Wall clock time and date at job start Wed Apr 1 2020 06:11:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 N 1.28527 * 124.43755 * 2 1 4 4 C 1.31139 * 109.05360 * 179.69138 * 3 2 1 5 5 C 1.40925 * 105.77820 * 0.42948 * 4 3 2 6 6 C 1.47792 * 127.23979 * 179.83938 * 5 4 3 7 7 O 1.21563 * 119.99741 * 353.10505 * 6 5 4 8 8 N 1.34774 * 120.00346 * 173.11374 * 6 5 4 9 9 C 1.46925 * 120.63220 * 174.03882 * 8 6 5 10 10 C 1.53195 * 108.77716 * 233.57933 * 9 8 6 11 11 C 1.53031 * 109.31335 * 305.36819 * 10 9 8 12 12 C 1.52997 * 109.45970 * 181.38388 * 11 10 9 13 13 H 1.09006 * 109.49309 * 299.86380 * 12 11 10 14 14 C 1.53041 * 109.49891 * 59.93033 * 12 11 10 15 15 C 1.53037 * 109.53660 * 181.32014 * 14 12 11 16 16 C 1.53194 * 109.31440 * 298.63263 * 15 14 12 17 17 N 1.46931 * 108.77674 * 54.63599 * 16 15 14 18 18 C 1.36930 * 120.62934 * 126.41430 * 17 16 15 19 19 H 1.08008 * 119.99665 * 214.52440 * 18 17 16 20 20 C 1.38807 * 120.00419 * 34.52188 * 18 17 16 21 21 N 1.31625 * 119.99899 * 5.78551 * 20 18 17 22 22 Si 1.86803 * 120.00193 * 185.78191 * 20 18 17 23 23 H 1.48495 * 109.47220 * 60.00386 * 22 20 18 24 24 H 1.48496 * 109.46971 * 180.02562 * 22 20 18 25 25 H 1.48501 * 109.47103 * 299.99788 * 22 20 18 26 26 C 1.46927 * 118.73553 * 306.39693 * 17 16 15 27 27 C 1.53046 * 109.54110 * 61.36009 * 11 10 9 28 28 C 1.46926 * 120.63031 * 354.01258 * 8 6 5 29 29 N 1.28590 * 124.44554 * 179.97438 * 2 1 3 30 30 H 1.08995 * 109.47006 * 270.02105 * 1 2 3 31 31 H 1.08997 * 109.46865 * 30.02847 * 1 2 3 32 32 H 1.08998 * 109.46597 * 150.01977 * 1 2 3 33 33 H 1.07997 * 127.10763 * 180.28866 * 4 3 2 34 34 H 1.08999 * 109.58851 * 353.37611 * 9 8 6 35 35 H 1.09008 * 109.58460 * 113.79412 * 9 8 6 36 36 H 1.08999 * 109.49021 * 65.32090 * 10 9 8 37 37 H 1.08997 * 109.49740 * 185.41133 * 10 9 8 38 38 H 1.08998 * 109.45048 * 301.35025 * 11 10 9 39 39 H 1.09000 * 109.45697 * 301.33882 * 14 12 11 40 40 H 1.08998 * 109.45870 * 61.29628 * 14 12 11 41 41 H 1.08998 * 109.50288 * 58.58213 * 15 14 12 42 42 H 1.09007 * 109.49923 * 178.65057 * 15 14 12 43 43 H 1.08996 * 109.59159 * 174.42777 * 16 15 14 44 44 H 1.09005 * 109.58702 * 294.84871 * 16 15 14 45 45 H 0.97000 * 120.00136 * 179.97438 * 21 20 18 46 46 H 1.08998 * 109.58494 * 293.81805 * 26 17 16 47 47 H 1.08999 * 109.58716 * 173.38995 * 26 17 16 48 48 H 1.08998 * 109.49633 * 178.68438 * 27 11 10 49 49 H 1.09001 * 109.49052 * 58.58535 * 27 11 10 50 50 H 1.09002 * 109.58664 * 246.20297 * 28 8 6 51 51 H 1.09002 * 109.58438 * 6.62613 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.1919 1.0600 0.0000 4 6 3.4562 0.7121 0.0067 5 6 3.4660 -0.6971 0.0008 6 6 4.6487 -1.5833 0.0014 7 8 5.7623 -1.1108 -0.1189 8 7 4.4927 -2.9153 0.1353 9 6 5.6431 -3.8203 0.0077 10 6 5.3147 -4.8908 -1.0378 11 6 4.0067 -5.5870 -0.6556 12 6 3.6933 -6.6804 -1.6790 13 1 3.5894 -6.2340 -2.6680 14 6 4.8310 -7.7039 -1.6974 15 6 4.5341 -8.7802 -2.7441 16 6 3.2372 -9.5055 -2.3713 17 7 2.1685 -8.5103 -2.2094 18 6 0.9913 -8.6323 -2.8980 19 1 0.4718 -7.7494 -3.2401 20 6 0.4657 -9.8907 -3.1566 21 7 1.0360 -10.9603 -2.6435 22 14 -1.0512 -10.0664 -4.2325 23 1 -0.7687 -9.5118 -5.5807 24 1 -1.4093 -11.5025 -4.3526 25 1 -2.1819 -9.3245 -3.6190 26 6 2.3869 -7.3818 -1.2941 27 6 2.8685 -4.5640 -0.6378 28 6 3.1692 -3.4899 0.4121 29 7 2.1924 -1.0604 0.0005 30 1 -0.3633 0.0004 1.0276 31 1 -0.3633 0.8897 -0.5143 32 1 -0.3632 -0.8902 -0.5135 33 1 4.3129 1.3697 0.0128 34 1 6.5191 -3.2551 -0.3106 35 1 5.8419 -4.2962 0.9680 36 1 5.2054 -4.4225 -2.0159 37 1 6.1204 -5.6241 -1.0730 38 1 4.1087 -6.0338 0.3333 39 1 5.7662 -7.2028 -1.9470 40 1 4.9185 -8.1673 -0.7147 41 1 4.4219 -8.3146 -3.7232 42 1 5.3560 -9.4957 -2.7736 43 1 2.9687 -10.2044 -3.1634 44 1 3.3773 -10.0468 -1.4356 45 1 0.6685 -11.8397 -2.8239 46 1 2.4577 -7.7499 -0.2706 47 1 1.5574 -6.6794 -1.3755 48 1 1.9331 -5.0649 -0.3884 49 1 2.7822 -4.0988 -1.6198 50 1 3.1662 -3.9389 1.4054 51 1 2.4128 -2.7067 0.3607 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000961418517.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:11:36 Heat of formation + Delta-G solvation = 79.161933 kcal Electronic energy + Delta-G solvation = -31499.357496 eV Core-core repulsion = 27436.236186 eV Total energy + Delta-G solvation = -4063.121310 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -44.74834 -41.22936 -39.79180 -38.02699 -35.62637 -34.83150 -34.12766 -33.57561 -32.48247 -31.78124 -30.61199 -28.96222 -27.22933 -26.50475 -25.06292 -24.42828 -23.36383 -22.93567 -22.78451 -21.57625 -20.56730 -20.27216 -18.65188 -18.42041 -18.15812 -17.93198 -17.02315 -16.83442 -16.32343 -15.81741 -15.78400 -15.53633 -15.22852 -15.02727 -14.91595 -14.72697 -14.55351 -14.18423 -13.97986 -13.92143 -13.67666 -13.63438 -13.48502 -13.10066 -12.95734 -12.90438 -12.73903 -12.47323 -12.33504 -12.17767 -12.03469 -11.94009 -11.70864 -11.60804 -11.49283 -11.43845 -11.33203 -11.20952 -10.87668 -10.59749 -10.52667 -10.49471 -9.66953 -8.52724 -7.84280 -5.39480 0.14926 0.86742 1.20765 1.46003 1.48047 1.54707 1.93354 2.09829 2.50703 2.81780 3.30771 3.51923 3.66150 3.83654 3.86417 3.95271 3.98421 4.17758 4.25180 4.29409 4.31909 4.35677 4.38514 4.47851 4.48108 4.57229 4.60774 4.64649 4.67609 4.80046 4.82690 4.88338 4.94100 4.98944 5.03145 5.05997 5.12906 5.15466 5.20419 5.25888 5.36064 5.42135 5.44033 5.54386 5.59718 5.63538 5.71206 5.77088 5.84727 6.25681 6.45568 6.88821 7.09023 7.19486 7.89791 8.43827 9.20319 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.012696 B = 0.002715 C = 0.002298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2204.864302 B =10310.357555 C =12182.579251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.136 5.136 3 N -0.296 5.296 4 C 0.030 3.970 5 C -0.064 4.064 6 C 0.605 3.395 7 O -0.563 6.563 8 N -0.592 5.592 9 C 0.114 3.886 10 C -0.120 4.120 11 C -0.072 4.072 12 C -0.083 4.083 13 H 0.049 0.951 14 C -0.098 4.098 15 C -0.135 4.135 16 C 0.177 3.823 17 N -0.613 5.613 18 C -0.265 4.265 19 H 0.061 0.939 20 C -0.047 4.047 21 N -0.936 5.936 22 Si 0.968 3.032 23 H -0.278 1.278 24 H -0.294 1.294 25 H -0.273 1.273 26 C 0.154 3.846 27 C -0.119 4.119 28 C 0.082 3.918 29 N -0.250 5.250 30 H 0.115 0.885 31 H 0.124 0.876 32 H 0.119 0.881 33 H 0.224 0.776 34 H 0.086 0.914 35 H 0.087 0.913 36 H 0.054 0.946 37 H 0.093 0.907 38 H 0.078 0.922 39 H 0.078 0.922 40 H 0.055 0.945 41 H 0.043 0.957 42 H 0.064 0.936 43 H 0.047 0.953 44 H -0.007 1.007 45 H 0.250 0.750 46 H 0.010 0.990 47 H 0.051 0.949 48 H 0.078 0.922 49 H 0.052 0.948 50 H 0.078 0.922 51 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.508 21.558 8.004 23.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.040 5.040 3 N -0.137 5.137 4 C -0.152 4.152 5 C -0.224 4.224 6 C 0.391 3.609 7 O -0.441 6.441 8 N -0.324 5.324 9 C -0.008 4.008 10 C -0.158 4.158 11 C -0.091 4.091 12 C -0.104 4.104 13 H 0.068 0.932 14 C -0.136 4.136 15 C -0.174 4.174 16 C 0.052 3.948 17 N -0.336 5.336 18 C -0.395 4.395 19 H 0.079 0.921 20 C -0.243 4.243 21 N -0.582 5.582 22 Si 0.796 3.204 23 H -0.204 1.204 24 H -0.220 1.220 25 H -0.199 1.199 26 C 0.028 3.972 27 C -0.158 4.158 28 C -0.041 4.041 29 N -0.099 5.099 30 H 0.134 0.866 31 H 0.143 0.857 32 H 0.138 0.862 33 H 0.240 0.760 34 H 0.105 0.895 35 H 0.105 0.895 36 H 0.073 0.927 37 H 0.112 0.888 38 H 0.096 0.904 39 H 0.096 0.904 40 H 0.074 0.926 41 H 0.062 0.938 42 H 0.083 0.917 43 H 0.065 0.935 44 H 0.011 0.989 45 H 0.059 0.941 46 H 0.028 0.972 47 H 0.070 0.930 48 H 0.096 0.904 49 H 0.071 0.929 50 H 0.096 0.904 51 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 2.651 21.643 7.923 23.199 hybrid contribution -0.098 -0.805 -0.704 1.074 sum 2.553 20.838 7.219 22.200 Atomic orbital electron populations 1.22809 0.67053 1.08004 1.07325 1.48817 1.10708 0.98782 1.45702 1.74038 1.03871 1.15880 1.19881 1.25138 0.94983 0.93372 1.01746 1.22999 0.91245 0.95214 1.12965 1.16929 0.85976 0.81687 0.76338 1.90768 1.25255 1.75468 1.52575 1.48044 1.11046 1.04817 1.68446 1.21775 0.88045 0.90692 1.00277 1.21954 0.98189 0.97478 0.98227 1.21080 0.94733 0.94231 0.99020 1.21478 0.95656 0.94931 0.98287 0.93232 1.21462 0.97966 0.95733 0.98401 1.22054 0.97902 0.98660 0.98748 1.20573 0.86354 0.90680 0.97229 1.44241 1.13795 1.26707 1.48846 1.19426 0.99435 0.91995 1.28674 0.92093 1.26008 1.00826 0.96054 1.01392 1.70127 1.42565 0.97732 1.47779 0.85346 0.79961 0.76291 0.78848 1.20412 1.21992 1.19861 1.21086 0.95811 0.88936 0.91323 1.21869 0.99067 0.95882 0.98947 1.22680 0.84166 0.98701 0.98542 1.74087 1.02937 1.15214 1.17701 0.86633 0.85736 0.86207 0.75978 0.89519 0.89527 0.92729 0.88847 0.90414 0.90405 0.92626 0.93812 0.91699 0.93463 0.98870 0.94137 0.97184 0.93027 0.90393 0.92945 0.90421 0.85148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.53 11.55 127.77 1.48 2.00 16 2 N -0.14 -2.26 4.35 -206.55 -0.90 -3.16 16 3 N -0.30 -5.58 12.01 -56.16 -0.67 -6.25 16 4 C 0.03 0.59 12.05 85.45 1.03 1.62 16 5 C -0.06 -1.44 6.92 42.24 0.29 -1.15 16 6 C 0.60 15.46 7.70 86.77 0.67 16.13 16 7 O -0.56 -16.97 16.40 -3.91 -0.06 -17.03 16 8 N -0.59 -13.41 2.97 -822.37 -2.44 -15.85 16 9 C 0.11 2.32 6.41 86.36 0.55 2.87 16 10 C -0.12 -2.55 5.04 30.67 0.15 -2.39 16 11 C -0.07 -1.72 1.74 -10.77 -0.02 -1.74 16 12 C -0.08 -2.65 1.92 -10.72 -0.02 -2.67 16 13 H 0.05 1.74 8.14 -2.38 -0.02 1.72 16 14 C -0.10 -3.04 4.85 30.62 0.15 -2.89 16 15 C -0.13 -5.10 6.08 30.67 0.19 -4.92 16 16 C 0.18 8.74 5.22 86.36 0.45 9.19 16 17 N -0.61 -31.04 2.98 -699.08 -2.08 -33.13 16 18 C -0.26 -14.69 9.56 84.03 0.80 -13.89 16 19 H 0.06 3.29 7.84 -2.91 -0.02 3.27 16 20 C -0.05 -2.66 5.14 84.86 0.44 -2.23 16 21 N -0.94 -55.86 11.02 21.65 0.24 -55.62 16 22 Si 0.97 44.85 29.56 68.60 2.03 46.88 16 23 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 24 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 25 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 26 C 0.15 6.21 5.28 86.36 0.46 6.66 16 27 C -0.12 -2.79 5.05 30.67 0.15 -2.64 16 28 C 0.08 1.68 6.33 86.36 0.55 2.23 16 29 N -0.25 -5.06 8.57 -48.17 -0.41 -5.47 16 30 H 0.12 0.29 8.14 -2.39 -0.02 0.27 16 31 H 0.12 0.34 8.14 -2.39 -0.02 0.32 16 32 H 0.12 0.51 8.14 -2.39 -0.02 0.49 16 33 H 0.22 3.33 8.06 -2.91 -0.02 3.31 16 34 H 0.09 1.89 7.04 -2.39 -0.02 1.88 16 35 H 0.09 1.50 8.14 -2.38 -0.02 1.48 16 36 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 37 H 0.09 1.75 6.33 -2.39 -0.02 1.74 16 38 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 39 H 0.08 1.96 6.33 -2.39 -0.02 1.95 16 40 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 41 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 42 H 0.06 2.19 8.14 -2.38 -0.02 2.17 16 43 H 0.05 2.66 6.20 -2.39 -0.01 2.64 16 44 H -0.01 -0.36 8.14 -2.38 -0.02 -0.38 16 45 H 0.25 14.44 8.31 -92.71 -0.77 13.67 16 46 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 47 H 0.05 2.05 6.52 -2.39 -0.02 2.03 16 48 H 0.08 1.89 6.50 -2.39 -0.02 1.88 16 49 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 50 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 51 H 0.13 2.67 3.79 -63.53 -0.24 2.43 16 Total: -1.00 -72.93 390.92 3.71 -69.22 By element: Atomic # 1 Polarization: 13.54 SS G_CDS: 0.70 Total: 14.24 kcal Atomic # 6 Polarization: -1.13 SS G_CDS: 7.32 Total: 6.18 kcal Atomic # 7 Polarization: -113.22 SS G_CDS: -6.27 Total: -119.49 kcal Atomic # 8 Polarization: -16.97 SS G_CDS: -0.06 Total: -17.03 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 2.03 Total: 46.88 kcal Total: -72.93 3.71 -69.22 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000961418517.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.380 kcal (2) G-P(sol) polarization free energy of solvation -72.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.218 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds