 * 24 22 20 27 27 H 1.48498 * 109.47101 * 300.00191 * 24 22 20 28 28 C 1.47013 * 108.70242 * 24.35886 * 19 18 17 29 29 C 1.46930 * 120.63069 * 173.21676 * 9 7 6 30 30 N 1.28595 * 124.44585 * 90.00173 * 3 2 1 31 31 H 1.08994 * 109.47224 * 300.00445 * 1 2 3 32 32 H 1.09008 * 109.46940 * 59.99763 * 1 2 3 33 33 H 1.08994 * 109.47760 * 179.97438 * 1 2 3 34 34 H 1.09005 * 109.46805 * 239.99554 * 2 1 3 35 35 H 1.08999 * 109.46778 * 120.00358 * 2 1 3 36 36 H 1.08001 * 127.11349 * 180.29510 * 5 4 3 37 37 H 1.09000 * 109.58517 * 353.41880 * 10 9 7 38 38 H 1.08999 * 109.58888 * 113.84497 * 10 9 7 39 39 H 1.09007 * 109.49976 * 65.31602 * 11 10 9 40 40 H 1.09003 * 109.49708 * 185.37902 * 11 10 9 41 41 H 1.08995 * 109.45813 * 301.34572 * 12 11 10 42 42 H 1.09004 * 109.45586 * 181.38707 * 12 11 10 43 43 H 1.08998 * 111.00275 * 35.79181 * 17 15 13 44 44 H 1.09003 * 111.03557 * 271.95863 * 17 15 13 45 45 H 1.08999 * 110.37139 * 204.15447 * 18 17 15 46 46 H 1.08994 * 110.45924 * 81.87753 * 18 17 15 47 47 H 0.97009 * 120.00026 * 180.02562 * 23 22 20 48 48 H 1.09001 * 109.88847 * 118.13107 * 28 19 18 49 49 H 1.09010 * 109.88228 * 239.29246 * 28 19 18 50 50 H 1.09003 * 109.58286 * 6.58137 * 29 9 7 51 51 H 1.08999 * 109.58538 * 246.15529 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 7 2.2603 2.0666 -1.0598 5 6 2.6757 3.2608 -0.7119 6 6 2.6850 3.2677 0.6973 7 6 3.0791 4.3829 1.5836 8 8 3.5643 5.3924 1.1112 9 7 2.9007 4.2805 2.9155 10 6 2.1822 3.1341 3.4886 11 6 1.0516 3.6567 4.3803 12 6 1.6304 4.6192 5.4199 13 6 2.2760 5.8114 4.7100 14 1 1.5310 6.3159 4.0946 15 6 2.8254 6.7891 5.7508 16 1 3.5303 6.2902 6.4158 17 6 3.4910 8.0089 5.0606 18 6 3.3410 9.1017 6.1482 19 7 2.0254 8.8452 6.7620 20 6 1.2562 9.7700 7.4165 21 1 0.3027 9.4814 7.8335 22 6 1.7044 11.0770 7.5487 23 7 2.8664 11.4289 7.0403 24 14 0.6585 12.3367 8.4479 25 1 0.4388 11.8895 9.8469 26 1 1.3563 13.6475 8.4516 27 1 -0.6508 12.4742 7.7608 28 6 1.6790 7.4307 6.5609 29 6 3.4206 5.3133 3.8220 30 7 2.2609 2.0668 1.0605 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3634 -1.0276 -0.0005 34 1 1.8933 -0.5139 -0.8900 35 1 1.8933 -0.5139 0.8900 36 1 2.9552 4.0707 -1.3694 37 1 1.7637 2.5269 2.6861 38 1 2.8692 2.5330 4.0843 39 1 0.3179 4.1809 3.7679 40 1 0.5711 2.8195 4.8867 41 1 2.3817 4.1010 6.0158 42 1 0.8315 4.9734 6.0713 43 1 2.9544 8.2849 4.1528 44 1 4.5415 7.8122 4.8465 45 1 3.3615 10.0930 5.6954 46 1 4.1316 9.0092 6.8928 47 1 3.1798 12.3422 7.1330 48 1 1.5799 6.9324 7.5252 49 1 0.7453 7.3532 6.0036 50 1 3.8191 6.1439 3.2394 51 1 4.2085 4.8898 4.4448 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000961148688.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:03:37 Heat of formation + Delta-G solvation = 105.400298 kcal Electronic energy + Delta-G solvation = -31143.060930 eV Core-core repulsion = 27081.077401 eV Total energy + Delta-G solvation = -4061.983529 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -44.01438 -40.20083 -38.23491 -36.63929 -35.32792 -33.86446 -32.85201 -32.24027 -31.18365 -30.67206 -28.85169 -27.37343 -26.09211 -25.01885 -24.54950 -23.51052 -22.76191 -21.86612 -20.99941 -19.90783 -19.45250 -19.30023 -17.84297 -17.21203 -16.95908 -16.74483 -15.99220 -15.55973 -15.34110 -14.86949 -14.70092 -14.47839 -14.35576 -13.96955 -13.78406 -13.53164 -13.39110 -13.14857 -12.95718 -12.79054 -12.36822 -12.28806 -12.13828 -12.01689 -11.83773 -11.50003 -11.35911 -11.23492 -10.97182 -10.88375 -10.85093 -10.76606 -10.51138 -10.41562 -10.22570 -10.07067 -9.91832 -9.78278 -9.74185 -9.63294 -9.33556 -8.65437 -8.56666 -6.74215 -5.57526 -2.98962 0.99196 1.65756 1.72640 2.81720 3.07912 3.44676 3.48420 3.50171 3.55995 4.18369 4.21689 4.47271 4.50184 4.54997 4.68526 4.77244 4.91622 4.93183 4.95558 5.04822 5.07731 5.26966 5.30871 5.40473 5.43688 5.52128 5.53596 5.59726 5.66642 5.73067 5.77438 5.82954 5.86224 6.00632 6.05800 6.11832 6.13602 6.27619 6.35179 6.42975 6.51420 6.56450 6.70821 6.74944 6.87442 7.08198 7.25178 7.62202 7.70574 7.76467 7.95521 8.01358 8.45701 9.30151 9.91552 10.57516 11.46116 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.022782 B = 0.002125 C = 0.002053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1228.729748 B =13172.490256 C =13637.216180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.131 3.869 3 N -0.145 5.145 4 N -0.289 5.289 5 C 0.035 3.965 6 C -0.038 4.038 7 C 0.604 3.396 8 O -0.525 6.525 9 N -0.594 5.594 10 C 0.088 3.912 11 C -0.133 4.133 12 C -0.117 4.117 13 C -0.086 4.086 14 H 0.075 0.925 15 C -0.092 4.092 16 H 0.070 0.930 17 C -0.141 4.141 18 C 0.152 3.848 19 N -0.605 5.605 20 C -0.221 4.221 21 H 0.075 0.925 22 C -0.013 4.013 23 N -0.922 5.922 24 Si 0.914 3.086 25 H -0.286 1.286 26 H -0.290 1.290 27 H -0.285 1.285 28 C 0.145 3.855 29 C 0.118 3.882 30 N -0.250 5.250 31 H 0.069 0.931 32 H 0.068 0.932 33 H 0.088 0.912 34 H 0.111 0.889 35 H 0.111 0.889 36 H 0.208 0.792 37 H 0.118 0.882 38 H 0.066 0.934 39 H 0.064 0.936 40 H 0.072 0.928 41 H 0.063 0.937 42 H 0.070 0.930 43 H 0.060 0.940 44 H 0.057 0.943 45 H 0.104 0.896 46 H 0.010 0.990 47 H 0.252 0.748 48 H 0.017 0.983 49 H 0.021 0.979 50 H 0.098 0.902 51 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.910 -27.158 -13.811 30.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.012 3.988 3 N -0.047 5.047 4 N -0.128 5.128 5 C -0.149 4.149 6 C -0.200 4.200 7 C 0.389 3.611 8 O -0.399 6.399 9 N -0.326 5.326 10 C -0.035 4.035 11 C -0.171 4.171 12 C -0.154 4.154 13 C -0.106 4.106 14 H 0.094 0.906 15 C -0.112 4.112 16 H 0.088 0.912 17 C -0.179 4.179 18 C 0.027 3.973 19 N -0.331 5.331 20 C -0.350 4.350 21 H 0.093 0.907 22 C -0.208 4.208 23 N -0.571 5.571 24 Si 0.744 3.256 25 H -0.213 1.213 26 H -0.216 1.216 27 H -0.212 1.212 28 C 0.019 3.981 29 C -0.004 4.004 30 N -0.098 5.098 31 H 0.088 0.912 32 H 0.087 0.913 33 H 0.107 0.893 34 H 0.129 0.871 35 H 0.129 0.871 36 H 0.225 0.775 37 H 0.135 0.865 38 H 0.085 0.915 39 H 0.082 0.918 40 H 0.091 0.909 41 H 0.081 0.919 42 H 0.089 0.911 43 H 0.079 0.921 44 H 0.075 0.925 45 H 0.122 0.878 46 H 0.028 0.972 47 H 0.062 0.938 48 H 0.035 0.965 49 H 0.039 0.961 50 H 0.117 0.883 51 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -2.077 -27.675 -14.013 31.090 hybrid contribution -0.280 1.369 0.657 1.544 sum -2.357 -26.306 -13.355 29.596 Atomic orbital electron populations 1.22200 0.92767 1.04159 1.03934 1.22116 0.96302 0.74180 1.06166 1.48449 1.43440 1.13448 0.99390 1.74010 1.17689 1.05499 1.15622 1.24855 1.01220 0.95137 0.93655 1.23147 1.08577 0.93421 0.94861 1.16750 0.78677 0.84410 0.81272 1.90834 1.45141 1.29260 1.74696 1.47935 1.55195 1.24420 1.05090 1.22409 0.94132 0.87814 0.99195 1.21925 0.97704 0.99656 0.97856 1.21620 1.00595 0.95710 0.97490 1.21497 0.97095 0.95606 0.96367 0.90627 1.22129 0.98017 0.95014 0.95991 0.91165 1.23068 0.98623 0.96515 0.99718 1.21903 0.85914 0.98129 0.91348 1.44520 1.19412 1.03852 1.65352 1.19022 0.99527 0.89054 1.27352 0.90693 1.24789 0.97278 0.97358 1.01417 1.69812 1.19606 1.17648 1.50027 0.86163 0.79244 0.80783 0.79371 1.21308 1.21601 1.21218 1.21271 0.94717 0.86459 0.95657 1.21821 0.95987 0.90927 0.91620 1.74270 1.15771 1.04854 1.14893 0.91202 0.91264 0.89344 0.87063 0.87056 0.77495 0.86507 0.91532 0.91755 0.90905 0.91856 0.91093 0.92089 0.92474 0.87799 0.97223 0.93758 0.96490 0.96102 0.88339 0.91241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.56 10.24 37.16 0.38 -0.18 16 2 C 0.13 0.52 7.24 -4.05 -0.03 0.49 16 3 N -0.14 -1.23 3.94 -10.62 -0.04 -1.28 16 4 N -0.29 -2.88 12.01 30.90 0.37 -2.51 16 5 C 0.03 0.37 12.05 -16.84 -0.20 0.16 16 6 C -0.04 -0.45 6.88 -82.68 -0.57 -1.02 16 7 C 0.60 8.47 7.69 -12.35 -0.09 8.37 16 8 O -0.52 -8.89 16.38 5.31 0.09 -8.80 16 9 N -0.59 -7.57 2.97 -173.90 -0.52 -8.08 16 10 C 0.09 0.89 6.13 -3.71 -0.02 0.87 16 11 C -0.13 -1.34 6.08 -26.61 -0.16 -1.50 16 12 C -0.12 -1.39 5.03 -26.69 -0.13 -1.52 16 13 C -0.09 -1.23 1.74 -90.50 -0.16 -1.39 16 14 H 0.08 1.22 8.07 -51.92 -0.42 0.81 16 15 C -0.09 -1.59 2.48 -88.78 -0.22 -1.82 16 16 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 17 C -0.14 -2.76 5.49 -24.59 -0.13 -2.89 16 18 C 0.15 3.82 5.88 -2.53 -0.01 3.80 16 19 N -0.61 -16.02 3.39 -170.07 -0.58 -16.59 16 20 C -0.22 -6.34 10.27 -15.06 -0.15 -6.50 16 21 H 0.08 2.07 7.83 -52.49 -0.41 1.66 16 22 C -0.01 -0.38 5.49 -17.43 -0.10 -0.47 16 23 N -0.92 -27.63 10.09 55.49 0.56 -27.07 16 24 Si 0.91 22.58 29.55 -169.99 -5.02 17.56 16 25 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 26 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 27 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 28 C 0.15 3.08 5.99 -3.06 -0.02 3.06 16 29 C 0.12 1.60 5.39 -3.71 -0.02 1.58 16 30 N -0.25 -2.52 8.66 33.42 0.29 -2.23 16 31 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.07 0.31 8.14 -51.92 -0.42 -0.12 16 33 H 0.09 0.09 8.14 -51.93 -0.42 -0.33 16 34 H 0.11 0.26 8.14 -51.93 -0.42 -0.16 16 35 H 0.11 0.25 8.14 -51.93 -0.42 -0.18 16 36 H 0.21 1.78 8.06 -52.49 -0.42 1.36 16 37 H 0.12 1.14 4.19 -63.83 -0.27 0.88 16 38 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.06 0.71 8.14 -51.92 -0.42 0.29 16 40 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.07 0.89 7.46 -51.93 -0.39 0.51 16 43 H 0.06 1.23 8.05 -51.93 -0.42 0.81 16 44 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 45 H 0.10 2.94 5.88 -51.93 -0.31 2.64 16 46 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 47 H 0.25 7.32 8.31 -40.82 -0.34 6.98 16 48 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 49 H 0.02 0.45 7.76 -51.92 -0.40 0.04 16 50 H 0.10 1.52 6.36 -51.93 -0.33 1.19 16 51 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 398.34 15.07 6.00 6.00 Total: -1.00 -34.52 398.34 -8.92 -43.44 By element: Atomic # 1 Polarization: 6.93 SS G_CDS: -8.42 Total: -1.49 kcal Atomic # 6 Polarization: 2.70 SS G_CDS: -1.65 Total: 1.05 kcal Atomic # 7 Polarization: -57.84 SS G_CDS: 0.08 Total: -57.76 kcal Atomic # 8 Polarization: -8.89 SS G_CDS: 0.09 Total: -8.80 kcal Atomic # 14 Polarization: 22.58 SS G_CDS: -5.02 Total: 17.56 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -34.52 -8.92 -43.44 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000961148688.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.838 kcal (2) G-P(sol) polarization free energy of solvation -34.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.437 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds