Wall clock time and date at job start Wed Apr 1 2020 06:11:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 N 1.28527 * 124.43755 * 2 1 4 4 C 1.31139 * 109.05360 * 179.69138 * 3 2 1 5 5 C 1.40925 * 105.77820 * 0.42948 * 4 3 2 6 6 C 1.47792 * 127.23979 * 179.83938 * 5 4 3 7 7 O 1.21563 * 119.99741 * 353.10505 * 6 5 4 8 8 N 1.34774 * 120.00346 * 173.11374 * 6 5 4 9 9 C 1.46925 * 120.63220 * 174.03882 * 8 6 5 10 10 C 1.53195 * 108.77716 * 233.57933 * 9 8 6 11 11 C 1.53031 * 109.31335 * 305.36819 * 10 9 8 12 12 C 1.52997 * 109.45970 * 181.38388 * 11 10 9 13 13 H 1.09006 * 109.49309 * 299.86380 * 12 11 10 14 14 C 1.53041 * 109.49891 * 59.93033 * 12 11 10 15 15 C 1.53037 * 109.53660 * 181.32014 * 14 12 11 16 16 C 1.53194 * 109.31440 * 298.63263 * 15 14 12 17 17 N 1.46931 * 108.77674 * 54.63599 * 16 15 14 18 18 C 1.36930 * 120.62934 * 126.41430 * 17 16 15 19 19 H 1.08008 * 119.99665 * 214.52440 * 18 17 16 20 20 C 1.38807 * 120.00419 * 34.52188 * 18 17 16 21 21 N 1.31625 * 119.99899 * 5.78551 * 20 18 17 22 22 Si 1.86803 * 120.00193 * 185.78191 * 20 18 17 23 23 H 1.48495 * 109.47220 * 60.00386 * 22 20 18 24 24 H 1.48496 * 109.46971 * 180.02562 * 22 20 18 25 25 H 1.48501 * 109.47103 * 299.99788 * 22 20 18 26 26 C 1.46927 * 118.73553 * 306.39693 * 17 16 15 27 27 C 1.53046 * 109.54110 * 61.36009 * 11 10 9 28 28 C 1.46926 * 120.63031 * 354.01258 * 8 6 5 29 29 N 1.28590 * 124.44554 * 179.97438 * 2 1 3 30 30 H 1.08995 * 109.47006 * 270.02105 * 1 2 3 31 31 H 1.08997 * 109.46865 * 30.02847 * 1 2 3 32 32 H 1.08998 * 109.46597 * 150.01977 * 1 2 3 33 33 H 1.07997 * 127.10763 * 180.28866 * 4 3 2 34 34 H 1.08999 * 109.58851 * 353.37611 * 9 8 6 35 35 H 1.09008 * 109.58460 * 113.79412 * 9 8 6 36 36 H 1.08999 * 109.49021 * 65.32090 * 10 9 8 37 37 H 1.08997 * 109.49740 * 185.41133 * 10 9 8 38 38 H 1.08998 * 109.45048 * 301.35025 * 11 10 9 39 39 H 1.09000 * 109.45697 * 301.33882 * 14 12 11 40 40 H 1.08998 * 109.45870 * 61.29628 * 14 12 11 41 41 H 1.08998 * 109.50288 * 58.58213 * 15 14 12 42 42 H 1.09007 * 109.49923 * 178.65057 * 15 14 12 43 43 H 1.08996 * 109.59159 * 174.42777 * 16 15 14 44 44 H 1.09005 * 109.58702 * 294.84871 * 16 15 14 45 45 H 0.97000 * 120.00136 * 179.97438 * 21 20 18 46 46 H 1.08998 * 109.58494 * 293.81805 * 26 17 16 47 47 H 1.08999 * 109.58716 * 173.38995 * 26 17 16 48 48 H 1.08998 * 109.49633 * 178.68438 * 27 11 10 49 49 H 1.09001 * 109.49052 * 58.58535 * 27 11 10 50 50 H 1.09002 * 109.58664 * 246.20297 * 28 8 6 51 51 H 1.09002 * 109.58438 * 6.62613 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.1919 1.0600 0.0000 4 6 3.4562 0.7121 0.0067 5 6 3.4660 -0.6971 0.0008 6 6 4.6487 -1.5833 0.0014 7 8 5.7623 -1.1108 -0.1189 8 7 4.4927 -2.9153 0.1353 9 6 5.6431 -3.8203 0.0077 10 6 5.3147 -4.8908 -1.0378 11 6 4.0067 -5.5870 -0.6556 12 6 3.6933 -6.6804 -1.6790 13 1 3.5894 -6.2340 -2.6680 14 6 4.8310 -7.7039 -1.6974 15 6 4.5341 -8.7802 -2.7441 16 6 3.2372 -9.5055 -2.3713 17 7 2.1685 -8.5103 -2.2094 18 6 0.9913 -8.6323 -2.8980 19 1 0.4718 -7.7494 -3.2401 20 6 0.4657 -9.8907 -3.1566 21 7 1.0360 -10.9603 -2.6435 22 14 -1.0512 -10.0664 -4.2325 23 1 -0.7687 -9.5118 -5.5807 24 1 -1.4093 -11.5025 -4.3526 25 1 -2.1819 -9.3245 -3.6190 26 6 2.3869 -7.3818 -1.2941 27 6 2.8685 -4.5640 -0.6378 28 6 3.1692 -3.4899 0.4121 29 7 2.1924 -1.0604 0.0005 30 1 -0.3633 0.0004 1.0276 31 1 -0.3633 0.8897 -0.5143 32 1 -0.3632 -0.8902 -0.5135 33 1 4.3129 1.3697 0.0128 34 1 6.5191 -3.2551 -0.3106 35 1 5.8419 -4.2962 0.9680 36 1 5.2054 -4.4225 -2.0159 37 1 6.1204 -5.6241 -1.0730 38 1 4.1087 -6.0338 0.3333 39 1 5.7662 -7.2028 -1.9470 40 1 4.9185 -8.1673 -0.7147 41 1 4.4219 -8.3146 -3.7232 42 1 5.3560 -9.4957 -2.7736 43 1 2.9687 -10.2044 -3.1634 44 1 3.3773 -10.0468 -1.4356 45 1 0.6685 -11.8397 -2.8239 46 1 2.4577 -7.7499 -0.2706 47 1 1.5574 -6.6794 -1.3755 48 1 1.9331 -5.0649 -0.3884 49 1 2.7822 -4.0988 -1.6198 50 1 3.1662 -3.9389 1.4054 51 1 2.4128 -2.7067 0.3607 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000961418517.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:11:38 Heat of formation + Delta-G solvation = 99.340225 kcal Electronic energy + Delta-G solvation = -31498.482499 eV Core-core repulsion = 27436.236186 eV Total energy + Delta-G solvation = -4062.246313 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -43.99705 -40.22247 -38.47822 -36.68715 -34.32488 -34.00602 -33.09888 -32.18606 -31.22916 -30.24523 -29.23113 -28.30529 -25.56068 -25.24255 -23.99822 -23.26216 -22.43222 -21.60498 -21.52185 -20.39118 -19.31115 -18.97936 -17.68492 -17.40313 -17.15653 -16.61087 -16.04450 -15.33075 -15.12377 -14.88146 -14.30773 -14.25711 -14.11198 -13.81333 -13.69036 -13.51165 -13.31353 -13.20276 -13.07685 -12.81250 -12.64438 -12.40122 -12.16508 -12.01877 -11.71471 -11.44226 -11.22550 -10.91429 -10.88964 -10.80921 -10.76674 -10.55409 -10.42210 -10.23855 -10.12809 -10.04232 -9.99058 -9.82855 -9.76805 -9.34886 -9.22021 -8.70758 -8.44553 -6.51260 -5.75801 -3.27296 0.98363 1.64477 1.78896 2.80282 3.03020 3.37341 3.42649 3.43313 3.58107 4.30499 4.48587 4.56969 4.64801 4.69204 4.86037 4.88690 4.91480 4.96301 5.13004 5.30370 5.32156 5.39932 5.40837 5.51985 5.56879 5.65909 5.70205 5.74868 5.82289 5.84195 5.91835 6.03036 6.05769 6.16334 6.27849 6.30868 6.36098 6.47467 6.52030 6.57346 6.58567 6.71900 6.78144 6.92764 6.98685 7.10980 7.20374 7.48245 7.74673 7.76166 7.81080 7.95842 8.53574 9.26847 9.87623 10.48051 11.31668 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.012696 B = 0.002715 C = 0.002298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2204.864302 B =10310.357555 C =12182.579251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.100 3.900 2 N -0.145 5.145 3 N -0.289 5.289 4 C 0.034 3.966 5 C -0.040 4.040 6 C 0.607 3.393 7 O -0.535 6.535 8 N -0.592 5.592 9 C 0.113 3.887 10 C -0.129 4.129 11 C -0.080 4.080 12 C -0.097 4.097 13 H 0.064 0.936 14 C -0.103 4.103 15 C -0.144 4.144 16 C 0.172 3.828 17 N -0.592 5.592 18 C -0.253 4.253 19 H 0.060 0.940 20 C 0.007 3.993 21 N -0.905 5.905 22 Si 0.903 3.097 23 H -0.284 1.284 24 H -0.290 1.290 25 H -0.282 1.282 26 C 0.154 3.846 27 C -0.125 4.125 28 C 0.076 3.924 29 N -0.245 5.245 30 H 0.095 0.905 31 H 0.106 0.894 32 H 0.109 0.891 33 H 0.208 0.792 34 H 0.090 0.910 35 H 0.069 0.931 36 H 0.065 0.935 37 H 0.080 0.920 38 H 0.069 0.931 39 H 0.045 0.955 40 H 0.051 0.949 41 H 0.051 0.949 42 H 0.045 0.955 43 H 0.084 0.916 44 H 0.015 0.985 45 H 0.254 0.746 46 H 0.014 0.986 47 H 0.052 0.948 48 H 0.082 0.918 49 H 0.064 0.936 50 H 0.065 0.935 51 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.567 19.935 7.471 21.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 N -0.047 5.047 3 N -0.129 5.129 4 C -0.149 4.149 5 C -0.202 4.202 6 C 0.392 3.608 7 O -0.410 6.410 8 N -0.324 5.324 9 C -0.009 4.009 10 C -0.167 4.167 11 C -0.100 4.100 12 C -0.117 4.117 13 H 0.082 0.918 14 C -0.141 4.141 15 C -0.183 4.183 16 C 0.046 3.954 17 N -0.315 5.315 18 C -0.383 4.383 19 H 0.078 0.922 20 C -0.192 4.192 21 N -0.549 5.549 22 Si 0.733 3.267 23 H -0.210 1.210 24 H -0.216 1.216 25 H -0.209 1.209 26 C 0.028 3.972 27 C -0.163 4.163 28 C -0.047 4.047 29 N -0.093 5.093 30 H 0.113 0.887 31 H 0.125 0.875 32 H 0.127 0.873 33 H 0.225 0.775 34 H 0.109 0.891 35 H 0.088 0.912 36 H 0.083 0.917 37 H 0.098 0.902 38 H 0.087 0.913 39 H 0.064 0.936 40 H 0.070 0.930 41 H 0.069 0.931 42 H 0.064 0.936 43 H 0.103 0.897 44 H 0.033 0.967 45 H 0.064 0.936 46 H 0.032 0.968 47 H 0.070 0.930 48 H 0.100 0.900 49 H 0.083 0.917 50 H 0.083 0.917 51 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 2.709 19.998 7.379 21.487 hybrid contribution -0.023 -0.321 -0.552 0.639 sum 2.686 19.676 6.826 20.999 Atomic orbital electron populations 1.22321 0.69565 1.06541 1.05501 1.48297 1.09388 0.99417 1.47566 1.74028 1.03845 1.15541 1.19496 1.24818 0.94306 0.93565 1.02254 1.23115 0.91229 0.94795 1.11075 1.16746 0.85910 0.81316 0.76850 1.90794 1.24156 1.74943 1.51127 1.47950 1.10559 1.04907 1.68948 1.21731 0.88420 0.91077 0.99655 1.22038 0.98793 0.97269 0.98631 1.21174 0.93710 0.95174 0.99901 1.21677 0.97673 0.94317 0.98042 0.91803 1.21476 0.96721 0.96611 0.99268 1.22209 1.00035 0.97798 0.98291 1.20773 0.84161 0.90785 0.99650 1.43957 1.14036 1.25566 1.47922 1.19089 0.98711 0.91843 1.28664 0.92197 1.25255 0.97915 0.96317 0.99722 1.69947 1.41177 0.97593 1.46196 0.86369 0.83213 0.76690 0.80426 1.20988 1.21607 1.20878 1.20954 0.93608 0.90187 0.92449 1.21950 0.99478 0.95787 0.99087 1.22693 0.84375 0.99076 0.98559 1.74175 1.03096 1.14491 1.17572 0.88668 0.87526 0.87252 0.77530 0.89113 0.91246 0.91671 0.90166 0.91297 0.93643 0.92998 0.93057 0.93639 0.89741 0.96661 0.93581 0.96780 0.92997 0.89964 0.91742 0.91685 0.85495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.42 11.55 59.85 0.69 1.12 16 2 N -0.14 -1.33 4.35 -16.64 -0.07 -1.40 16 3 N -0.29 -2.94 12.01 30.90 0.37 -2.57 16 4 C 0.03 0.35 12.05 -16.83 -0.20 0.15 16 5 C -0.04 -0.47 6.92 -82.68 -0.57 -1.04 16 6 C 0.61 8.03 7.70 -12.35 -0.10 7.93 16 7 O -0.53 -8.20 16.40 5.31 0.09 -8.11 16 8 N -0.59 -7.17 2.97 -173.90 -0.52 -7.69 16 9 C 0.11 1.28 6.41 -3.71 -0.02 1.25 16 10 C -0.13 -1.53 5.04 -26.61 -0.13 -1.66 16 11 C -0.08 -1.05 1.74 -90.58 -0.16 -1.21 16 12 C -0.10 -1.61 1.92 -90.50 -0.17 -1.78 16 13 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 14 C -0.10 -1.71 4.85 -26.69 -0.13 -1.84 16 15 C -0.14 -2.79 6.08 -26.61 -0.16 -2.95 16 16 C 0.17 4.14 5.22 -3.71 -0.02 4.12 16 17 N -0.59 -14.79 2.98 -172.31 -0.51 -15.30 16 18 C -0.25 -6.92 9.56 -15.06 -0.14 -7.06 16 19 H 0.06 1.61 7.84 -52.48 -0.41 1.20 16 20 C 0.01 0.19 5.14 -17.43 -0.09 0.10 16 21 N -0.91 -26.23 11.02 55.49 0.61 -25.62 16 22 Si 0.90 21.56 29.56 -169.99 -5.02 16.54 16 23 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 24 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 25 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 26 C 0.15 3.14 5.28 -3.71 -0.02 3.12 16 27 C -0.12 -1.55 5.05 -26.61 -0.13 -1.69 16 28 C 0.08 0.85 6.33 -3.71 -0.02 0.83 16 29 N -0.25 -2.66 8.57 33.42 0.29 -2.37 16 30 H 0.09 0.25 8.14 -51.93 -0.42 -0.18 16 31 H 0.11 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.11 0.36 8.14 -51.93 -0.42 -0.07 16 33 H 0.21 1.64 8.06 -52.49 -0.42 1.21 16 34 H 0.09 1.07 7.04 -51.93 -0.37 0.70 16 35 H 0.07 0.71 8.14 -51.92 -0.42 0.28 16 36 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 37 H 0.08 0.90 6.33 -51.93 -0.33 0.57 16 38 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.04 0.66 6.33 -51.93 -0.33 0.33 16 40 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 41 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 42 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 43 H 0.08 2.29 6.20 -51.93 -0.32 1.96 16 44 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 45 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 46 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 47 H 0.05 1.03 6.52 -51.93 -0.34 0.70 16 48 H 0.08 1.05 6.50 -51.93 -0.34 0.71 16 49 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 50 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 51 H 0.13 1.40 3.79 -99.19 -0.38 1.02 16 LS Contribution 390.92 15.07 5.89 5.89 Total: -1.00 -33.12 390.92 -8.55 -41.68 By element: Atomic # 1 Polarization: 7.86 SS G_CDS: -8.28 Total: -0.42 kcal Atomic # 6 Polarization: 0.77 SS G_CDS: -1.39 Total: -0.62 kcal Atomic # 7 Polarization: -55.11 SS G_CDS: 0.17 Total: -54.95 kcal Atomic # 8 Polarization: -8.20 SS G_CDS: 0.09 Total: -8.11 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -33.12 -8.55 -41.68 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000961418517.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.019 kcal (2) G-P(sol) polarization free energy of solvation -33.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.678 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds