Wall clock time and date at job start Wed Apr 1 2020 06:11:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 N 1.28522 * 124.44570 * 2 1 4 4 C 1.31126 * 109.05975 * 179.69213 * 3 2 1 5 5 C 1.40923 * 105.77945 * 0.42819 * 4 3 2 6 6 C 1.47802 * 127.23943 * 179.83742 * 5 4 3 7 7 O 1.21558 * 120.00182 * 6.19639 * 6 5 4 8 8 N 1.34781 * 119.99683 * 186.20168 * 6 5 4 9 9 C 1.46927 * 120.62396 * 175.37175 * 8 6 5 10 10 C 1.53194 * 108.77328 * 233.58005 * 9 8 6 11 11 C 1.53034 * 109.31677 * 305.36870 * 10 9 8 12 12 C 1.53003 * 109.46206 * 181.38316 * 11 10 9 13 13 H 1.08998 * 109.49484 * 299.90960 * 12 11 10 14 14 C 1.53037 * 109.52422 * 179.82719 * 12 11 10 15 15 C 1.53040 * 109.53769 * 178.66993 * 14 12 11 16 16 C 1.53191 * 109.31385 * 61.36422 * 15 14 12 17 17 N 1.46957 * 108.88813 * 305.44512 * 16 15 14 18 18 C 1.36933 * 120.65309 * 233.52692 * 17 16 15 19 19 H 1.08005 * 119.99727 * 148.82646 * 18 17 16 20 20 C 1.38809 * 120.00312 * 328.83294 * 18 17 16 21 21 N 1.31620 * 119.99757 * 350.23060 * 20 18 17 22 22 Si 1.86800 * 120.00237 * 170.23044 * 20 18 17 23 23 H 1.48503 * 109.47176 * 90.00046 * 22 20 18 24 24 H 1.48501 * 109.47307 * 209.99895 * 22 20 18 25 25 H 1.48505 * 109.47193 * 330.00327 * 22 20 18 26 26 C 1.46932 * 118.71739 * 53.35406 * 17 16 15 27 27 C 1.53044 * 109.52694 * 61.37043 * 11 10 9 28 28 C 1.46918 * 120.63502 * 355.34724 * 8 6 5 29 29 N 1.28595 * 124.44415 * 179.97438 * 2 1 3 30 30 H 1.08996 * 109.47281 * 270.02435 * 1 2 3 31 31 H 1.08996 * 109.47111 * 30.03018 * 1 2 3 32 32 H 1.09005 * 109.46915 * 150.02498 * 1 2 3 33 33 H 1.08004 * 127.11339 * 180.29172 * 4 3 2 34 34 H 1.09009 * 109.58488 * 113.80228 * 9 8 6 35 35 H 1.08999 * 109.59256 * 353.37512 * 9 8 6 36 36 H 1.09005 * 109.49288 * 185.41359 * 10 9 8 37 37 H 1.08995 * 109.49330 * 65.32463 * 10 9 8 38 38 H 1.08999 * 109.46183 * 301.35931 * 11 10 9 39 39 H 1.09005 * 109.46297 * 298.69094 * 14 12 11 40 40 H 1.09002 * 109.46329 * 58.66293 * 14 12 11 41 41 H 1.09000 * 109.49664 * 181.32121 * 15 14 12 42 42 H 1.09001 * 109.49603 * 301.41462 * 15 14 12 43 43 H 1.09001 * 109.58251 * 65.15752 * 16 15 14 44 44 H 1.08996 * 109.58414 * 185.43521 * 16 15 14 45 45 H 0.97005 * 119.99568 * 180.02562 * 21 20 18 46 46 H 1.08999 * 109.58963 * 186.77995 * 26 17 16 47 47 H 1.09007 * 109.58097 * 66.49903 * 26 17 16 48 48 H 1.09004 * 109.49805 * 58.57868 * 27 11 10 49 49 H 1.08993 * 109.49789 * 178.67737 * 27 11 10 50 50 H 1.08997 * 109.59137 * 246.20563 * 28 8 6 51 51 H 1.09000 * 109.58603 * 6.62817 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.1920 1.0599 0.0000 4 6 3.4562 0.7120 0.0067 5 6 3.4659 -0.6972 0.0009 6 6 4.6487 -1.5835 0.0014 7 8 5.7623 -1.1109 0.1210 8 7 4.4926 -2.9157 -0.1308 9 6 5.6616 -3.7997 -0.2336 10 6 5.5186 -4.6619 -1.4918 11 6 4.1766 -5.3964 -1.4522 12 6 4.0452 -6.2852 -2.6907 13 1 4.0938 -5.6683 -3.5880 14 6 2.7055 -7.0238 -2.6504 15 6 2.5592 -7.8875 -3.9053 16 6 3.6837 -8.9273 -3.9386 17 7 4.9753 -8.2348 -3.8296 18 6 5.9618 -8.4475 -4.7552 19 1 6.6540 -7.6549 -4.9984 20 6 6.0721 -9.6816 -5.3809 21 7 5.3601 -10.7024 -4.9529 22 14 7.2311 -9.8935 -6.8305 23 1 8.5709 -10.3022 -6.3375 24 1 6.6988 -10.9388 -7.7412 25 1 7.3450 -8.6081 -7.5653 26 6 5.1866 -7.3068 -2.7102 27 6 3.0356 -4.3766 -1.4332 28 6 3.1503 -3.5115 -0.1742 29 7 2.1923 -1.0605 0.0005 30 1 -0.3633 0.0004 1.0276 31 1 -0.3633 0.8897 -0.5143 32 1 -0.3633 -0.8903 -0.5135 33 1 4.3130 1.3695 0.0128 34 1 5.7125 -4.4421 0.6456 35 1 6.5688 -3.1995 -0.3031 36 1 6.3302 -5.3886 -1.5290 37 1 5.5589 -4.0252 -2.3756 38 1 4.1268 -6.0137 -0.5553 39 1 2.6676 -7.6594 -1.7656 40 1 1.8922 -6.2990 -2.6119 41 1 1.5948 -8.3950 -3.8873 42 1 2.6218 -7.2555 -4.7912 43 1 3.5691 -9.6163 -3.1018 44 1 3.6415 -9.4812 -4.8764 45 1 5.4375 -11.5650 -5.3900 46 1 6.1376 -6.7899 -2.8385 47 1 5.1961 -7.8620 -1.7721 48 1 3.0996 -3.7426 -2.3176 49 1 2.0797 -4.9003 -1.4288 50 1 2.9964 -4.1302 0.7098 51 1 2.4005 -2.7210 -0.2045 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000961418521.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:11:42 Heat of formation + Delta-G solvation = 100.744769 kcal Electronic energy + Delta-G solvation = -31394.787250 eV Core-core repulsion = 27332.601842 eV Total energy + Delta-G solvation = -4062.185408 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -44.04195 -40.22834 -38.48581 -36.69604 -34.34961 -34.03734 -33.17613 -32.16939 -31.19865 -30.27087 -29.27267 -28.32910 -25.49158 -25.32550 -24.04572 -23.24406 -22.48423 -21.62262 -21.52161 -20.41393 -19.33345 -18.97790 -17.72163 -17.38562 -17.25216 -16.59254 -16.05331 -15.36932 -15.16447 -14.87020 -14.36760 -14.25451 -14.04063 -13.87181 -13.66568 -13.51244 -13.38821 -13.20621 -13.16310 -12.92697 -12.49433 -12.36586 -12.25265 -11.97238 -11.87947 -11.41519 -11.18879 -10.99495 -10.90124 -10.84209 -10.71360 -10.52064 -10.41598 -10.24445 -10.12007 -10.06166 -9.98047 -9.80811 -9.79530 -9.38158 -9.21707 -8.71251 -8.43755 -6.55379 -5.74020 -3.21649 0.94616 1.61292 1.73214 2.78074 3.02859 3.38783 3.45285 3.47279 3.53031 4.26760 4.48807 4.50853 4.58741 4.65712 4.77176 4.87640 4.89108 4.96570 5.12906 5.27199 5.30905 5.37076 5.41248 5.52626 5.56929 5.65509 5.67377 5.73877 5.81017 5.83746 5.89895 6.00028 6.08544 6.14800 6.24925 6.30624 6.34138 6.45632 6.50718 6.52531 6.60902 6.70856 6.76751 6.91821 6.97422 7.10262 7.19870 7.47947 7.71044 7.76302 7.82818 7.94694 8.52525 9.27373 9.89547 10.47687 11.33641 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.018857 B = 0.002315 C = 0.002178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1484.465248 B =12094.271583 C =12850.960921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.101 3.899 2 N -0.146 5.146 3 N -0.288 5.288 4 C 0.035 3.965 5 C -0.037 4.037 6 C 0.605 3.395 7 O -0.533 6.533 8 N -0.591 5.591 9 C 0.112 3.888 10 C -0.130 4.130 11 C -0.080 4.080 12 C -0.097 4.097 13 H 0.064 0.936 14 C -0.103 4.103 15 C -0.144 4.144 16 C 0.170 3.830 17 N -0.593 5.593 18 C -0.249 4.249 19 H 0.063 0.937 20 C 0.002 3.998 21 N -0.906 5.906 22 Si 0.903 3.097 23 H -0.287 1.287 24 H -0.290 1.290 25 H -0.280 1.280 26 C 0.153 3.847 27 C -0.126 4.126 28 C 0.075 3.925 29 N -0.249 5.249 30 H 0.094 0.906 31 H 0.106 0.894 32 H 0.107 0.893 33 H 0.209 0.791 34 H 0.070 0.930 35 H 0.092 0.908 36 H 0.085 0.915 37 H 0.066 0.934 38 H 0.069 0.931 39 H 0.051 0.949 40 H 0.044 0.956 41 H 0.045 0.955 42 H 0.051 0.949 43 H 0.015 0.985 44 H 0.087 0.913 45 H 0.253 0.747 46 H 0.052 0.948 47 H 0.015 0.985 48 H 0.062 0.938 49 H 0.077 0.923 50 H 0.066 0.934 51 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.644 19.861 12.118 26.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 N -0.048 5.048 3 N -0.128 5.128 4 C -0.148 4.148 5 C -0.199 4.199 6 C 0.390 3.610 7 O -0.408 6.408 8 N -0.323 5.323 9 C -0.009 4.009 10 C -0.168 4.168 11 C -0.099 4.099 12 C -0.117 4.117 13 H 0.082 0.918 14 C -0.140 4.140 15 C -0.183 4.183 16 C 0.045 3.955 17 N -0.315 5.315 18 C -0.379 4.379 19 H 0.080 0.920 20 C -0.196 4.196 21 N -0.551 5.551 22 Si 0.733 3.267 23 H -0.214 1.214 24 H -0.216 1.216 25 H -0.205 1.205 26 C 0.027 3.973 27 C -0.164 4.164 28 C -0.049 4.049 29 N -0.097 5.097 30 H 0.113 0.887 31 H 0.125 0.875 32 H 0.126 0.874 33 H 0.225 0.775 34 H 0.088 0.912 35 H 0.110 0.890 36 H 0.103 0.897 37 H 0.084 0.916 38 H 0.087 0.913 39 H 0.070 0.930 40 H 0.063 0.937 41 H 0.064 0.936 42 H 0.069 0.931 43 H 0.033 0.967 44 H 0.105 0.895 45 H 0.063 0.937 46 H 0.071 0.929 47 H 0.032 0.968 48 H 0.081 0.919 49 H 0.096 0.904 50 H 0.084 0.916 51 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -12.403 19.936 12.100 26.414 hybrid contribution 1.294 -0.343 -0.785 1.551 sum -11.109 19.593 11.315 25.206 Atomic orbital electron populations 1.22295 0.69693 1.06425 1.05432 1.48287 1.09327 0.99469 1.47735 1.74024 1.03867 1.15493 1.19455 1.24828 0.94300 0.93580 1.02133 1.23146 0.91180 0.94858 1.10711 1.16754 0.85916 0.81299 0.77036 1.90804 1.24183 1.74987 1.50824 1.47961 1.08697 1.05210 1.70431 1.21765 0.88231 0.92320 0.98629 1.22028 0.98803 0.98803 0.97182 1.21169 0.93690 0.95637 0.99427 1.21671 0.97257 0.96617 0.96167 0.91785 1.21474 0.96102 0.97884 0.98555 1.22200 0.99614 0.99516 0.96958 1.20793 0.82167 0.90990 1.01586 1.44003 1.11863 1.49516 1.26133 1.19164 1.08733 0.94899 1.15086 0.91972 1.25149 0.98967 0.95158 1.00338 1.69977 1.43181 1.00485 1.41449 0.86286 0.80661 0.77425 0.82330 1.21367 1.21627 1.20516 1.20951 0.94905 0.90584 0.90862 1.21991 0.99692 0.97406 0.97330 1.22724 0.84113 0.99584 0.98446 1.74115 1.03152 1.14454 1.17997 0.88730 0.87521 0.87424 0.77464 0.91151 0.88954 0.89684 0.91562 0.91268 0.92997 0.93716 0.93632 0.93053 0.96721 0.89471 0.93698 0.92943 0.96757 0.91938 0.90428 0.91582 0.85357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.32 11.55 59.85 0.69 1.01 16 2 N -0.15 -1.23 4.35 -16.64 -0.07 -1.30 16 3 N -0.29 -2.80 12.01 30.90 0.37 -2.43 16 4 C 0.03 0.35 12.05 -16.84 -0.20 0.15 16 5 C -0.04 -0.42 6.95 -82.68 -0.57 -1.00 16 6 C 0.61 7.97 7.70 -12.35 -0.10 7.87 16 7 O -0.53 -8.27 16.39 5.32 0.09 -8.18 16 8 N -0.59 -7.14 2.97 -173.90 -0.52 -7.65 16 9 C 0.11 1.33 6.42 -3.71 -0.02 1.31 16 10 C -0.13 -1.66 5.05 -26.61 -0.13 -1.80 16 11 C -0.08 -1.05 1.74 -90.58 -0.16 -1.20 16 12 C -0.10 -1.60 1.92 -90.50 -0.17 -1.78 16 13 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 14 C -0.10 -1.68 4.86 -26.69 -0.13 -1.81 16 15 C -0.14 -2.76 6.08 -26.61 -0.16 -2.92 16 16 C 0.17 4.10 5.25 -3.69 -0.02 4.08 16 17 N -0.59 -14.89 3.00 -172.29 -0.52 -15.40 16 18 C -0.25 -6.87 9.59 -15.06 -0.14 -7.01 16 19 H 0.06 1.69 7.85 -52.48 -0.41 1.28 16 20 C 0.00 0.06 5.07 -17.43 -0.09 -0.03 16 21 N -0.91 -26.44 10.98 55.49 0.61 -25.83 16 22 Si 0.90 21.87 29.56 -169.99 -5.03 16.84 16 23 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 24 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 25 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 26 C 0.15 3.14 5.27 -3.71 -0.02 3.13 16 27 C -0.13 -1.43 5.05 -26.61 -0.13 -1.57 16 28 C 0.07 0.79 6.33 -3.71 -0.02 0.76 16 29 N -0.25 -2.51 8.51 33.42 0.28 -2.22 16 30 H 0.09 0.15 8.14 -51.93 -0.42 -0.27 16 31 H 0.11 0.18 8.14 -51.93 -0.42 -0.24 16 32 H 0.11 0.20 8.14 -51.93 -0.42 -0.23 16 33 H 0.21 1.62 8.06 -52.48 -0.42 1.20 16 34 H 0.07 0.76 8.14 -51.92 -0.42 0.34 16 35 H 0.09 1.16 7.03 -51.93 -0.37 0.79 16 36 H 0.08 1.12 6.49 -51.93 -0.34 0.78 16 37 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.04 0.63 6.34 -51.93 -0.33 0.30 16 41 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 42 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 43 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 44 H 0.09 2.36 6.06 -51.93 -0.31 2.05 16 45 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 46 H 0.05 1.06 6.51 -51.93 -0.34 0.72 16 47 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 48 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 49 H 0.08 0.83 6.34 -51.93 -0.33 0.50 16 50 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 51 H 0.13 1.30 3.75 -107.67 -0.40 0.90 16 LS Contribution 390.69 15.07 5.89 5.89 Total: -1.00 -33.52 390.69 -8.59 -42.11 By element: Atomic # 1 Polarization: 7.28 SS G_CDS: -8.31 Total: -1.03 kcal Atomic # 6 Polarization: 0.60 SS G_CDS: -1.39 Total: -0.79 kcal Atomic # 7 Polarization: -55.00 SS G_CDS: 0.16 Total: -54.84 kcal Atomic # 8 Polarization: -8.27 SS G_CDS: 0.09 Total: -8.18 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.03 Total: 16.84 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -33.52 -8.59 -42.11 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000961418521.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.852 kcal (2) G-P(sol) polarization free energy of solvation -33.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.108 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds