Wall clock time and date at job start Wed Apr 1 2020 06:11:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 N 1.28522 * 124.44570 * 2 1 4 4 C 1.31126 * 109.05975 * 179.69213 * 3 2 1 5 5 C 1.40923 * 105.77945 * 0.42819 * 4 3 2 6 6 C 1.47802 * 127.23943 * 179.83742 * 5 4 3 7 7 O 1.21558 * 120.00182 * 6.19639 * 6 5 4 8 8 N 1.34781 * 119.99683 * 186.20168 * 6 5 4 9 9 C 1.46927 * 120.62396 * 175.37175 * 8 6 5 10 10 C 1.53194 * 108.77328 * 233.58005 * 9 8 6 11 11 C 1.53034 * 109.31677 * 305.36870 * 10 9 8 12 12 C 1.53003 * 109.46206 * 181.38316 * 11 10 9 13 13 H 1.08998 * 109.49484 * 299.90960 * 12 11 10 14 14 C 1.53037 * 109.52422 * 179.82719 * 12 11 10 15 15 C 1.53040 * 109.53769 * 178.66993 * 14 12 11 16 16 C 1.53191 * 109.31385 * 61.36422 * 15 14 12 17 17 N 1.46957 * 108.88813 * 305.44512 * 16 15 14 18 18 C 1.36933 * 120.65309 * 233.52692 * 17 16 15 19 19 H 1.08005 * 119.99727 * 148.82646 * 18 17 16 20 20 C 1.38809 * 120.00312 * 328.83294 * 18 17 16 21 21 N 1.31620 * 119.99757 * 350.23060 * 20 18 17 22 22 Si 1.86800 * 120.00237 * 170.23044 * 20 18 17 23 23 H 1.48503 * 109.47176 * 90.00046 * 22 20 18 24 24 H 1.48501 * 109.47307 * 209.99895 * 22 20 18 25 25 H 1.48505 * 109.47193 * 330.00327 * 22 20 18 26 26 C 1.46932 * 118.71739 * 53.35406 * 17 16 15 27 27 C 1.53044 * 109.52694 * 61.37043 * 11 10 9 28 28 C 1.46918 * 120.63502 * 355.34724 * 8 6 5 29 29 N 1.28595 * 124.44415 * 179.97438 * 2 1 3 30 30 H 1.08996 * 109.47281 * 270.02435 * 1 2 3 31 31 H 1.08996 * 109.47111 * 30.03018 * 1 2 3 32 32 H 1.09005 * 109.46915 * 150.02498 * 1 2 3 33 33 H 1.08004 * 127.11339 * 180.29172 * 4 3 2 34 34 H 1.09009 * 109.58488 * 113.80228 * 9 8 6 35 35 H 1.08999 * 109.59256 * 353.37512 * 9 8 6 36 36 H 1.09005 * 109.49288 * 185.41359 * 10 9 8 37 37 H 1.08995 * 109.49330 * 65.32463 * 10 9 8 38 38 H 1.08999 * 109.46183 * 301.35931 * 11 10 9 39 39 H 1.09005 * 109.46297 * 298.69094 * 14 12 11 40 40 H 1.09002 * 109.46329 * 58.66293 * 14 12 11 41 41 H 1.09000 * 109.49664 * 181.32121 * 15 14 12 42 42 H 1.09001 * 109.49603 * 301.41462 * 15 14 12 43 43 H 1.09001 * 109.58251 * 65.15752 * 16 15 14 44 44 H 1.08996 * 109.58414 * 185.43521 * 16 15 14 45 45 H 0.97005 * 119.99568 * 180.02562 * 21 20 18 46 46 H 1.08999 * 109.58963 * 186.77995 * 26 17 16 47 47 H 1.09007 * 109.58097 * 66.49903 * 26 17 16 48 48 H 1.09004 * 109.49805 * 58.57868 * 27 11 10 49 49 H 1.08993 * 109.49789 * 178.67737 * 27 11 10 50 50 H 1.08997 * 109.59137 * 246.20563 * 28 8 6 51 51 H 1.09000 * 109.58603 * 6.62817 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.1920 1.0599 0.0000 4 6 3.4562 0.7120 0.0067 5 6 3.4659 -0.6972 0.0009 6 6 4.6487 -1.5835 0.0014 7 8 5.7623 -1.1109 0.1210 8 7 4.4926 -2.9157 -0.1308 9 6 5.6616 -3.7997 -0.2336 10 6 5.5186 -4.6619 -1.4918 11 6 4.1766 -5.3964 -1.4522 12 6 4.0452 -6.2852 -2.6907 13 1 4.0938 -5.6683 -3.5880 14 6 2.7055 -7.0238 -2.6504 15 6 2.5592 -7.8875 -3.9053 16 6 3.6837 -8.9273 -3.9386 17 7 4.9753 -8.2348 -3.8296 18 6 5.9618 -8.4475 -4.7552 19 1 6.6540 -7.6549 -4.9984 20 6 6.0721 -9.6816 -5.3809 21 7 5.3601 -10.7024 -4.9529 22 14 7.2311 -9.8935 -6.8305 23 1 8.5709 -10.3022 -6.3375 24 1 6.6988 -10.9388 -7.7412 25 1 7.3450 -8.6081 -7.5653 26 6 5.1866 -7.3068 -2.7102 27 6 3.0356 -4.3766 -1.4332 28 6 3.1503 -3.5115 -0.1742 29 7 2.1923 -1.0605 0.0005 30 1 -0.3633 0.0004 1.0276 31 1 -0.3633 0.8897 -0.5143 32 1 -0.3633 -0.8903 -0.5135 33 1 4.3130 1.3695 0.0128 34 1 5.7125 -4.4421 0.6456 35 1 6.5688 -3.1995 -0.3031 36 1 6.3302 -5.3886 -1.5290 37 1 5.5589 -4.0252 -2.3756 38 1 4.1268 -6.0137 -0.5553 39 1 2.6676 -7.6594 -1.7656 40 1 1.8922 -6.2990 -2.6119 41 1 1.5948 -8.3950 -3.8873 42 1 2.6218 -7.2555 -4.7912 43 1 3.5691 -9.6163 -3.1018 44 1 3.6415 -9.4812 -4.8764 45 1 5.4375 -11.5650 -5.3900 46 1 6.1376 -6.7899 -2.8385 47 1 5.1961 -7.8620 -1.7721 48 1 3.0996 -3.7426 -2.3176 49 1 2.0797 -4.9003 -1.4288 50 1 2.9964 -4.1302 0.7098 51 1 2.4005 -2.7210 -0.2045 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000961418521.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:11:41 Heat of formation + Delta-G solvation = 80.004151 kcal Electronic energy + Delta-G solvation = -31395.686631 eV Core-core repulsion = 27332.601842 eV Total energy + Delta-G solvation = -4063.084789 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -44.74482 -41.23326 -39.79756 -38.03740 -35.62477 -34.84390 -34.17897 -33.52328 -32.49216 -31.77057 -30.65023 -28.93037 -27.22936 -26.52122 -25.08579 -24.42140 -23.32789 -22.99695 -22.75712 -21.58362 -20.56458 -20.28581 -18.67845 -18.39570 -18.05596 -18.03209 -17.00746 -16.86078 -16.34076 -15.84277 -15.77263 -15.54281 -15.22752 -15.08641 -14.84258 -14.67906 -14.58695 -14.19273 -14.09582 -13.86434 -13.64442 -13.59941 -13.46121 -13.14956 -12.95994 -12.95508 -12.76964 -12.46165 -12.32347 -12.18775 -12.00238 -11.91082 -11.75420 -11.59307 -11.53831 -11.43759 -11.34517 -11.15248 -10.82372 -10.66155 -10.52793 -10.48825 -9.67361 -8.58263 -7.85034 -5.35951 0.15479 0.86638 1.21463 1.45185 1.45512 1.55267 1.91457 2.11333 2.50132 2.80778 3.29456 3.53556 3.65004 3.82673 3.85493 3.93460 3.99729 4.18157 4.24281 4.30963 4.34514 4.35441 4.38105 4.47585 4.48059 4.56110 4.59113 4.64782 4.69272 4.78636 4.81893 4.90895 4.92758 4.98546 5.03998 5.05614 5.11263 5.15056 5.18211 5.24348 5.36680 5.42233 5.43513 5.54315 5.59135 5.62913 5.72202 5.78938 5.85158 6.27051 6.43168 6.89198 7.08923 7.17991 7.89715 8.41387 9.19788 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.018857 B = 0.002315 C = 0.002178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1484.465248 B =12094.271583 C =12850.960921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.134 5.134 3 N -0.296 5.296 4 C 0.028 3.972 5 C -0.062 4.062 6 C 0.602 3.398 7 O -0.566 6.566 8 N -0.592 5.592 9 C 0.116 3.884 10 C -0.125 4.125 11 C -0.071 4.071 12 C -0.083 4.083 13 H 0.049 0.951 14 C -0.097 4.097 15 C -0.134 4.134 16 C 0.175 3.825 17 N -0.613 5.613 18 C -0.260 4.260 19 H 0.061 0.939 20 C -0.051 4.051 21 N -0.936 5.936 22 Si 0.967 3.033 23 H -0.284 1.284 24 H -0.291 1.291 25 H -0.272 1.272 26 C 0.151 3.849 27 C -0.118 4.118 28 C 0.078 3.922 29 N -0.247 5.247 30 H 0.115 0.885 31 H 0.123 0.877 32 H 0.125 0.875 33 H 0.221 0.779 34 H 0.085 0.915 35 H 0.082 0.918 36 H 0.077 0.923 37 H 0.053 0.947 38 H 0.078 0.922 39 H 0.055 0.945 40 H 0.081 0.919 41 H 0.067 0.933 42 H 0.043 0.957 43 H -0.007 1.007 44 H 0.050 0.950 45 H 0.249 0.751 46 H 0.048 0.952 47 H 0.010 0.990 48 H 0.052 0.948 49 H 0.095 0.905 50 H 0.081 0.919 51 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.687 21.449 12.984 28.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.038 5.038 3 N -0.136 5.136 4 C -0.154 4.154 5 C -0.222 4.222 6 C 0.388 3.612 7 O -0.444 6.444 8 N -0.323 5.323 9 C -0.006 4.006 10 C -0.163 4.163 11 C -0.090 4.090 12 C -0.103 4.103 13 H 0.068 0.932 14 C -0.134 4.134 15 C -0.173 4.173 16 C 0.049 3.951 17 N -0.336 5.336 18 C -0.391 4.391 19 H 0.079 0.921 20 C -0.246 4.246 21 N -0.583 5.583 22 Si 0.795 3.205 23 H -0.211 1.211 24 H -0.218 1.218 25 H -0.197 1.197 26 C 0.026 3.974 27 C -0.156 4.156 28 C -0.045 4.045 29 N -0.096 5.096 30 H 0.133 0.867 31 H 0.141 0.859 32 H 0.143 0.857 33 H 0.237 0.763 34 H 0.104 0.896 35 H 0.100 0.900 36 H 0.095 0.905 37 H 0.071 0.929 38 H 0.096 0.904 39 H 0.074 0.926 40 H 0.099 0.901 41 H 0.085 0.915 42 H 0.062 0.938 43 H 0.011 0.989 44 H 0.068 0.932 45 H 0.058 0.942 46 H 0.066 0.934 47 H 0.028 0.972 48 H 0.071 0.929 49 H 0.113 0.887 50 H 0.099 0.901 51 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -14.465 21.544 12.981 29.015 hybrid contribution 1.849 -0.820 -1.028 2.269 sum -12.616 20.724 11.952 27.046 Atomic orbital electron populations 1.22841 0.66868 1.08185 1.07346 1.48854 1.10761 0.98747 1.45482 1.74039 1.03784 1.15949 1.19876 1.25097 0.95018 0.93430 1.01842 1.22920 0.91222 0.95096 1.12967 1.16991 0.86060 0.81667 0.76435 1.90776 1.25565 1.75603 1.52469 1.48059 1.09314 1.05032 1.69901 1.21696 0.88114 0.92159 0.98591 1.21942 0.98628 0.98508 0.97231 1.21078 0.94573 0.95600 0.97756 1.21470 0.95822 0.95668 0.97382 0.93215 1.21455 0.96903 0.98121 0.96920 1.22042 0.98384 0.98495 0.98362 1.20615 0.83839 0.91948 0.98671 1.44290 1.11911 1.50300 1.27134 1.19467 1.09031 0.94898 1.15670 0.92142 1.25891 1.00785 0.94967 1.03006 1.70145 1.44735 1.00683 1.42697 0.85285 0.78613 0.77373 0.79241 1.21064 1.21761 1.19665 1.21098 0.96690 0.90536 0.89065 1.21922 0.99411 0.96808 0.97425 1.22819 0.83406 0.99771 0.98505 1.73999 1.02684 1.15065 1.17873 0.86692 0.85858 0.85685 0.76287 0.89637 0.89967 0.90481 0.92850 0.90362 0.92598 0.90051 0.91485 0.93770 0.98922 0.93172 0.94164 0.93372 0.97169 0.92872 0.88696 0.90112 0.84584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.26 11.55 127.77 1.48 1.73 16 2 N -0.13 -1.92 4.35 -206.55 -0.90 -2.81 16 3 N -0.30 -5.19 12.01 -56.17 -0.67 -5.86 16 4 C 0.03 0.54 12.05 85.46 1.03 1.57 16 5 C -0.06 -1.34 6.95 42.24 0.29 -1.05 16 6 C 0.60 15.48 7.70 86.77 0.67 16.15 16 7 O -0.57 -17.70 16.39 -3.90 -0.06 -17.77 16 8 N -0.59 -13.43 2.97 -822.36 -2.44 -15.88 16 9 C 0.12 2.65 6.42 86.36 0.55 3.20 16 10 C -0.12 -3.10 5.05 30.67 0.15 -2.95 16 11 C -0.07 -1.70 1.74 -10.77 -0.02 -1.72 16 12 C -0.08 -2.64 1.92 -10.72 -0.02 -2.66 16 13 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 14 C -0.10 -2.90 4.86 30.62 0.15 -2.75 16 15 C -0.13 -4.98 6.08 30.67 0.19 -4.79 16 16 C 0.17 8.60 5.25 86.36 0.45 9.06 16 17 N -0.61 -31.38 3.00 -699.01 -2.09 -33.48 16 18 C -0.26 -14.66 9.59 84.03 0.81 -13.86 16 19 H 0.06 3.35 7.85 -2.91 -0.02 3.33 16 20 C -0.05 -2.93 5.07 84.86 0.43 -2.50 16 21 N -0.94 -56.29 10.98 21.65 0.24 -56.05 16 22 Si 0.97 45.78 29.56 68.60 2.03 47.81 16 23 H -0.28 -13.22 7.11 99.48 0.71 -12.52 16 24 H -0.29 -13.74 7.11 99.48 0.71 -13.04 16 25 H -0.27 -12.37 7.11 99.48 0.71 -11.67 16 26 C 0.15 6.22 5.27 86.36 0.45 6.67 16 27 C -0.12 -2.30 5.05 30.67 0.15 -2.15 16 28 C 0.08 1.41 6.33 86.36 0.55 1.95 16 29 N -0.25 -4.39 8.51 -48.17 -0.41 -4.80 16 30 H 0.11 -0.05 8.14 -2.39 -0.02 -0.07 16 31 H 0.12 0.00 8.14 -2.39 -0.02 -0.02 16 32 H 0.12 -0.02 8.14 -2.38 -0.02 -0.04 16 33 H 0.22 3.33 8.06 -2.91 -0.02 3.30 16 34 H 0.09 1.70 8.14 -2.38 -0.02 1.68 16 35 H 0.08 2.06 7.03 -2.39 -0.02 2.05 16 36 H 0.08 2.02 6.49 -2.38 -0.02 2.01 16 37 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 38 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 39 H 0.06 1.67 8.14 -2.38 -0.02 1.65 16 40 H 0.08 1.91 6.34 -2.39 -0.02 1.90 16 41 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 42 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 43 H -0.01 -0.38 8.14 -2.39 -0.02 -0.40 16 44 H 0.05 2.82 6.06 -2.39 -0.01 2.80 16 45 H 0.25 14.49 8.31 -92.70 -0.77 13.72 16 46 H 0.05 1.98 6.51 -2.39 -0.02 1.96 16 47 H 0.01 0.43 8.14 -2.38 -0.02 0.41 16 48 H 0.05 1.17 8.14 -2.38 -0.02 1.15 16 49 H 0.09 1.57 6.34 -2.39 -0.02 1.56 16 50 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 51 H 0.14 2.35 3.75 -74.50 -0.28 2.07 16 Total: -1.00 -74.69 390.69 3.66 -71.03 By element: Atomic # 1 Polarization: 11.23 SS G_CDS: 0.66 Total: 11.89 kcal Atomic # 6 Polarization: -1.41 SS G_CDS: 7.32 Total: 5.91 kcal Atomic # 7 Polarization: -112.60 SS G_CDS: -6.28 Total: -118.88 kcal Atomic # 8 Polarization: -17.70 SS G_CDS: -0.06 Total: -17.77 kcal Atomic # 14 Polarization: 45.78 SS G_CDS: 2.03 Total: 47.81 kcal Total: -74.69 3.66 -71.03 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000961418521.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.037 kcal (2) G-P(sol) polarization free energy of solvation -74.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.033 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds