Wall clock time and date at job start Wed Apr 1 2020 06:13:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34781 * 120.00044 * 2 1 4 4 O 1.21280 * 119.99623 * 4.01264 * 3 2 1 5 5 C 1.50695 * 119.99841 * 184.01233 * 3 2 1 6 6 H 1.08999 * 109.45866 * 41.74774 * 5 3 2 7 7 C 1.53144 * 109.45571 * 161.70701 * 5 3 2 8 8 C 1.53455 * 109.30489 * 189.46695 * 7 5 3 9 9 C 1.50802 * 108.13548 * 311.28301 * 8 7 5 10 10 N 1.29841 * 128.52641 * 195.86629 * 9 8 7 11 11 N 1.28901 * 109.47842 * 179.91042 * 10 9 8 12 12 C 1.30837 * 109.74374 * 0.02594 * 11 10 9 13 13 N 1.34697 * 107.06851 * 0.04494 * 12 11 10 14 14 C 1.46254 * 128.84535 * 179.82282 * 13 12 11 15 15 C 1.46500 * 120.00086 * 180.02562 * 2 1 3 16 16 C 1.52995 * 109.47006 * 66.08245 * 15 2 1 17 17 C 1.53012 * 109.47039 * 180.02562 * 16 15 2 18 18 C 1.53000 * 109.46595 * 60.00375 * 17 16 15 19 19 N 1.46500 * 109.47405 * 59.99929 * 18 17 16 20 20 C 1.36934 * 119.99620 * 84.99725 * 19 18 17 21 21 H 1.08003 * 120.00718 * 0.02562 * 20 19 18 22 22 C 1.38821 * 119.99890 * 180.02562 * 20 19 18 23 23 N 1.31611 * 119.99471 * 0.02562 * 22 20 19 24 24 Si 1.86798 * 119.99837 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47193 * 90.00321 * 24 22 20 26 26 H 1.48499 * 109.46902 * 209.99806 * 24 22 20 27 27 H 1.48492 * 109.47270 * 329.99766 * 24 22 20 28 28 C 1.53007 * 109.47307 * 299.99766 * 18 17 16 29 29 C 1.52997 * 109.46870 * 60.00253 * 28 18 17 30 30 H 1.08997 * 109.47325 * 272.48177 * 1 2 3 31 31 H 1.09006 * 109.47197 * 32.48560 * 1 2 3 32 32 H 1.09003 * 109.46987 * 152.47858 * 1 2 3 33 33 H 1.09007 * 109.49335 * 309.42015 * 7 5 3 34 34 H 1.09004 * 109.49743 * 69.51601 * 7 5 3 35 35 H 1.08997 * 109.73144 * 70.94863 * 8 7 5 36 36 H 1.09005 * 109.72778 * 191.57843 * 8 7 5 37 37 H 1.07996 * 126.46754 * 180.02562 * 12 11 10 38 38 H 1.08996 * 109.59392 * 77.35976 * 14 13 12 39 39 H 1.09001 * 109.59528 * 316.90499 * 14 13 12 40 40 H 1.08998 * 109.46964 * 186.08612 * 15 2 1 41 41 H 1.08998 * 109.47559 * 300.00002 * 16 15 2 42 42 H 1.09004 * 109.47252 * 60.00674 * 16 15 2 43 43 H 1.08998 * 109.46872 * 180.02562 * 17 16 15 44 44 H 1.08998 * 109.46908 * 300.00354 * 17 16 15 45 45 H 1.09005 * 109.46854 * 180.02562 * 18 17 16 46 46 H 0.96995 * 120.00282 * 264.99509 * 19 18 17 47 47 H 0.97009 * 119.99868 * 180.02562 * 23 22 20 48 48 H 1.09000 * 109.46582 * 300.00809 * 28 18 17 49 49 H 1.08996 * 109.46915 * 180.02562 * 28 18 17 50 50 H 1.08996 * 109.47157 * 180.02562 * 29 28 18 51 51 H 1.09004 * 109.47168 * 59.99912 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5347 2.2162 0.0735 5 6 3.6431 1.1688 -0.0913 6 1 3.9632 0.4268 -0.8228 7 6 4.1263 2.5553 -0.5264 8 6 5.6256 2.4925 -0.8472 9 6 6.3210 1.7941 0.2942 10 7 7.5882 1.7700 0.5759 11 7 7.7795 1.0621 1.6360 12 6 6.6349 0.6041 2.0741 13 7 5.6818 1.0543 1.2355 14 6 4.2382 0.8240 1.2790 15 6 2.1975 -1.2687 -0.0006 16 6 1.9460 -2.0022 -1.3195 17 6 2.7106 -3.3276 -1.3198 18 6 2.2291 -4.1942 -0.1545 19 7 0.7955 -4.4574 -0.3013 20 6 0.3668 -5.4984 -1.0809 21 1 1.0856 -6.1256 -1.5873 22 6 -0.9917 -5.7475 -1.2205 23 7 -1.8676 -4.9828 -0.6039 24 14 -1.5764 -7.1679 -2.2834 25 1 -1.6899 -8.3937 -1.4528 26 1 -2.9031 -6.8386 -2.8636 27 1 -0.6011 -7.4007 -3.3787 28 6 2.4806 -3.4607 1.1646 29 6 1.7161 -2.1354 1.1648 30 1 -0.3634 0.0445 1.0267 31 1 -0.3634 0.8669 -0.5520 32 1 -0.3633 -0.9114 -0.4749 33 1 3.5771 2.8700 -1.4139 34 1 3.9562 3.2693 0.2795 35 1 5.7814 1.9339 -1.7701 36 1 6.0210 3.5024 -0.9572 37 1 6.4829 -0.0179 2.9438 38 1 3.7896 1.4592 2.0427 39 1 4.0418 -0.2231 1.5098 40 1 3.2641 -1.0724 0.1085 41 1 0.8794 -2.1984 -1.4285 42 1 2.2886 -1.3846 -2.1498 43 1 2.5318 -3.8499 -2.2597 44 1 3.7773 -3.1317 -1.2106 45 1 2.7741 -5.1383 -0.1544 46 1 0.1499 -3.8944 0.1537 47 1 -2.8169 -5.1570 -0.7011 48 1 3.5473 -3.2649 1.2737 49 1 2.1380 -4.0784 1.9947 50 1 1.8955 -1.6127 2.1042 51 1 0.6494 -2.3312 1.0555 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000964438110.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:13:13 Heat of formation + Delta-G solvation = 33.400123 kcal Electronic energy + Delta-G solvation = -32346.242888 eV Core-core repulsion = 28281.137197 eV Total energy + Delta-G solvation = -4065.105691 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -44.29739 -41.66537 -39.70282 -37.87151 -36.72310 -34.78251 -34.60978 -32.40363 -32.16681 -31.63505 -30.31559 -29.37878 -28.12169 -25.87899 -25.60307 -24.20382 -23.49941 -23.27317 -23.17966 -21.07168 -20.13056 -19.72231 -19.18283 -18.51845 -18.17002 -17.29367 -17.10785 -16.67359 -16.47368 -16.13077 -15.84280 -15.47248 -15.34173 -15.28526 -15.21164 -15.02680 -14.92508 -14.35174 -13.92016 -13.71118 -13.44421 -13.38642 -13.31671 -13.01010 -12.98884 -12.95502 -12.84467 -12.60692 -12.60147 -12.27832 -12.17456 -12.06798 -11.98325 -11.82137 -11.60342 -11.35659 -11.24035 -11.14959 -11.10091 -10.90018 -10.75981 -10.18781 -9.69652 -8.90278 -7.90105 -5.14263 0.88522 1.26823 1.47451 1.48708 1.55542 1.58117 1.86850 1.91238 2.58959 3.09737 3.17264 3.34242 3.44228 3.46580 3.66072 3.81205 3.89847 3.93870 3.99186 4.05117 4.11087 4.15524 4.27150 4.36241 4.40078 4.43705 4.46283 4.54616 4.57731 4.59546 4.70293 4.72882 4.76559 4.86403 4.89548 4.95016 4.98280 5.03108 5.08154 5.14373 5.21826 5.28414 5.33762 5.39503 5.44623 5.53708 5.65048 5.70461 5.91539 6.33596 6.34480 7.01183 7.41407 7.72759 8.21903 8.43162 9.33051 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.016649 B = 0.002832 C = 0.002611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1681.389985 B = 9883.388833 C =10719.594305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.598 5.598 3 C 0.525 3.475 4 O -0.567 6.567 5 C -0.119 4.119 6 H 0.123 0.877 7 C -0.099 4.099 8 C -0.029 4.029 9 C 0.177 3.823 10 N -0.337 5.337 11 N -0.350 5.350 12 C 0.170 3.830 13 N -0.468 5.468 14 C 0.115 3.885 15 C 0.145 3.855 16 C -0.117 4.117 17 C -0.123 4.123 18 C 0.160 3.840 19 N -0.729 5.729 20 C -0.228 4.228 21 H 0.070 0.930 22 C -0.073 4.073 23 N -0.966 5.966 24 Si 0.958 3.042 25 H -0.292 1.292 26 H -0.301 1.301 27 H -0.273 1.273 28 C -0.111 4.111 29 C -0.121 4.121 30 H 0.061 0.939 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.095 0.905 34 H 0.073 0.927 35 H 0.113 0.887 36 H 0.114 0.886 37 H 0.259 0.741 38 H 0.105 0.895 39 H 0.129 0.871 40 H 0.117 0.883 41 H 0.044 0.956 42 H 0.062 0.938 43 H 0.037 0.963 44 H 0.081 0.919 45 H 0.040 0.960 46 H 0.375 0.625 47 H 0.247 0.753 48 H 0.097 0.903 49 H 0.057 0.943 50 H 0.084 0.916 51 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.052 13.229 3.921 18.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.328 5.328 3 C 0.313 3.687 4 O -0.446 6.446 5 C -0.140 4.140 6 H 0.141 0.859 7 C -0.138 4.138 8 C -0.069 4.069 9 C -0.092 4.092 10 N -0.176 5.176 11 N -0.188 5.188 12 C -0.118 4.118 13 N -0.159 5.159 14 C -0.008 4.008 15 C 0.043 3.957 16 C -0.155 4.155 17 C -0.163 4.163 18 C 0.052 3.948 19 N -0.370 5.370 20 C -0.360 4.360 21 H 0.088 0.912 22 C -0.265 4.265 23 N -0.617 5.617 24 Si 0.789 3.211 25 H -0.220 1.220 26 H -0.228 1.228 27 H -0.198 1.198 28 C -0.149 4.149 29 C -0.160 4.160 30 H 0.079 0.921 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.114 0.886 34 H 0.092 0.908 35 H 0.131 0.869 36 H 0.132 0.868 37 H 0.275 0.725 38 H 0.123 0.877 39 H 0.147 0.853 40 H 0.134 0.866 41 H 0.063 0.937 42 H 0.081 0.919 43 H 0.056 0.944 44 H 0.100 0.900 45 H 0.058 0.942 46 H 0.209 0.791 47 H 0.056 0.944 48 H 0.116 0.884 49 H 0.076 0.924 50 H 0.103 0.897 51 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 14.220 13.866 3.786 20.219 hybrid contribution -2.692 -1.287 -0.411 3.012 sum 11.528 12.578 3.375 17.392 Atomic orbital electron populations 1.21565 0.79412 1.02507 1.02134 1.48055 1.07099 1.06130 1.71563 1.20440 0.89654 0.82825 0.75800 1.90716 1.70795 1.32132 1.50995 1.21672 0.91180 1.02275 0.98896 0.85923 1.21498 0.94189 0.94218 1.03889 1.20380 0.92290 1.01712 0.92474 1.25293 0.89688 0.98127 0.96070 1.73987 1.14403 1.18398 1.10765 1.74402 1.23868 1.12998 1.07538 1.27039 0.83397 1.02065 0.99307 1.46205 1.09629 1.38189 1.21876 1.22135 0.75163 1.05742 0.97714 1.21418 0.96847 0.81973 0.95476 1.21690 1.01044 0.96170 0.96628 1.21986 0.99312 0.95506 0.99546 1.20552 0.84502 0.95894 0.93885 1.42637 1.02221 1.34905 1.57285 1.19566 0.90749 1.05644 1.20067 0.91172 1.25332 0.96446 1.01829 1.02937 1.69767 1.00542 1.42197 1.49231 0.85358 0.77124 0.79759 0.78864 1.21952 1.22792 1.19839 1.21686 1.01286 0.95214 0.96740 1.21784 1.00512 0.95740 0.97951 0.92074 0.91504 0.91525 0.88644 0.90824 0.86902 0.86774 0.72534 0.87732 0.85346 0.86588 0.93673 0.91920 0.94366 0.90004 0.94200 0.79121 0.94388 0.88413 0.92386 0.89707 0.93404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.12 9.24 127.77 1.18 3.30 16 2 N -0.60 -12.25 2.76 -822.59 -2.27 -14.52 16 3 C 0.53 10.28 6.83 87.65 0.60 10.88 16 4 O -0.57 -15.21 15.80 -3.03 -0.05 -15.26 16 5 C -0.12 -1.50 1.67 -11.38 -0.02 -1.52 16 6 H 0.12 1.30 7.04 -2.39 -0.02 1.28 16 7 C -0.10 -1.24 4.60 30.80 0.14 -1.10 16 8 C -0.03 -0.35 6.33 30.03 0.19 -0.16 16 9 C 0.18 3.25 7.75 138.14 1.07 4.32 16 10 N -0.34 -8.63 12.21 -50.28 -0.61 -9.25 16 11 N -0.35 -8.65 12.23 -60.31 -0.74 -9.38 16 12 C 0.17 2.63 12.83 180.27 2.31 4.94 16 13 N -0.47 -6.66 3.11 -519.39 -1.62 -8.27 16 14 C 0.11 1.14 6.00 86.53 0.52 1.66 16 15 C 0.15 2.72 1.92 44.99 0.09 2.81 16 16 C -0.12 -2.97 5.12 30.60 0.16 -2.81 16 17 C -0.12 -3.32 5.61 30.60 0.17 -3.15 16 18 C 0.16 5.06 3.10 44.99 0.14 5.20 16 19 N -0.73 -31.83 4.28 -322.91 -1.38 -33.21 16 20 C -0.23 -11.64 9.93 84.04 0.83 -10.80 16 21 H 0.07 3.50 7.83 -2.91 -0.02 3.48 16 22 C -0.07 -3.96 5.50 84.87 0.47 -3.50 16 23 N -0.97 -55.70 13.06 21.65 0.28 -55.42 16 24 Si 0.96 44.47 29.55 68.60 2.03 46.50 16 25 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 26 H -0.30 -14.28 7.11 99.48 0.71 -13.57 16 27 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 28 C -0.11 -2.52 5.61 30.60 0.17 -2.35 16 29 C -0.12 -2.59 4.93 30.59 0.15 -2.44 16 30 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 31 H 0.07 1.69 7.56 -2.38 -0.02 1.67 16 32 H 0.07 1.90 6.64 -2.39 -0.02 1.88 16 33 H 0.10 1.20 8.08 -2.38 -0.02 1.18 16 34 H 0.07 1.06 8.12 -2.38 -0.02 1.04 16 35 H 0.11 1.04 8.14 -2.39 -0.02 1.02 16 36 H 0.11 1.17 8.14 -2.38 -0.02 1.16 16 37 H 0.26 1.45 8.06 -2.91 -0.02 1.43 16 38 H 0.10 1.01 8.12 -2.39 -0.02 0.99 16 39 H 0.13 0.77 6.37 -2.39 -0.02 0.75 16 40 H 0.12 1.44 4.24 -2.39 -0.01 1.43 16 41 H 0.04 1.55 6.39 -2.39 -0.02 1.53 16 42 H 0.06 1.44 8.14 -2.38 -0.02 1.42 16 43 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 44 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 45 H 0.04 1.34 8.08 -2.38 -0.02 1.32 16 46 H 0.38 17.60 6.06 -92.71 -0.56 17.04 16 47 H 0.25 14.08 8.31 -92.70 -0.77 13.31 16 48 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 49 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 50 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 51 H 0.05 1.39 5.80 -2.39 -0.01 1.38 16 Total: -1.00 -73.64 391.26 4.20 -69.44 By element: Atomic # 1 Polarization: 23.71 SS G_CDS: 0.38 Total: 24.09 kcal Atomic # 6 Polarization: -2.88 SS G_CDS: 8.17 Total: 5.30 kcal Atomic # 7 Polarization: -123.72 SS G_CDS: -6.34 Total: -130.06 kcal Atomic # 8 Polarization: -15.21 SS G_CDS: -0.05 Total: -15.26 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 2.03 Total: 46.50 kcal Total: -73.64 4.20 -69.44 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000964438110.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.840 kcal (2) G-P(sol) polarization free energy of solvation -73.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.440 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds