Wall clock time and date at job start Wed Apr 1 2020 05:58:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 N 1.40445 * 126.81984 * 2 1 4 4 C 1.30711 * 106.79006 * 180.26054 * 3 2 1 5 5 C 1.50697 * 125.52631 * 179.79195 * 4 3 2 6 6 C 1.53001 * 117.50216 * 8.57992 * 5 4 3 7 7 C 1.53004 * 60.00176 * 252.51569 * 6 5 4 8 8 N 1.33241 * 108.94672 * 359.75684 * 4 3 2 9 9 C 1.30832 * 109.83090 * 359.97438 * 8 4 3 10 10 C 1.50696 * 125.96066 * 180.02562 * 9 8 4 11 11 C 1.50697 * 109.47121 * 90.02785 * 10 9 8 12 12 O 1.21273 * 120.00361 * 359.97438 * 11 10 9 13 13 N 1.34780 * 119.99941 * 180.02562 * 11 10 9 14 14 C 1.46492 * 120.00132 * 179.97438 * 13 11 10 15 15 H 1.09000 * 109.47152 * 34.99769 * 14 13 11 16 16 C 1.52999 * 109.47381 * 274.99545 * 14 13 11 17 17 C 1.52997 * 109.46991 * 300.00228 * 16 14 13 18 18 C 1.52996 * 109.47131 * 299.99311 * 17 16 14 19 19 C 1.53002 * 109.46972 * 60.00459 * 18 17 16 20 20 H 1.08996 * 109.47407 * 59.99513 * 19 18 17 21 21 N 1.46496 * 109.47037 * 180.02562 * 19 18 17 22 22 C 1.36941 * 119.99878 * 274.99338 * 21 19 18 23 23 H 1.08003 * 119.99725 * 0.02562 * 22 21 19 24 24 C 1.38815 * 119.99972 * 179.97438 * 22 21 19 25 25 N 1.31623 * 119.99409 * 180.02562 * 24 22 21 26 26 Si 1.86790 * 120.00035 * 0.02562 * 24 22 21 27 27 H 1.48498 * 109.47680 * 89.99323 * 26 24 22 28 28 H 1.48503 * 109.47101 * 209.99813 * 26 24 22 29 29 H 1.48499 * 109.47200 * 329.99022 * 26 24 22 30 30 C 1.52997 * 109.46817 * 299.99733 * 19 18 17 31 31 H 1.08997 * 109.46921 * 270.15869 * 1 2 3 32 32 H 1.08995 * 109.47245 * 30.16829 * 1 2 3 33 33 H 1.09007 * 109.46794 * 150.16969 * 1 2 3 34 34 H 1.08997 * 115.55451 * 154.29166 * 5 4 3 35 35 H 1.09002 * 117.49073 * 0.02562 * 6 5 4 36 36 H 1.08993 * 117.49861 * 145.01953 * 6 5 4 37 37 H 1.09005 * 117.49150 * 252.50875 * 7 6 5 38 38 H 1.08989 * 117.52202 * 107.48084 * 7 6 5 39 39 H 1.09000 * 109.47074 * 330.02241 * 10 9 8 40 40 H 1.09007 * 109.46939 * 210.02727 * 10 9 8 41 41 H 0.97006 * 119.99905 * 359.97438 * 13 11 10 42 42 H 1.09002 * 109.46719 * 59.99939 * 16 14 13 43 43 H 1.08993 * 109.47839 * 179.97438 * 16 14 13 44 44 H 1.09001 * 109.47289 * 179.97438 * 17 16 14 45 45 H 1.09000 * 109.47611 * 59.99933 * 17 16 14 46 46 H 1.08996 * 109.47452 * 300.00000 * 18 17 16 47 47 H 1.09000 * 109.47054 * 180.02562 * 18 17 16 48 48 H 0.97001 * 120.00575 * 95.00206 * 21 19 18 49 49 H 0.97000 * 119.99297 * 180.02562 * 25 24 22 50 50 H 1.09001 * 109.47502 * 300.00518 * 30 19 18 51 51 H 1.09001 * 109.47289 * 180.02562 * 30 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 7 2.3067 1.1243 0.0000 4 6 3.5348 0.6766 -0.0057 5 6 4.7775 1.5290 -0.0123 6 6 4.6022 3.0354 0.1899 7 6 4.9710 2.4866 -1.1899 8 7 3.5096 -0.6556 -0.0039 9 6 2.2707 -1.0761 0.0035 10 6 1.8248 -2.5155 0.0083 11 6 1.6832 -2.9928 1.4307 12 8 1.9214 -2.2385 2.3500 13 7 1.2928 -4.2582 1.6812 14 6 1.1556 -4.7224 3.0639 15 1 0.7946 -3.9046 3.6875 16 6 2.5159 -5.1955 3.5804 17 6 3.0226 -6.3434 2.7049 18 6 2.0259 -7.5030 2.7572 19 6 0.6656 -7.0299 2.2407 20 1 0.7676 -6.6846 1.2120 21 7 -0.2890 -8.1401 2.2913 22 6 -0.3543 -9.0346 1.2565 23 1 0.2981 -8.9218 0.4032 24 6 -1.2585 -10.0868 1.3047 25 7 -1.3209 -10.9468 0.3102 26 14 -2.3863 -10.2822 2.7807 27 1 -3.6477 -9.5357 2.5423 28 1 -2.6932 -11.7212 2.9822 29 1 -1.7147 -9.7452 3.9914 30 6 0.1589 -5.8820 3.1161 31 1 -0.3633 0.0028 1.0276 32 1 -0.3633 0.8884 -0.5164 33 1 -0.3633 -0.8916 -0.5112 34 1 5.6685 1.0645 0.4102 35 1 3.5879 3.4098 0.3283 36 1 5.3777 3.5621 0.7459 37 1 5.9893 2.6525 -1.5416 38 1 4.1997 2.4999 -1.9598 39 1 2.5648 -3.1269 -0.5081 40 1 0.8646 -2.6001 -0.5006 41 1 1.1026 -4.8617 0.9459 42 1 3.2260 -4.3694 3.5431 43 1 2.4140 -5.5405 4.6092 44 1 3.9919 -6.6803 3.0726 45 1 3.1247 -5.9981 1.6761 46 1 1.9239 -7.8484 3.7860 47 1 2.3871 -8.3210 2.1339 48 1 -0.8748 -8.2415 3.0578 49 1 -1.9529 -11.6818 0.3437 50 1 0.0569 -6.2273 4.1450 51 1 -0.8104 -5.5452 2.7485 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981534941.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:58:53 Heat of formation + Delta-G solvation = 58.838141 kcal Electronic energy + Delta-G solvation = -30543.566800 eV Core-core repulsion = 26479.564184 eV Total energy + Delta-G solvation = -4064.002616 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -43.25623 -41.23590 -39.32132 -38.16382 -36.24300 -34.91048 -34.49810 -33.68559 -33.15591 -31.20418 -30.11053 -29.41801 -28.15586 -25.36281 -24.75603 -23.60699 -23.29713 -22.89600 -22.35813 -21.36403 -20.83471 -20.32157 -19.45966 -18.49387 -18.04838 -17.03657 -16.87791 -16.67685 -16.50171 -16.28266 -16.15923 -15.66273 -15.35419 -15.13056 -14.94235 -14.65105 -14.61936 -14.38870 -14.19167 -14.16773 -13.74745 -13.22168 -13.13655 -13.07449 -12.99003 -12.96932 -12.83357 -12.68935 -12.40437 -12.35193 -11.98321 -11.87864 -11.78514 -11.59395 -11.50563 -11.48285 -11.13825 -11.04666 -11.01696 -10.85230 -10.72132 -10.18668 -10.04576 -9.24948 -7.97100 -5.29387 0.46018 1.30340 1.41635 1.43859 1.51207 1.56453 1.63647 2.24477 2.52746 2.80546 2.98848 3.34423 3.36079 3.47976 3.49021 3.80325 3.87985 3.88789 3.93587 4.01117 4.06600 4.20439 4.22885 4.27902 4.30150 4.35731 4.42955 4.55754 4.57534 4.61896 4.67690 4.72004 4.73930 4.81876 4.89689 4.94876 5.10818 5.11299 5.18286 5.22465 5.23786 5.28231 5.37059 5.39244 5.49300 5.53008 5.65551 5.77738 5.84593 6.27155 6.51236 7.04926 7.14045 7.18852 7.91284 8.08438 9.24165 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.020486 B = 0.002053 C = 0.001995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1366.486328 B =13635.997618 C =14035.024387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.375 5.375 3 N -0.340 5.340 4 C 0.240 3.760 5 C -0.096 4.096 6 C -0.152 4.152 7 C -0.143 4.143 8 N -0.562 5.562 9 C 0.296 3.704 10 C -0.065 4.065 11 C 0.525 3.475 12 O -0.576 6.576 13 N -0.706 5.706 14 C 0.161 3.839 15 H 0.084 0.916 16 C -0.123 4.123 17 C -0.105 4.105 18 C -0.130 4.130 19 C 0.178 3.822 20 H 0.054 0.946 21 N -0.752 5.752 22 C -0.219 4.219 23 H 0.062 0.938 24 C -0.067 4.067 25 N -0.985 5.985 26 Si 0.950 3.050 27 H -0.279 1.279 28 H -0.304 1.304 29 H -0.252 1.252 30 C -0.124 4.124 31 H 0.080 0.920 32 H 0.104 0.896 33 H 0.124 0.876 34 H 0.134 0.866 35 H 0.089 0.911 36 H 0.126 0.874 37 H 0.129 0.871 38 H 0.086 0.914 39 H 0.151 0.849 40 H 0.159 0.841 41 H 0.413 0.587 42 H 0.055 0.945 43 H 0.078 0.922 44 H 0.063 0.937 45 H 0.063 0.937 46 H 0.053 0.947 47 H 0.038 0.962 48 H 0.364 0.636 49 H 0.255 0.745 50 H 0.083 0.917 51 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.452 25.528 0.183 26.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.165 5.165 3 N -0.170 5.170 4 C -0.041 4.041 5 C -0.117 4.117 6 C -0.189 4.189 7 C -0.182 4.182 8 N -0.290 5.290 9 C 0.019 3.981 10 C -0.107 4.107 11 C 0.311 3.689 12 O -0.456 6.456 13 N -0.359 5.359 14 C 0.056 3.944 15 H 0.102 0.898 16 C -0.161 4.161 17 C -0.143 4.143 18 C -0.170 4.170 19 C 0.071 3.929 20 H 0.072 0.928 21 N -0.394 5.394 22 C -0.350 4.350 23 H 0.080 0.920 24 C -0.258 4.258 25 N -0.636 5.636 26 Si 0.779 3.221 27 H -0.205 1.205 28 H -0.231 1.231 29 H -0.177 1.177 30 C -0.163 4.163 31 H 0.099 0.901 32 H 0.123 0.877 33 H 0.142 0.858 34 H 0.152 0.848 35 H 0.108 0.892 36 H 0.144 0.856 37 H 0.147 0.853 38 H 0.105 0.895 39 H 0.169 0.831 40 H 0.176 0.824 41 H 0.251 0.749 42 H 0.074 0.926 43 H 0.097 0.903 44 H 0.082 0.918 45 H 0.082 0.918 46 H 0.072 0.928 47 H 0.057 0.943 48 H 0.197 0.803 49 H 0.064 0.936 50 H 0.101 0.899 51 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 7.599 26.505 0.639 27.580 hybrid contribution -1.108 -1.388 0.438 1.829 sum 6.492 25.117 1.077 25.965 Atomic orbital electron populations 1.22351 0.71536 1.06995 1.04769 1.50340 1.09075 1.03191 1.53893 1.77822 1.01707 1.08790 1.28636 1.23602 0.93339 0.89450 0.97735 1.20248 0.92724 0.90661 1.08061 1.23077 1.03799 0.92213 0.99856 1.23086 1.04220 0.99831 0.91025 1.70195 1.20961 1.11535 1.26279 1.23777 0.85913 0.92622 0.95798 1.20387 1.07857 0.86610 0.95850 1.20367 0.76005 0.81908 0.90667 1.90745 1.51171 1.56007 1.47659 1.46048 1.68110 1.12139 1.09604 1.20798 0.95236 0.95675 0.82676 0.89837 1.21853 0.96350 0.97790 1.00143 1.21397 0.98100 0.94611 1.00231 1.22108 0.96607 0.97597 1.00716 1.20384 0.88265 0.86580 0.97706 0.92764 1.42834 1.44482 1.30839 1.21267 1.19022 1.15152 1.03402 0.97459 0.92047 1.25456 1.02009 0.97830 1.00533 1.69881 1.41154 1.18185 1.34363 0.85473 0.79543 0.76311 0.80792 1.20532 1.23126 1.17691 1.22028 0.98593 0.94056 1.01600 0.90116 0.87748 0.85783 0.84837 0.89233 0.85629 0.85331 0.89525 0.83128 0.82367 0.74859 0.92589 0.90313 0.91844 0.91840 0.92825 0.94329 0.80305 0.93643 0.89861 0.90564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.06 11.33 127.77 1.45 2.50 16 2 N -0.38 -8.46 4.04 -359.87 -1.45 -9.91 16 3 N -0.34 -9.18 12.24 -51.34 -0.63 -9.81 16 4 C 0.24 6.53 7.69 138.63 1.07 7.60 16 5 C -0.10 -1.94 6.33 -11.54 -0.07 -2.01 16 6 C -0.15 -2.32 10.13 30.60 0.31 -2.01 16 7 C -0.14 -2.07 10.23 30.60 0.31 -1.76 16 8 N -0.56 -16.14 11.19 -179.74 -2.01 -18.15 16 9 C 0.30 6.99 6.48 138.23 0.90 7.88 16 10 C -0.07 -1.01 6.03 29.10 0.18 -0.83 16 11 C 0.53 11.19 7.79 87.66 0.68 11.87 16 12 O -0.58 -17.57 15.70 -3.01 -0.05 -17.62 16 13 N -0.71 -13.43 4.23 -442.55 -1.87 -15.30 16 14 C 0.16 3.48 2.78 44.99 0.13 3.60 16 15 H 0.08 1.92 7.58 -2.39 -0.02 1.90 16 16 C -0.12 -2.73 5.60 30.59 0.17 -2.56 16 17 C -0.11 -2.49 5.76 30.59 0.18 -2.31 16 18 C -0.13 -3.90 5.50 30.59 0.17 -3.73 16 19 C 0.18 5.53 2.60 44.99 0.12 5.65 16 20 H 0.05 1.66 6.44 -2.39 -0.02 1.65 16 21 N -0.75 -31.12 4.92 -322.94 -1.59 -32.72 16 22 C -0.22 -11.50 10.41 84.03 0.87 -10.62 16 23 H 0.06 3.52 8.06 -2.91 -0.02 3.50 16 24 C -0.07 -3.76 5.50 84.86 0.47 -3.30 16 25 N -0.98 -60.92 13.97 21.65 0.30 -60.62 16 26 Si 0.95 43.50 27.73 68.60 1.90 45.40 16 27 H -0.28 -12.42 7.11 99.48 0.71 -11.72 16 28 H -0.30 -14.46 7.11 99.48 0.71 -13.75 16 29 H -0.25 -10.35 6.52 99.48 0.65 -9.70 16 30 C -0.12 -2.96 5.07 30.60 0.16 -2.81 16 31 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 32 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 33 H 0.12 0.71 7.10 -2.38 -0.02 0.69 16 34 H 0.13 2.48 8.14 -2.39 -0.02 2.46 16 35 H 0.09 1.61 7.87 -2.39 -0.02 1.60 16 36 H 0.13 1.30 8.14 -2.39 -0.02 1.28 16 37 H 0.13 1.20 8.14 -2.38 -0.02 1.18 16 38 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 39 H 0.15 1.85 8.14 -2.39 -0.02 1.83 16 40 H 0.16 1.08 7.12 -2.38 -0.02 1.06 16 41 H 0.41 6.78 6.87 -92.70 -0.64 6.15 16 42 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 43 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 44 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 45 H 0.06 1.45 7.60 -2.39 -0.02 1.43 16 46 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 47 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 48 H 0.36 14.67 5.66 -92.71 -0.52 14.14 16 49 H 0.25 15.17 8.31 -92.71 -0.77 14.40 16 50 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 51 H 0.08 1.78 8.14 -2.39 -0.02 1.77 16 Total: -1.00 -80.40 410.60 1.40 -78.99 By element: Atomic # 1 Polarization: 32.83 SS G_CDS: -0.27 Total: 32.56 kcal Atomic # 6 Polarization: 0.10 SS G_CDS: 7.07 Total: 7.17 kcal Atomic # 7 Polarization: -139.25 SS G_CDS: -7.25 Total: -146.50 kcal Atomic # 8 Polarization: -17.57 SS G_CDS: -0.05 Total: -17.62 kcal Atomic # 14 Polarization: 43.50 SS G_CDS: 1.90 Total: 45.40 kcal Total: -80.40 1.40 -78.99 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981534941.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.832 kcal (2) G-P(sol) polarization free energy of solvation -80.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.994 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds