Wall clock time and date at job start Wed Apr 1 2020 05:50:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 N 1.28714 * 126.03238 * 2 1 4 4 N 1.28514 * 110.63461 * 180.02562 * 3 2 1 5 5 C 1.33318 * 109.44142 * 359.72405 * 4 3 2 6 6 C 1.37008 * 106.37153 * 0.43018 * 5 4 3 7 7 C 1.47236 * 127.19056 * 179.84422 * 6 5 4 8 8 O 1.21619 * 119.99728 * 155.12839 * 7 6 5 9 9 N 1.34774 * 119.99742 * 335.12710 * 7 6 5 10 10 C 1.46921 * 120.63301 * 358.67445 * 9 7 6 11 11 C 1.52762 * 109.01114 * 233.58634 * 10 9 7 12 12 C 1.53049 * 109.38152 * 305.58829 * 11 10 9 13 13 C 1.53003 * 109.45056 * 181.25356 * 12 11 10 14 14 H 1.09000 * 109.49268 * 300.00560 * 13 12 11 15 15 C 1.53038 * 109.49677 * 60.09473 * 13 12 11 16 16 C 1.53037 * 109.53861 * 181.31476 * 15 13 12 17 17 C 1.53191 * 109.31398 * 298.64233 * 16 15 13 18 18 N 1.46925 * 108.77989 * 54.63205 * 17 16 15 19 19 C 1.36936 * 120.63481 * 126.36476 * 18 17 16 20 20 H 1.08003 * 120.00383 * 208.38409 * 19 18 17 21 21 C 1.38809 * 119.99565 * 28.39156 * 19 18 17 22 22 N 1.31622 * 120.00418 * 17.32238 * 21 19 18 23 23 Si 1.86800 * 119.99961 * 197.33128 * 21 19 18 24 24 H 1.48499 * 109.47596 * 94.91731 * 23 21 19 25 25 H 1.48496 * 109.47237 * 214.92136 * 23 21 19 26 26 H 1.48503 * 109.46973 * 334.91828 * 23 21 19 27 27 C 1.46930 * 118.73389 * 306.39531 * 18 17 16 28 28 C 1.53040 * 109.53566 * 61.23714 * 12 11 10 29 29 C 1.46931 * 120.62637 * 178.95609 * 9 7 6 30 30 H 1.08991 * 109.47276 * 264.41450 * 1 2 3 31 31 H 1.08998 * 109.46896 * 24.41878 * 1 2 3 32 32 H 1.09008 * 109.46784 * 144.41345 * 1 2 3 33 33 H 1.07997 * 126.81961 * 180.31553 * 5 4 3 34 34 H 1.08998 * 109.58965 * 353.41933 * 10 9 7 35 35 H 1.09001 * 109.58880 * 113.84561 * 10 9 7 36 36 H 1.09000 * 109.56722 * 185.55461 * 11 10 9 37 37 H 1.08996 * 109.36259 * 65.49362 * 11 10 9 38 38 H 1.08999 * 109.45422 * 301.21842 * 12 11 10 39 39 H 1.08998 * 109.46520 * 301.34552 * 15 13 12 40 40 H 1.09008 * 109.45404 * 61.29903 * 15 13 12 41 41 H 1.08997 * 109.50324 * 178.69002 * 16 15 13 42 42 H 1.08998 * 109.52124 * 58.60592 * 16 15 13 43 43 H 1.08997 * 109.58840 * 294.84566 * 17 16 15 44 44 H 1.08998 * 109.70541 * 174.48927 * 17 16 15 45 45 H 0.96994 * 119.99985 * 180.02562 * 22 21 19 46 46 H 1.08999 * 109.58458 * 293.81362 * 27 18 17 47 47 H 1.09005 * 109.70075 * 173.46151 * 27 18 17 48 48 H 1.09005 * 109.49595 * 178.68740 * 28 12 11 49 49 H 1.08993 * 109.52342 * 58.60629 * 28 12 11 50 50 H 1.09001 * 109.58403 * 246.15434 * 29 9 7 51 51 H 1.08994 * 109.58740 * 6.57721 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 7 2.2222 1.0409 0.0000 4 7 3.4612 0.6997 -0.0005 5 6 3.5552 -0.6302 0.0051 6 6 2.2712 -1.1081 -0.0005 7 6 1.8463 -2.5178 -0.0008 8 8 0.7538 -2.8237 0.4373 9 7 2.6681 -3.4692 -0.4865 10 6 3.9790 -3.1120 -1.0455 11 6 4.0964 -3.6969 -2.4518 12 6 3.8237 -5.2020 -2.4003 13 6 3.9715 -5.7949 -3.8030 14 1 3.2582 -5.3192 -4.4760 15 6 5.3944 -5.5535 -4.3122 16 6 5.5338 -6.1172 -5.7281 17 6 5.2802 -7.6277 -5.6994 18 7 3.9726 -7.8760 -5.0771 19 6 3.0256 -8.6279 -5.7196 20 1 1.9768 -8.4513 -5.5314 21 6 3.4135 -9.6171 -6.6128 22 7 4.6494 -10.0697 -6.5976 23 14 2.1817 -10.3059 -7.8366 24 1 2.3094 -9.5833 -9.1276 25 1 2.4502 -11.7508 -8.0493 26 1 0.8059 -10.1311 -7.3056 27 6 3.7003 -7.3017 -3.7524 28 6 2.4017 -5.4473 -1.8903 29 6 2.2675 -4.8828 -0.4725 30 1 -0.3633 -0.1000 1.0227 31 1 -0.3633 0.9357 -0.4248 32 1 -0.3633 -0.8358 -0.5981 33 1 4.4633 -1.2148 0.0110 34 1 4.0724 -2.0271 -1.0936 35 1 4.7688 -3.5212 -0.4155 36 1 5.1009 -3.5222 -2.8372 37 1 3.3672 -3.2173 -3.1047 38 1 4.5377 -5.6775 -1.7279 39 1 5.5985 -4.4829 -4.3258 40 1 6.1054 -6.0502 -3.6519 41 1 6.5404 -5.9244 -6.0991 42 1 4.8065 -5.6387 -6.3839 43 1 6.0607 -8.1183 -5.1177 44 1 5.2812 -8.0200 -6.7163 45 1 4.9205 -10.7607 -7.2220 46 1 4.3519 -7.7657 -3.0120 47 1 2.6586 -7.4766 -3.4831 48 1 2.2001 -6.5184 -1.8759 49 1 1.6882 -4.9515 -2.5483 50 1 2.9148 -5.4394 0.2052 51 1 1.2320 -4.9658 -0.1426 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000961368486.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:50:53 Heat of formation + Delta-G solvation = 73.037617 kcal Electronic energy + Delta-G solvation = -31527.956226 eV Core-core repulsion = 27464.569346 eV Total energy + Delta-G solvation = -4063.386880 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -44.47079 -41.30501 -39.81923 -38.13689 -35.93895 -35.43905 -34.13392 -33.07766 -32.34366 -31.51146 -30.55662 -29.06643 -27.23295 -26.69511 -24.99983 -24.61506 -23.67383 -22.97855 -22.76908 -21.47212 -20.55726 -20.38881 -18.75671 -18.41444 -18.19975 -17.87074 -17.16972 -16.85726 -16.34246 -15.94768 -15.59062 -15.47957 -15.27406 -15.04628 -14.85166 -14.66669 -14.51230 -14.35215 -14.13555 -14.03079 -13.76796 -13.66082 -13.43948 -13.36612 -12.98616 -12.79457 -12.73164 -12.39779 -12.29639 -12.17837 -12.14310 -11.98677 -11.75155 -11.66389 -11.51431 -11.33117 -11.30119 -11.22337 -10.93748 -10.72653 -10.54337 -10.47262 -9.74631 -8.63648 -7.86603 -5.31812 -0.16792 0.97685 1.16837 1.44370 1.46020 1.54824 1.79139 1.92167 2.50383 3.08695 3.26903 3.32791 3.65225 3.65523 3.78780 3.82712 3.89311 3.96385 4.14154 4.17217 4.25322 4.31346 4.36953 4.48318 4.49376 4.51584 4.56642 4.59473 4.64771 4.77832 4.82694 4.85255 4.91974 4.93726 4.99382 5.02603 5.12831 5.16448 5.19312 5.24424 5.27258 5.37406 5.40820 5.45238 5.53185 5.60392 5.64395 5.71815 5.84150 6.16103 6.40519 6.80529 7.16551 7.20101 7.90155 8.40641 9.18848 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.019683 B = 0.002305 C = 0.002198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1422.212210 B =12143.270734 C =12737.586718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.255 5.255 3 N -0.079 5.079 4 N -0.298 5.298 5 C 0.000 4.000 6 C -0.076 4.076 7 C 0.593 3.407 8 O -0.567 6.567 9 N -0.583 5.583 10 C 0.075 3.925 11 C -0.125 4.125 12 C -0.071 4.071 13 C -0.084 4.084 14 H 0.049 0.951 15 C -0.097 4.097 16 C -0.134 4.134 17 C 0.174 3.826 18 N -0.612 5.612 19 C -0.259 4.259 20 H 0.062 0.938 21 C -0.051 4.051 22 N -0.934 5.934 23 Si 0.962 3.038 24 H -0.287 1.287 25 H -0.294 1.294 26 H -0.269 1.269 27 C 0.151 3.849 28 C -0.126 4.126 29 C 0.120 3.880 30 H 0.109 0.891 31 H 0.127 0.873 32 H 0.102 0.898 33 H 0.243 0.757 34 H 0.115 0.885 35 H 0.108 0.892 36 H 0.100 0.900 37 H 0.054 0.946 38 H 0.084 0.916 39 H 0.083 0.917 40 H 0.058 0.942 41 H 0.066 0.934 42 H 0.043 0.957 43 H -0.005 1.005 44 H 0.044 0.956 45 H 0.249 0.751 46 H 0.012 0.988 47 H 0.048 0.952 48 H 0.076 0.924 49 H 0.052 0.948 50 H 0.094 0.906 51 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.039 19.333 14.746 24.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.052 5.052 3 N -0.059 5.059 4 N -0.159 5.159 5 C -0.160 4.160 6 C -0.211 4.211 7 C 0.379 3.621 8 O -0.447 6.447 9 N -0.314 5.314 10 C -0.046 4.046 11 C -0.163 4.163 12 C -0.090 4.090 13 C -0.104 4.104 14 H 0.067 0.933 15 C -0.134 4.134 16 C -0.173 4.173 17 C 0.049 3.951 18 N -0.336 5.336 19 C -0.390 4.390 20 H 0.080 0.920 21 C -0.247 4.247 22 N -0.581 5.581 23 Si 0.791 3.209 24 H -0.214 1.214 25 H -0.221 1.221 26 H -0.193 1.193 27 C 0.026 3.974 28 C -0.164 4.164 29 C -0.002 4.002 30 H 0.127 0.873 31 H 0.145 0.855 32 H 0.121 0.879 33 H 0.259 0.741 34 H 0.133 0.867 35 H 0.126 0.874 36 H 0.119 0.881 37 H 0.072 0.928 38 H 0.103 0.897 39 H 0.101 0.899 40 H 0.076 0.924 41 H 0.084 0.916 42 H 0.062 0.938 43 H 0.013 0.987 44 H 0.063 0.937 45 H 0.058 0.942 46 H 0.030 0.970 47 H 0.066 0.934 48 H 0.094 0.906 49 H 0.070 0.930 50 H 0.112 0.888 51 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -2.577 20.582 14.886 25.531 hybrid contribution -0.820 -2.194 -1.104 2.589 sum -3.397 18.388 13.783 23.230 Atomic orbital electron populations 1.22716 0.69834 1.07233 1.06747 1.47949 1.10892 1.03120 1.43222 1.78251 0.97098 1.12020 1.18581 1.74913 1.09360 1.13781 1.17894 1.24844 0.97773 0.91178 1.02237 1.22014 0.92228 0.90607 1.16229 1.16797 0.83949 0.82984 0.78327 1.90810 1.22285 1.82609 1.48950 1.47889 1.18487 1.06803 1.58250 1.22780 0.83473 1.03231 0.95128 1.21919 1.03643 0.94438 0.96288 1.21081 0.96535 0.95946 0.95423 1.21481 0.97087 0.95526 0.96344 0.93283 1.21465 0.96087 1.00843 0.95047 1.22030 1.00241 0.96875 0.98167 1.20591 0.85422 0.92159 0.96959 1.44328 1.13961 1.58670 1.16599 1.19478 0.88610 1.10363 1.20516 0.92003 1.25759 0.98199 0.97245 1.03470 1.70187 1.19022 1.30316 1.38525 0.85325 0.79262 0.76875 0.79472 1.21443 1.22113 1.19320 1.21111 0.97922 0.92510 0.85899 1.21951 0.97433 1.01477 0.95586 1.21726 1.02237 0.78783 0.97447 0.87309 0.85479 0.87920 0.74138 0.86739 0.87368 0.88143 0.92750 0.89723 0.89868 0.92355 0.91567 0.93820 0.98728 0.93718 0.94197 0.97005 0.93367 0.90578 0.92959 0.88837 0.89939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.85 10.65 127.77 1.36 2.21 16 2 N -0.25 -4.67 3.79 -356.75 -1.35 -6.02 16 3 N -0.08 -1.70 13.14 37.02 0.49 -1.22 16 4 N -0.30 -6.34 12.35 -57.50 -0.71 -7.05 16 5 C 0.00 0.00 9.78 84.18 0.82 0.82 16 6 C -0.08 -1.38 6.61 40.41 0.27 -1.11 16 7 C 0.59 11.74 7.56 86.61 0.65 12.40 16 8 O -0.57 -14.34 15.13 -4.09 -0.06 -14.40 16 9 N -0.58 -9.38 2.98 -823.85 -2.45 -11.83 16 10 C 0.07 0.80 5.41 86.22 0.47 1.27 16 11 C -0.12 -1.81 5.03 30.53 0.15 -1.66 16 12 C -0.07 -1.39 1.74 -10.76 -0.02 -1.41 16 13 C -0.08 -2.43 1.92 -10.72 -0.02 -2.45 16 14 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 15 C -0.10 -2.68 4.86 30.62 0.15 -2.53 16 16 C -0.13 -4.79 6.08 30.67 0.19 -4.60 16 17 C 0.17 8.33 5.31 86.36 0.46 8.79 16 18 N -0.61 -30.32 2.99 -699.11 -2.09 -32.41 16 19 C -0.26 -14.28 9.58 84.03 0.81 -13.48 16 20 H 0.06 3.35 7.89 -2.91 -0.02 3.33 16 21 C -0.05 -2.89 4.90 84.86 0.42 -2.47 16 22 N -0.93 -55.57 11.24 21.65 0.24 -55.33 16 23 Si 0.96 45.13 29.59 68.60 2.03 47.16 16 24 H -0.29 -13.34 7.11 99.48 0.71 -12.63 16 25 H -0.29 -13.86 7.11 99.48 0.71 -13.15 16 26 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 27 C 0.15 5.83 5.27 86.36 0.46 6.28 16 28 C -0.13 -2.58 5.05 30.67 0.15 -2.43 16 29 C 0.12 2.06 6.44 86.36 0.56 2.62 16 30 H 0.11 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.13 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.10 1.25 7.47 -2.38 -0.02 1.23 16 33 H 0.24 1.79 5.82 -2.91 -0.02 1.77 16 34 H 0.12 1.01 3.40 -2.39 -0.01 1.00 16 35 H 0.11 0.66 8.14 -2.39 -0.02 0.64 16 36 H 0.10 1.19 6.33 -2.39 -0.02 1.17 16 37 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 38 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 39 H 0.08 1.75 6.33 -2.39 -0.02 1.73 16 40 H 0.06 1.59 8.14 -2.38 -0.02 1.57 16 41 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 42 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 43 H -0.01 -0.27 8.14 -2.39 -0.02 -0.29 16 44 H 0.04 2.46 6.08 -2.39 -0.01 2.44 16 45 H 0.25 14.34 8.31 -92.71 -0.77 13.57 16 46 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 47 H 0.05 1.86 6.51 -2.38 -0.02 1.85 16 48 H 0.08 1.72 6.49 -2.38 -0.02 1.71 16 49 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 50 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 51 H 0.08 1.65 7.00 -2.39 -0.02 1.64 16 Total: -1.00 -73.99 386.20 3.90 -70.10 By element: Atomic # 1 Polarization: 7.80 SS G_CDS: 0.94 Total: 8.74 kcal Atomic # 6 Polarization: -4.61 SS G_CDS: 6.87 Total: 2.26 kcal Atomic # 7 Polarization: -107.97 SS G_CDS: -5.88 Total: -113.85 kcal Atomic # 8 Polarization: -14.34 SS G_CDS: -0.06 Total: -14.40 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 2.03 Total: 47.16 kcal Total: -73.99 3.90 -70.10 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000961368486.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.134 kcal (2) G-P(sol) polarization free energy of solvation -73.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.096 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds