Wall clock time and date at job start Wed Apr 1 2020 05:50:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34811 * 126.59255 * 2 1 4 4 C 1.36601 * 106.83732 * 180.02562 * 3 2 1 5 5 C 1.47524 * 125.76757 * 180.26312 * 4 3 2 6 6 O 1.21591 * 120.00481 * 352.45547 * 5 4 3 7 7 N 1.34776 * 119.99900 * 172.45584 * 5 4 3 8 8 C 1.46929 * 120.62906 * 3.82756 * 7 5 4 9 9 C 1.52763 * 109.00885 * 233.58456 * 8 7 5 10 10 C 1.53036 * 109.38604 * 305.58895 * 9 8 7 11 11 C 1.52993 * 109.45394 * 181.24982 * 10 9 8 12 12 H 1.09004 * 109.50216 * 299.87683 * 11 10 9 13 13 C 1.53045 * 109.50139 * 179.77439 * 11 10 9 14 14 C 1.53036 * 109.53863 * 178.68748 * 13 11 10 15 15 C 1.53192 * 109.31472 * 61.36594 * 14 13 11 16 16 N 1.46929 * 108.77479 * 305.36480 * 15 14 13 17 17 C 1.36934 * 120.62824 * 233.58514 * 16 15 14 18 18 H 1.08001 * 120.00057 * 152.89987 * 17 16 15 19 19 C 1.38807 * 120.00391 * 332.90179 * 17 16 15 20 20 N 1.31625 * 119.99949 * 338.69990 * 19 17 16 21 21 Si 1.86797 * 120.00318 * 158.70213 * 19 17 16 22 22 H 1.48502 * 109.47315 * 94.55880 * 21 19 17 23 23 H 1.48497 * 109.47323 * 214.55757 * 21 19 17 24 24 H 1.48504 * 109.47242 * 334.55798 * 21 19 17 25 25 C 1.46920 * 118.73748 * 53.60759 * 16 15 14 26 26 C 1.53048 * 109.53744 * 61.23613 * 10 9 8 27 27 C 1.46928 * 120.63264 * 184.11191 * 7 5 4 28 28 N 1.34395 * 108.45849 * 0.02562 * 4 3 2 29 29 N 1.28764 * 109.52309 * 359.97438 * 28 4 3 30 30 H 1.09001 * 109.47417 * 270.00550 * 1 2 3 31 31 H 1.09008 * 109.47013 * 29.99981 * 1 2 3 32 32 H 1.08997 * 109.47262 * 150.00038 * 1 2 3 33 33 H 1.07999 * 126.58558 * 0.02562 * 3 2 1 34 34 H 1.08996 * 109.58670 * 353.41685 * 8 7 5 35 35 H 1.08995 * 109.58617 * 113.84528 * 8 7 5 36 36 H 1.09003 * 109.56757 * 185.54871 * 9 8 7 37 37 H 1.09001 * 109.35988 * 65.49709 * 9 8 7 38 38 H 1.09001 * 109.45966 * 301.22177 * 10 9 8 39 39 H 1.08997 * 109.45843 * 298.70468 * 13 11 10 40 40 H 1.08995 * 109.45705 * 58.66841 * 13 11 10 41 41 H 1.09010 * 109.49691 * 301.41366 * 14 13 11 42 42 H 1.08994 * 109.52582 * 181.33834 * 14 13 11 43 43 H 1.09000 * 109.58491 * 185.57876 * 15 14 13 44 44 H 1.09002 * 109.58657 * 65.15173 * 15 14 13 45 45 H 0.96997 * 120.00211 * 179.97438 * 20 19 17 46 46 H 1.09005 * 109.58801 * 186.60045 * 25 16 15 47 47 H 1.09000 * 109.70759 * 66.24883 * 25 16 15 48 48 H 1.09001 * 109.50018 * 178.68589 * 26 10 9 49 49 H 1.09001 * 109.52018 * 58.60833 * 26 10 9 50 50 H 1.09006 * 109.58434 * 246.15095 * 27 7 5 51 51 H 1.08999 * 109.58353 * 6.57391 * 27 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2686 1.0824 0.0000 4 6 3.5542 0.6207 -0.0006 5 6 4.7703 1.4558 0.0047 6 8 4.6808 2.6611 -0.1281 7 7 5.9807 0.8827 0.1568 8 6 6.1125 -0.5786 0.2345 9 6 6.8853 -0.9418 1.5012 10 6 8.2173 -0.1885 1.5173 11 6 9.0061 -0.5749 2.7699 12 1 8.4311 -0.3114 3.6577 13 6 10.3409 0.1737 2.7842 14 6 11.1165 -0.1872 4.0532 15 6 11.4058 -1.6915 4.0596 16 7 10.1384 -2.4175 3.9001 17 6 9.7723 -3.3871 4.7951 18 1 8.7271 -3.6050 4.9578 19 6 10.7446 -4.0900 5.4932 20 7 11.9750 -4.1486 5.0293 21 14 10.3070 -4.9528 7.0912 22 1 9.9724 -6.3724 6.8117 23 1 11.4637 -4.8906 8.0202 24 1 9.1369 -4.2814 7.7120 25 6 9.2715 -2.0837 2.7618 26 6 7.9526 1.3189 1.5262 27 6 7.1927 1.7075 0.2542 28 7 3.5238 -0.7229 -0.0015 29 7 2.3008 -1.1257 -0.0010 30 1 -0.3634 0.0001 1.0277 31 1 -0.3633 0.8901 -0.5139 32 1 -0.3633 -0.8900 -0.5138 33 1 1.9561 2.1162 0.0004 34 1 5.1226 -1.0335 0.2690 35 1 6.6544 -0.9435 -0.6380 36 1 7.0741 -2.0152 1.5185 37 1 6.2981 -0.6612 2.3756 38 1 8.7935 -0.4507 0.6299 39 1 10.9253 -0.1092 1.9087 40 1 10.1552 1.2475 2.7652 41 1 10.5221 0.0728 4.9292 42 1 12.0565 0.3641 4.0748 43 1 11.8700 -1.9703 5.0056 44 1 12.0747 -1.9386 3.2351 45 1 12.6545 -4.6394 5.5173 46 1 8.3275 -2.6212 2.8514 47 1 9.7640 -2.3630 1.8304 48 1 8.9013 1.8547 1.5612 49 1 7.3557 1.5787 2.4004 50 1 7.8245 1.5328 -0.6167 51 1 6.9151 2.7605 0.3015 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000961368040.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:50:47 Heat of formation + Delta-G solvation = 67.773502 kcal Electronic energy + Delta-G solvation = -31281.787500 eV Core-core repulsion = 27218.172351 eV Total energy + Delta-G solvation = -4063.615149 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -43.30448 -41.08976 -39.75461 -38.01612 -35.86686 -35.36083 -33.81788 -32.69975 -32.21531 -31.58036 -30.56069 -28.75343 -27.22187 -26.45658 -24.80557 -24.30873 -23.38313 -22.98620 -22.73338 -21.54853 -20.56537 -20.33903 -18.72011 -18.47110 -17.48911 -17.29068 -16.87513 -16.82156 -16.24030 -15.89744 -15.77491 -15.47543 -15.20790 -15.00449 -14.91043 -14.72199 -14.53482 -14.24152 -14.15689 -14.03025 -13.92618 -13.69253 -13.52551 -13.05932 -13.02012 -12.86510 -12.77136 -12.49383 -12.31574 -12.17068 -12.05144 -11.96150 -11.70163 -11.51214 -11.47808 -11.34278 -11.33575 -11.12348 -10.85762 -10.53343 -10.47767 -10.39235 -9.60994 -8.66596 -7.87773 -5.29218 0.15192 0.55742 1.17676 1.44134 1.46025 1.56543 1.95406 2.19851 2.51296 3.08449 3.25166 3.42202 3.64723 3.76468 3.85181 3.91531 3.95295 3.97247 4.19828 4.21779 4.32947 4.37576 4.38547 4.40449 4.48359 4.58523 4.61086 4.64408 4.69715 4.73493 4.80682 4.88763 4.94419 4.97118 5.04791 5.11465 5.14386 5.17113 5.24885 5.32786 5.37135 5.41646 5.43261 5.46382 5.56417 5.62598 5.67955 5.73090 5.80876 6.32214 6.38996 6.82278 7.09170 7.15450 7.89197 8.40729 9.18505 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.013819 B = 0.002511 C = 0.002201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2025.711752 B =11147.544801 C =12717.840738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.348 5.348 3 C 0.111 3.889 4 C -0.125 4.125 5 C 0.601 3.399 6 O -0.571 6.571 7 N -0.593 5.593 8 C 0.074 3.926 9 C -0.122 4.122 10 C -0.071 4.071 11 C -0.083 4.083 12 H 0.051 0.949 13 C -0.098 4.098 14 C -0.133 4.133 15 C 0.175 3.825 16 N -0.611 5.611 17 C -0.262 4.262 18 H 0.062 0.938 19 C -0.051 4.051 20 N -0.932 5.932 21 Si 0.962 3.038 22 H -0.285 1.285 23 H -0.291 1.291 24 H -0.272 1.272 25 C 0.152 3.848 26 C -0.119 4.119 27 C 0.113 3.887 28 N -0.224 5.224 29 N -0.095 5.095 30 H 0.107 0.893 31 H 0.132 0.868 32 H 0.108 0.892 33 H 0.240 0.760 34 H 0.139 0.861 35 H 0.073 0.927 36 H 0.072 0.928 37 H 0.050 0.950 38 H 0.076 0.924 39 H 0.055 0.945 40 H 0.080 0.920 41 H 0.046 0.954 42 H 0.068 0.932 43 H 0.045 0.955 44 H -0.005 1.005 45 H 0.250 0.750 46 H 0.048 0.952 47 H 0.009 0.991 48 H 0.094 0.906 49 H 0.055 0.945 50 H 0.083 0.917 51 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.559 14.935 -13.020 30.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.133 5.133 3 C -0.047 4.047 4 C -0.265 4.265 5 C 0.388 3.612 6 O -0.451 6.451 7 N -0.323 5.323 8 C -0.049 4.049 9 C -0.160 4.160 10 C -0.090 4.090 11 C -0.103 4.103 12 H 0.069 0.931 13 C -0.135 4.135 14 C -0.172 4.172 15 C 0.050 3.950 16 N -0.334 5.334 17 C -0.392 4.392 18 H 0.080 0.920 19 C -0.246 4.246 20 N -0.578 5.578 21 Si 0.789 3.211 22 H -0.212 1.212 23 H -0.217 1.217 24 H -0.197 1.197 25 C 0.027 3.973 26 C -0.157 4.157 27 C -0.009 4.009 28 N -0.096 5.096 29 N -0.074 5.074 30 H 0.125 0.875 31 H 0.150 0.850 32 H 0.127 0.873 33 H 0.256 0.744 34 H 0.156 0.844 35 H 0.091 0.909 36 H 0.091 0.909 37 H 0.069 0.931 38 H 0.094 0.906 39 H 0.074 0.926 40 H 0.099 0.901 41 H 0.064 0.936 42 H 0.086 0.914 43 H 0.063 0.937 44 H 0.013 0.987 45 H 0.059 0.941 46 H 0.067 0.933 47 H 0.027 0.973 48 H 0.112 0.888 49 H 0.074 0.926 50 H 0.101 0.899 51 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -22.526 13.913 -13.033 29.510 hybrid contribution 0.306 -0.130 1.085 1.135 sum -22.220 13.783 -11.948 28.748 Atomic orbital electron populations 1.22749 0.69254 1.07901 1.06595 1.50716 1.10742 1.04535 1.47291 1.23846 0.88868 0.96358 0.95650 1.21529 0.95387 0.90235 1.19321 1.17024 0.82182 0.85909 0.76106 1.90754 1.86649 1.14468 1.53194 1.48026 1.06047 1.08455 1.69813 1.22760 1.05795 0.78637 0.97696 1.21822 0.95878 1.00714 0.97617 1.21075 0.95250 0.95120 0.97570 1.21466 0.95950 0.95499 0.97348 0.93081 1.21465 0.95276 0.99929 0.96873 1.22024 0.99893 0.96858 0.98394 1.20580 0.86797 0.89336 0.98323 1.44344 1.20993 1.40637 1.27453 1.19450 0.91851 1.12067 1.15881 0.92043 1.25719 0.96354 0.99300 1.03250 1.70233 1.03399 1.45402 1.38811 0.85357 0.77153 0.78283 0.80260 1.21173 1.21707 1.19655 1.21082 0.93262 0.94282 0.88719 1.21942 1.00962 0.95640 0.97175 1.21754 0.84806 0.95774 0.98577 1.74084 1.12766 1.10804 1.11957 1.81980 0.93926 1.08317 1.23202 0.87516 0.84960 0.87327 0.74392 0.84437 0.90900 0.90913 0.93113 0.90589 0.92618 0.90130 0.93563 0.91376 0.93687 0.98725 0.94145 0.93349 0.97258 0.88779 0.92608 0.89894 0.89306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.07 11.51 127.77 1.47 1.54 16 2 N -0.35 -4.34 4.03 -368.58 -1.49 -5.82 16 3 C 0.11 1.52 11.32 83.85 0.95 2.47 16 4 C -0.12 -2.74 6.77 40.82 0.28 -2.46 16 5 C 0.60 15.25 7.69 86.69 0.67 15.91 16 6 O -0.57 -16.33 16.30 -4.00 -0.07 -16.39 16 7 N -0.59 -14.36 2.98 -823.51 -2.45 -16.81 16 8 C 0.07 1.79 6.28 86.22 0.54 2.33 16 9 C -0.12 -3.26 5.03 30.53 0.15 -3.10 16 10 C -0.07 -1.85 1.74 -10.77 -0.02 -1.87 16 11 C -0.08 -2.75 1.92 -10.72 -0.02 -2.77 16 12 H 0.05 1.86 8.14 -2.38 -0.02 1.84 16 13 C -0.10 -3.10 4.86 30.62 0.15 -2.95 16 14 C -0.13 -5.08 6.08 30.67 0.19 -4.89 16 15 C 0.18 8.76 5.34 86.36 0.46 9.22 16 16 N -0.61 -31.88 2.99 -699.09 -2.09 -33.97 16 17 C -0.26 -15.02 9.56 84.03 0.80 -14.21 16 18 H 0.06 3.46 7.91 -2.91 -0.02 3.44 16 19 C -0.05 -2.93 4.80 84.86 0.41 -2.53 16 20 N -0.93 -56.91 11.41 21.65 0.25 -56.66 16 21 Si 0.96 46.23 29.60 68.60 2.03 48.26 16 22 H -0.28 -13.46 7.11 99.48 0.71 -12.75 16 23 H -0.29 -13.91 7.11 99.48 0.71 -13.20 16 24 H -0.27 -12.58 7.11 99.48 0.71 -11.87 16 25 C 0.15 6.45 5.27 86.36 0.46 6.90 16 26 C -0.12 -2.65 5.05 30.67 0.15 -2.49 16 27 C 0.11 2.42 6.42 86.36 0.55 2.97 16 28 N -0.22 -5.42 8.64 -50.00 -0.43 -5.85 16 29 N -0.09 -2.03 13.78 37.02 0.51 -1.51 16 30 H 0.11 -0.14 8.14 -2.39 -0.02 -0.16 16 31 H 0.13 -0.71 8.14 -2.38 -0.02 -0.73 16 32 H 0.11 0.03 8.14 -2.39 -0.02 0.01 16 33 H 0.24 1.38 8.06 -2.91 -0.02 1.36 16 34 H 0.14 3.52 3.63 -101.82 -0.37 3.15 16 35 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 36 H 0.07 2.08 6.49 -2.39 -0.02 2.06 16 37 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 38 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 39 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 40 H 0.08 2.06 6.34 -2.39 -0.02 2.04 16 41 H 0.05 1.82 8.14 -2.38 -0.02 1.80 16 42 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 43 H 0.04 2.54 6.13 -2.39 -0.01 2.53 16 44 H -0.01 -0.28 8.14 -2.39 -0.02 -0.30 16 45 H 0.25 14.68 8.31 -92.71 -0.77 13.91 16 46 H 0.05 2.06 6.51 -2.38 -0.02 2.04 16 47 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 48 H 0.09 1.83 6.34 -2.39 -0.02 1.81 16 49 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 50 H 0.08 1.56 8.14 -2.38 -0.02 1.54 16 51 H 0.09 1.97 7.03 -2.39 -0.02 1.95 16 Total: -1.00 -77.53 391.44 4.02 -73.51 By element: Atomic # 1 Polarization: 10.62 SS G_CDS: 0.57 Total: 11.19 kcal Atomic # 6 Polarization: -3.13 SS G_CDS: 7.19 Total: 4.06 kcal Atomic # 7 Polarization: -114.92 SS G_CDS: -5.71 Total: -120.63 kcal Atomic # 8 Polarization: -16.33 SS G_CDS: -0.07 Total: -16.39 kcal Atomic # 14 Polarization: 46.23 SS G_CDS: 2.03 Total: 48.26 kcal Total: -77.53 4.02 -73.51 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000961368040.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.285 kcal (2) G-P(sol) polarization free energy of solvation -77.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.512 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds