Wall clock time and date at job start Wed Apr 1 2020 05:58:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 N 1.40445 * 126.81984 * 2 1 4 4 C 1.30711 * 106.79006 * 180.26054 * 3 2 1 5 5 C 1.50697 * 125.52631 * 179.79195 * 4 3 2 6 6 C 1.53001 * 117.50216 * 8.57992 * 5 4 3 7 7 C 1.53004 * 60.00176 * 252.51569 * 6 5 4 8 8 N 1.33241 * 108.94672 * 359.75684 * 4 3 2 9 9 C 1.30832 * 109.83090 * 359.97438 * 8 4 3 10 10 C 1.50696 * 125.96066 * 180.02562 * 9 8 4 11 11 C 1.50697 * 109.47121 * 90.02785 * 10 9 8 12 12 O 1.21273 * 120.00361 * 359.97438 * 11 10 9 13 13 N 1.34780 * 119.99941 * 180.02562 * 11 10 9 14 14 C 1.46492 * 120.00132 * 179.97438 * 13 11 10 15 15 H 1.09000 * 109.47152 * 34.99769 * 14 13 11 16 16 C 1.52999 * 109.47381 * 274.99545 * 14 13 11 17 17 C 1.52997 * 109.46991 * 300.00228 * 16 14 13 18 18 C 1.52996 * 109.47131 * 299.99311 * 17 16 14 19 19 C 1.53002 * 109.46972 * 60.00459 * 18 17 16 20 20 H 1.08996 * 109.47407 * 59.99513 * 19 18 17 21 21 N 1.46496 * 109.47037 * 180.02562 * 19 18 17 22 22 C 1.36941 * 119.99878 * 274.99338 * 21 19 18 23 23 H 1.08003 * 119.99725 * 0.02562 * 22 21 19 24 24 C 1.38815 * 119.99972 * 179.97438 * 22 21 19 25 25 N 1.31623 * 119.99409 * 180.02562 * 24 22 21 26 26 Si 1.86790 * 120.00035 * 0.02562 * 24 22 21 27 27 H 1.48498 * 109.47680 * 89.99323 * 26 24 22 28 28 H 1.48503 * 109.47101 * 209.99813 * 26 24 22 29 29 H 1.48499 * 109.47200 * 329.99022 * 26 24 22 30 30 C 1.52997 * 109.46817 * 299.99733 * 19 18 17 31 31 H 1.08997 * 109.46921 * 270.15869 * 1 2 3 32 32 H 1.08995 * 109.47245 * 30.16829 * 1 2 3 33 33 H 1.09007 * 109.46794 * 150.16969 * 1 2 3 34 34 H 1.08997 * 115.55451 * 154.29166 * 5 4 3 35 35 H 1.09002 * 117.49073 * 0.02562 * 6 5 4 36 36 H 1.08993 * 117.49861 * 145.01953 * 6 5 4 37 37 H 1.09005 * 117.49150 * 252.50875 * 7 6 5 38 38 H 1.08989 * 117.52202 * 107.48084 * 7 6 5 39 39 H 1.09000 * 109.47074 * 330.02241 * 10 9 8 40 40 H 1.09007 * 109.46939 * 210.02727 * 10 9 8 41 41 H 0.97006 * 119.99905 * 359.97438 * 13 11 10 42 42 H 1.09002 * 109.46719 * 59.99939 * 16 14 13 43 43 H 1.08993 * 109.47839 * 179.97438 * 16 14 13 44 44 H 1.09001 * 109.47289 * 179.97438 * 17 16 14 45 45 H 1.09000 * 109.47611 * 59.99933 * 17 16 14 46 46 H 1.08996 * 109.47452 * 300.00000 * 18 17 16 47 47 H 1.09000 * 109.47054 * 180.02562 * 18 17 16 48 48 H 0.97001 * 120.00575 * 95.00206 * 21 19 18 49 49 H 0.97000 * 119.99297 * 180.02562 * 25 24 22 50 50 H 1.09001 * 109.47502 * 300.00518 * 30 19 18 51 51 H 1.09001 * 109.47289 * 180.02562 * 30 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 7 2.3067 1.1243 0.0000 4 6 3.5348 0.6766 -0.0057 5 6 4.7775 1.5290 -0.0123 6 6 4.6022 3.0354 0.1899 7 6 4.9710 2.4866 -1.1899 8 7 3.5096 -0.6556 -0.0039 9 6 2.2707 -1.0761 0.0035 10 6 1.8248 -2.5155 0.0083 11 6 1.6832 -2.9928 1.4307 12 8 1.9214 -2.2385 2.3500 13 7 1.2928 -4.2582 1.6812 14 6 1.1556 -4.7224 3.0639 15 1 0.7946 -3.9046 3.6875 16 6 2.5159 -5.1955 3.5804 17 6 3.0226 -6.3434 2.7049 18 6 2.0259 -7.5030 2.7572 19 6 0.6656 -7.0299 2.2407 20 1 0.7676 -6.6846 1.2120 21 7 -0.2890 -8.1401 2.2913 22 6 -0.3543 -9.0346 1.2565 23 1 0.2981 -8.9218 0.4032 24 6 -1.2585 -10.0868 1.3047 25 7 -1.3209 -10.9468 0.3102 26 14 -2.3863 -10.2822 2.7807 27 1 -3.6477 -9.5357 2.5423 28 1 -2.6932 -11.7212 2.9822 29 1 -1.7147 -9.7452 3.9914 30 6 0.1589 -5.8820 3.1161 31 1 -0.3633 0.0028 1.0276 32 1 -0.3633 0.8884 -0.5164 33 1 -0.3633 -0.8916 -0.5112 34 1 5.6685 1.0645 0.4102 35 1 3.5879 3.4098 0.3283 36 1 5.3777 3.5621 0.7459 37 1 5.9893 2.6525 -1.5416 38 1 4.1997 2.4999 -1.9598 39 1 2.5648 -3.1269 -0.5081 40 1 0.8646 -2.6001 -0.5006 41 1 1.1026 -4.8617 0.9459 42 1 3.2260 -4.3694 3.5431 43 1 2.4140 -5.5405 4.6092 44 1 3.9919 -6.6803 3.0726 45 1 3.1247 -5.9981 1.6761 46 1 1.9239 -7.8484 3.7860 47 1 2.3871 -8.3210 2.1339 48 1 -0.8748 -8.2415 3.0578 49 1 -1.9529 -11.6818 0.3437 50 1 0.0569 -6.2273 4.1450 51 1 -0.8104 -5.5452 2.7485 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981534941.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:58:54 Heat of formation + Delta-G solvation = 82.387417 kcal Electronic energy + Delta-G solvation = -30542.545626 eV Core-core repulsion = 26479.564184 eV Total energy + Delta-G solvation = -4062.981442 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.38913 -40.21925 -38.17628 -37.46629 -34.69894 -34.13176 -33.29951 -32.70314 -31.41615 -30.14849 -28.88217 -28.28599 -27.43469 -23.99723 -23.58558 -22.72216 -22.48011 -21.84801 -21.00607 -20.49484 -19.99954 -19.06280 -17.73796 -17.53518 -17.26789 -16.08926 -15.90085 -15.64840 -15.56305 -15.12038 -14.93156 -14.60530 -14.13375 -14.01778 -13.84649 -13.72263 -13.58809 -13.47054 -12.91840 -12.79428 -12.53187 -12.40070 -12.26886 -12.01693 -11.92692 -11.87883 -11.76293 -11.32292 -11.17329 -11.02669 -10.98513 -10.82853 -10.49790 -10.32394 -10.17402 -10.13660 -10.11061 -9.80096 -9.77581 -9.64164 -9.37681 -9.08131 -8.95330 -7.34668 -5.84073 -3.20075 1.33420 2.03631 2.45893 2.51129 3.11353 3.31835 3.34662 3.40566 3.55660 3.70215 4.09652 4.20322 4.52505 4.53620 4.56763 4.58736 4.67920 4.80041 4.86442 4.86868 4.96954 5.02365 5.03087 5.11313 5.31284 5.32306 5.38064 5.42717 5.49878 5.53043 5.55980 5.71660 5.78863 5.81831 5.84035 5.89358 5.96178 6.06145 6.10491 6.18214 6.24408 6.34240 6.36439 6.49936 6.54585 6.57873 6.79331 6.93560 7.40131 7.91080 7.94535 8.07800 8.34855 9.13014 9.85794 10.05030 11.34018 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.020486 B = 0.002053 C = 0.001995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1366.486328 B =13635.997618 C =14035.024387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.372 5.372 3 N -0.316 5.316 4 C 0.255 3.745 5 C -0.070 4.070 6 C -0.161 4.161 7 C -0.159 4.159 8 N -0.526 5.526 9 C 0.305 3.695 10 C -0.070 4.070 11 C 0.520 3.480 12 O -0.533 6.533 13 N -0.714 5.714 14 C 0.154 3.846 15 H 0.084 0.916 16 C -0.129 4.129 17 C -0.115 4.115 18 C -0.138 4.138 19 C 0.185 3.815 20 H 0.051 0.949 21 N -0.749 5.749 22 C -0.244 4.244 23 H 0.090 0.910 24 C 0.005 3.995 25 N -0.933 5.933 26 Si 0.884 3.116 27 H -0.285 1.285 28 H -0.291 1.291 29 H -0.277 1.277 30 C -0.137 4.137 31 H 0.082 0.918 32 H 0.093 0.907 33 H 0.092 0.908 34 H 0.131 0.869 35 H 0.103 0.897 36 H 0.103 0.897 37 H 0.104 0.896 38 H 0.095 0.905 39 H 0.134 0.866 40 H 0.118 0.882 41 H 0.406 0.594 42 H 0.062 0.938 43 H 0.069 0.931 44 H 0.055 0.945 45 H 0.058 0.942 46 H 0.054 0.946 47 H 0.066 0.934 48 H 0.361 0.639 49 H 0.260 0.740 50 H 0.075 0.925 51 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.670 24.049 -0.630 25.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.162 5.162 3 N -0.145 5.145 4 C -0.026 4.026 5 C -0.091 4.091 6 C -0.199 4.199 7 C -0.198 4.198 8 N -0.253 5.253 9 C 0.028 3.972 10 C -0.112 4.112 11 C 0.304 3.696 12 O -0.410 6.410 13 N -0.367 5.367 14 C 0.050 3.950 15 H 0.102 0.898 16 C -0.167 4.167 17 C -0.153 4.153 18 C -0.178 4.178 19 C 0.075 3.925 20 H 0.069 0.931 21 N -0.391 5.391 22 C -0.374 4.374 23 H 0.108 0.892 24 C -0.191 4.191 25 N -0.580 5.580 26 Si 0.715 3.285 27 H -0.211 1.211 28 H -0.218 1.218 29 H -0.203 1.203 30 C -0.176 4.176 31 H 0.100 0.900 32 H 0.112 0.888 33 H 0.111 0.889 34 H 0.149 0.851 35 H 0.121 0.879 36 H 0.121 0.879 37 H 0.122 0.878 38 H 0.114 0.886 39 H 0.152 0.848 40 H 0.136 0.864 41 H 0.242 0.758 42 H 0.081 0.919 43 H 0.088 0.912 44 H 0.074 0.926 45 H 0.077 0.923 46 H 0.073 0.927 47 H 0.085 0.915 48 H 0.194 0.806 49 H 0.070 0.930 50 H 0.094 0.906 51 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 7.813 24.980 -0.189 26.175 hybrid contribution -1.239 -0.977 0.730 1.739 sum 6.574 24.003 0.540 24.893 Atomic orbital electron populations 1.21983 0.73785 1.04796 1.04216 1.50061 1.07794 1.03737 1.54631 1.77910 1.01331 1.07473 1.27750 1.23018 0.92386 0.89209 0.98017 1.20047 0.93491 0.89881 1.05645 1.23029 1.03783 0.93723 0.99354 1.23026 1.03195 1.01838 0.91708 1.70218 1.19387 1.10827 1.24892 1.23256 0.86100 0.91352 0.96490 1.20221 1.05247 0.88424 0.97349 1.20019 0.77197 0.82362 0.90047 1.90753 1.49222 1.54915 1.46087 1.46133 1.68589 1.12178 1.09810 1.20935 0.95791 0.96354 0.81964 0.89783 1.21907 0.96535 0.98519 0.99759 1.21494 0.98623 0.95604 0.99596 1.22258 0.96525 0.97402 1.01607 1.20124 0.88843 0.87008 0.96478 0.93111 1.42793 1.43374 1.30434 1.22474 1.19045 1.17331 1.03481 0.97565 0.89202 1.24681 0.99496 0.97493 0.97446 1.69701 1.39567 1.17006 1.31731 0.86558 0.81427 0.77136 0.83410 1.21140 1.21791 1.20341 1.22177 0.98223 0.95213 1.02006 0.89950 0.88838 0.88945 0.85147 0.87903 0.87877 0.87756 0.88617 0.84802 0.86411 0.75752 0.91888 0.91194 0.92627 0.92347 0.92687 0.91529 0.80640 0.93037 0.90590 0.91104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.68 11.33 59.85 0.68 1.36 16 2 N -0.37 -4.36 4.04 -65.10 -0.26 -4.63 16 3 N -0.32 -4.25 12.24 32.42 0.40 -3.85 16 4 C 0.26 3.44 7.69 -156.86 -1.21 2.23 16 5 C -0.07 -0.71 6.33 -91.77 -0.58 -1.29 16 6 C -0.16 -1.29 10.13 -26.73 -0.27 -1.56 16 7 C -0.16 -1.23 10.23 -26.73 -0.27 -1.51 16 8 N -0.53 -7.58 11.19 -8.16 -0.09 -7.67 16 9 C 0.31 3.76 6.48 -155.70 -1.01 2.75 16 10 C -0.07 -0.62 6.03 -29.04 -0.18 -0.80 16 11 C 0.52 6.07 7.79 -10.99 -0.09 5.99 16 12 O -0.53 -8.43 15.70 5.56 0.09 -8.34 16 13 N -0.71 -7.69 4.23 -53.81 -0.23 -7.92 16 14 C 0.15 1.86 2.78 -67.93 -0.19 1.67 16 15 H 0.08 1.07 7.58 -51.93 -0.39 0.68 16 16 C -0.13 -1.58 5.60 -26.73 -0.15 -1.73 16 17 C -0.11 -1.48 5.76 -26.73 -0.15 -1.63 16 18 C -0.14 -2.16 5.50 -26.73 -0.15 -2.31 16 19 C 0.19 3.05 2.60 -67.93 -0.18 2.88 16 20 H 0.05 0.83 6.44 -51.93 -0.33 0.49 16 21 N -0.75 -16.13 4.92 -53.43 -0.26 -16.39 16 22 C -0.24 -6.43 10.41 -15.06 -0.16 -6.58 16 23 H 0.09 2.53 8.06 -52.48 -0.42 2.10 16 24 C 0.00 0.13 5.50 -17.43 -0.10 0.04 16 25 N -0.93 -28.21 13.97 55.49 0.78 -27.43 16 26 Si 0.88 21.24 27.73 -169.99 -4.71 16.53 16 27 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 28 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 29 H -0.28 -6.27 6.52 56.52 0.37 -5.90 16 30 C -0.14 -1.84 5.07 -26.73 -0.14 -1.98 16 31 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.09 0.55 8.14 -51.93 -0.42 0.12 16 33 H 0.09 0.41 7.10 -51.93 -0.37 0.04 16 34 H 0.13 1.21 8.14 -51.93 -0.42 0.78 16 35 H 0.10 0.93 7.87 -51.93 -0.41 0.52 16 36 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.10 0.60 8.14 -51.93 -0.42 0.17 16 38 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.13 0.99 8.14 -51.93 -0.42 0.57 16 40 H 0.12 0.63 7.12 -51.93 -0.37 0.26 16 41 H 0.41 3.91 6.87 -40.82 -0.28 3.63 16 42 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 43 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 44 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 45 H 0.06 0.73 7.60 -51.93 -0.39 0.33 16 46 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 47 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 48 H 0.36 7.76 5.66 -40.82 -0.23 7.53 16 49 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 50 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 51 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 LS Contribution 410.60 15.07 6.19 6.19 Total: -1.00 -35.96 410.60 -10.53 -46.49 By element: Atomic # 1 Polarization: 17.81 SS G_CDS: -8.29 Total: 9.51 kcal Atomic # 6 Polarization: 1.66 SS G_CDS: -4.13 Total: -2.47 kcal Atomic # 7 Polarization: -68.23 SS G_CDS: 0.33 Total: -67.90 kcal Atomic # 8 Polarization: -8.43 SS G_CDS: 0.09 Total: -8.34 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -4.71 Total: 16.53 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -35.96 -10.53 -46.49 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981534941.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.873 kcal (2) G-P(sol) polarization free energy of solvation -35.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.486 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds