Wall clock time and date at job start Wed Apr 1 2020 05:58:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 N 1.40451 * 126.81932 * 2 1 4 4 C 1.30708 * 106.79130 * 180.25837 * 3 2 1 5 5 C 1.50696 * 125.52737 * 179.78684 * 4 3 2 6 6 C 1.53001 * 117.50192 * 8.70065 * 5 4 3 7 7 C 1.53006 * 117.49869 * 300.04073 * 5 4 3 8 8 N 1.33247 * 108.94771 * 359.74665 * 4 3 2 9 9 C 1.30826 * 109.82796 * 0.02562 * 8 4 3 10 10 C 1.50700 * 125.96443 * 179.97438 * 9 8 4 11 11 C 1.50700 * 109.46782 * 90.02314 * 10 9 8 12 12 O 1.21280 * 120.00352 * 0.02562 * 11 10 9 13 13 N 1.34777 * 119.99979 * 180.02562 * 11 10 9 14 14 C 1.46500 * 120.00270 * 180.02562 * 13 11 10 15 15 H 1.09002 * 109.47129 * 325.00460 * 14 13 11 16 16 C 1.53002 * 109.46766 * 85.00180 * 14 13 11 17 17 C 1.52997 * 109.47092 * 180.02562 * 16 14 13 18 18 C 1.53006 * 109.47445 * 300.00075 * 17 16 14 19 19 C 1.53002 * 109.46711 * 59.99695 * 18 17 16 20 20 H 1.09002 * 109.47070 * 60.00376 * 19 18 17 21 21 N 1.46499 * 109.46799 * 180.02562 * 19 18 17 22 22 C 1.36943 * 119.99899 * 275.00081 * 21 19 18 23 23 H 1.07999 * 119.99910 * 359.97438 * 22 21 19 24 24 C 1.38807 * 119.99996 * 180.02562 * 22 21 19 25 25 N 1.31622 * 120.00158 * 359.97438 * 24 22 21 26 26 Si 1.86798 * 120.00037 * 180.02562 * 24 22 21 27 27 H 1.48502 * 109.47189 * 59.99289 * 26 24 22 28 28 H 1.48498 * 109.47253 * 179.97438 * 26 24 22 29 29 H 1.48497 * 109.47290 * 299.99501 * 26 24 22 30 30 C 1.53000 * 109.47233 * 300.00001 * 19 18 17 31 31 H 1.08997 * 109.47284 * 270.17047 * 1 2 3 32 32 H 1.08994 * 109.47448 * 30.17746 * 1 2 3 33 33 H 1.09003 * 109.46558 * 150.17943 * 1 2 3 34 34 H 1.09008 * 115.55368 * 154.37284 * 5 4 3 35 35 H 1.08999 * 117.49644 * 0.02562 * 6 5 4 36 36 H 1.08995 * 117.50060 * 145.01773 * 6 5 4 37 37 H 1.09001 * 117.49713 * 214.97765 * 7 5 4 38 38 H 1.08996 * 117.49495 * 359.97438 * 7 5 4 39 39 H 1.09005 * 109.46679 * 330.03076 * 10 9 8 40 40 H 1.08995 * 109.47770 * 210.02884 * 10 9 8 41 41 H 0.97000 * 120.00239 * 0.02562 * 13 11 10 42 42 H 1.09002 * 109.47067 * 60.00243 * 16 14 13 43 43 H 1.09000 * 109.47312 * 300.00216 * 16 14 13 44 44 H 1.09001 * 109.47375 * 180.02562 * 17 16 14 45 45 H 1.09002 * 109.47497 * 59.99850 * 17 16 14 46 46 H 1.09002 * 109.46589 * 300.00331 * 18 17 16 47 47 H 1.08996 * 109.47165 * 179.97438 * 18 17 16 48 48 H 0.96998 * 120.00630 * 95.00428 * 21 19 18 49 49 H 0.97001 * 119.99843 * 180.02562 * 25 24 22 50 50 H 1.09001 * 109.47194 * 179.97438 * 30 19 18 51 51 H 1.08992 * 109.47399 * 300.00166 * 30 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.3067 1.1244 0.0000 4 6 3.5347 0.6767 -0.0056 5 6 4.7774 1.5291 -0.0124 6 6 4.6023 3.0352 0.1926 7 6 4.9700 2.4880 -1.1890 8 7 3.5096 -0.6555 -0.0036 9 6 2.2708 -1.0760 0.0028 10 6 1.8248 -2.5155 0.0065 11 6 1.6824 -2.9936 1.4285 12 8 1.9193 -2.2396 2.3484 13 7 1.2918 -4.2591 1.6781 14 6 1.1529 -4.7238 3.0604 15 1 1.9171 -4.2546 3.6800 16 6 -0.2332 -4.3476 3.5880 17 6 -0.3782 -4.8323 5.0319 18 6 -0.2098 -6.3524 5.0790 19 6 1.1763 -6.7284 4.5515 20 1 1.9405 -6.2588 5.1708 21 7 1.3373 -8.1839 4.5960 22 6 1.7559 -8.7914 5.7497 23 1 1.9677 -8.1976 6.6266 24 6 1.9090 -10.1704 5.7918 25 7 1.6513 -10.8941 4.7231 26 14 2.4793 -10.9992 7.3658 27 1 1.5116 -10.7121 8.4550 28 1 2.5613 -12.4663 7.1510 29 1 3.8177 -10.4781 7.7427 30 6 1.3212 -6.2438 3.1075 31 1 -0.3634 0.0031 1.0276 32 1 -0.3634 0.8883 -0.5165 33 1 -0.3632 -0.8916 -0.5111 34 1 5.6688 1.0641 0.4090 35 1 3.5882 3.4094 0.3327 36 1 5.3785 3.5610 0.7485 37 1 5.9880 2.6543 -1.5413 38 1 4.1980 2.5020 -1.9583 39 1 2.5652 -3.1265 -0.5099 40 1 0.8649 -2.5998 -0.5031 41 1 1.1027 -4.8624 0.9424 42 1 -0.9974 -4.8169 2.9684 43 1 -0.3530 -3.2647 3.5548 44 1 -1.3658 -4.5648 5.4076 45 1 0.3861 -4.3628 5.6513 46 1 -0.9740 -6.8219 4.4596 47 1 -0.3126 -6.6976 6.1078 48 1 1.1475 -8.7173 3.8084 49 1 1.7580 -11.8578 4.7526 50 1 2.3088 -6.5113 2.7318 51 1 0.5570 -6.7134 2.4882 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981534944.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:58:58 Heat of formation + Delta-G solvation = 76.063808 kcal Electronic energy + Delta-G solvation = -30038.774380 eV Core-core repulsion = 25975.518725 eV Total energy + Delta-G solvation = -4063.255655 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.42981 -40.05873 -38.06787 -37.47962 -34.75622 -34.18018 -33.46777 -32.82047 -31.16004 -30.00207 -28.69868 -27.81884 -27.38799 -24.02661 -23.78378 -22.74059 -22.47474 -21.79320 -20.78127 -20.38815 -20.09633 -19.40356 -17.62618 -17.33429 -16.97000 -16.39703 -16.01775 -15.68318 -15.47747 -15.10819 -14.65711 -14.43367 -14.13347 -13.98110 -13.83864 -13.72332 -13.54785 -13.48910 -13.17619 -12.82038 -12.58609 -12.41775 -12.17869 -12.08042 -11.97229 -11.79535 -11.19953 -11.01945 -10.99539 -10.87898 -10.83794 -10.76806 -10.39732 -10.37830 -10.23623 -10.18407 -10.15964 -9.92704 -9.74440 -9.63429 -9.39938 -9.08109 -8.88336 -6.98170 -5.78401 -3.07100 1.28820 1.99040 2.41664 2.47203 3.05422 3.43574 3.48186 3.48864 3.51784 3.67260 4.04710 4.14619 4.46057 4.53656 4.54478 4.56545 4.65946 4.75370 4.84343 4.93246 4.95214 5.03704 5.03896 5.26354 5.27745 5.31019 5.46885 5.48750 5.56071 5.64476 5.69746 5.77187 5.81922 5.82921 5.92784 5.97959 6.06627 6.09105 6.20548 6.23790 6.27757 6.45260 6.48326 6.51228 6.56902 6.69111 6.93628 7.09207 7.35090 7.69167 7.90598 8.04239 8.40358 9.51576 10.08361 10.43125 11.44163 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.019542 B = 0.001827 C = 0.001761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1432.450656 B =15324.901593 C =15900.723372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.095 3.905 2 N -0.373 5.373 3 N -0.315 5.315 4 C 0.256 3.744 5 C -0.071 4.071 6 C -0.161 4.161 7 C -0.159 4.159 8 N -0.526 5.526 9 C 0.303 3.697 10 C -0.068 4.068 11 C 0.518 3.482 12 O -0.527 6.527 13 N -0.719 5.719 14 C 0.149 3.851 15 H 0.088 0.912 16 C -0.122 4.122 17 C -0.115 4.115 18 C -0.137 4.137 19 C 0.183 3.817 20 H 0.048 0.952 21 N -0.724 5.724 22 C -0.238 4.238 23 H 0.070 0.930 24 C -0.013 4.013 25 N -0.934 5.934 26 Si 0.906 3.094 27 H -0.286 1.286 28 H -0.291 1.291 29 H -0.286 1.286 30 C -0.129 4.129 31 H 0.082 0.918 32 H 0.093 0.907 33 H 0.090 0.910 34 H 0.131 0.869 35 H 0.103 0.897 36 H 0.103 0.897 37 H 0.104 0.896 38 H 0.095 0.905 39 H 0.133 0.867 40 H 0.116 0.884 41 H 0.401 0.599 42 H 0.061 0.939 43 H 0.057 0.943 44 H 0.056 0.944 45 H 0.059 0.941 46 H 0.055 0.945 47 H 0.063 0.937 48 H 0.383 0.617 49 H 0.255 0.745 50 H 0.069 0.931 51 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.701 23.959 -15.316 28.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.163 5.163 3 N -0.144 5.144 4 C -0.025 4.025 5 C -0.091 4.091 6 C -0.198 4.198 7 C -0.198 4.198 8 N -0.252 5.252 9 C 0.026 3.974 10 C -0.111 4.111 11 C 0.301 3.699 12 O -0.403 6.403 13 N -0.370 5.370 14 C 0.045 3.955 15 H 0.106 0.894 16 C -0.161 4.161 17 C -0.154 4.154 18 C -0.177 4.177 19 C 0.072 3.928 20 H 0.066 0.934 21 N -0.364 5.364 22 C -0.370 4.370 23 H 0.088 0.912 24 C -0.209 4.209 25 N -0.582 5.582 26 Si 0.737 3.263 27 H -0.213 1.213 28 H -0.217 1.217 29 H -0.213 1.213 30 C -0.168 4.168 31 H 0.101 0.899 32 H 0.112 0.888 33 H 0.109 0.891 34 H 0.149 0.851 35 H 0.121 0.879 36 H 0.122 0.878 37 H 0.123 0.877 38 H 0.114 0.886 39 H 0.151 0.849 40 H 0.134 0.866 41 H 0.235 0.765 42 H 0.080 0.920 43 H 0.076 0.924 44 H 0.075 0.925 45 H 0.078 0.922 46 H 0.074 0.926 47 H 0.081 0.919 48 H 0.217 0.783 49 H 0.065 0.935 50 H 0.088 0.912 51 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -2.473 24.967 -14.473 28.965 hybrid contribution -0.252 -1.324 0.293 1.379 sum -2.725 23.643 -14.180 27.704 Atomic orbital electron populations 1.21965 0.73863 1.04656 1.04235 1.50058 1.07762 1.03752 1.54716 1.77918 1.01338 1.07400 1.27709 1.23029 0.92399 0.89172 0.97905 1.20064 0.93501 0.89913 1.05661 1.23042 1.03809 0.93714 0.99284 1.23035 1.03189 1.01843 0.91685 1.70222 1.19369 1.10883 1.24774 1.23249 0.86138 0.91344 0.96667 1.20210 1.04996 0.88510 0.97334 1.20038 0.77235 0.82544 0.90055 1.90780 1.48965 1.54556 1.46008 1.46088 1.68912 1.12244 1.09774 1.21067 0.97996 0.95245 0.81194 0.89392 1.21869 0.96507 1.00398 0.97337 1.21489 1.01094 0.97498 0.95304 1.22295 1.00239 0.93034 1.02134 1.20099 0.94276 0.86365 0.92013 0.93366 1.42382 1.80508 1.00029 1.13483 1.19200 1.36929 0.90081 0.90741 0.91204 1.24732 1.02493 0.96318 0.97397 1.69647 1.55365 1.05366 1.27841 0.86278 0.78602 0.78473 0.82900 1.21294 1.21718 1.21253 1.22093 1.02418 0.92246 1.00035 0.89923 0.88835 0.89108 0.85085 0.87899 0.87827 0.87740 0.88648 0.84883 0.86595 0.76473 0.91998 0.92387 0.92510 0.92185 0.92643 0.91871 0.78328 0.93496 0.91185 0.91629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.61 11.33 59.85 0.68 1.29 16 2 N -0.37 -4.17 4.04 -65.10 -0.26 -4.44 16 3 N -0.32 -4.14 12.24 32.42 0.40 -3.74 16 4 C 0.26 3.41 7.69 -156.85 -1.21 2.21 16 5 C -0.07 -0.71 6.33 -91.77 -0.58 -1.29 16 6 C -0.16 -1.28 10.14 -26.69 -0.27 -1.55 16 7 C -0.16 -1.20 10.24 -26.69 -0.27 -1.48 16 8 N -0.53 -7.46 11.19 -8.16 -0.09 -7.55 16 9 C 0.30 3.58 6.48 -155.70 -1.01 2.58 16 10 C -0.07 -0.54 6.03 -29.03 -0.17 -0.71 16 11 C 0.52 5.88 7.79 -10.99 -0.09 5.80 16 12 O -0.53 -8.55 15.70 5.56 0.09 -8.47 16 13 N -0.72 -7.23 5.08 -53.80 -0.27 -7.51 16 14 C 0.15 1.94 2.45 -67.93 -0.17 1.77 16 15 H 0.09 1.36 7.58 -51.93 -0.39 0.97 16 16 C -0.12 -1.53 5.49 -26.73 -0.15 -1.67 16 17 C -0.12 -1.59 5.92 -26.73 -0.16 -1.75 16 18 C -0.14 -2.32 5.50 -26.73 -0.15 -2.47 16 19 C 0.18 3.45 2.77 -67.93 -0.19 3.27 16 20 H 0.05 0.97 8.08 -51.93 -0.42 0.55 16 21 N -0.72 -17.47 5.12 -53.42 -0.27 -17.74 16 22 C -0.24 -6.49 9.93 -15.06 -0.15 -6.64 16 23 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 24 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 25 N -0.93 -27.69 13.06 55.49 0.72 -26.97 16 26 Si 0.91 22.24 29.55 -169.99 -5.02 17.21 16 27 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 28 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 29 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 30 C -0.13 -1.92 4.86 -26.73 -0.13 -2.05 16 31 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.09 0.48 8.14 -51.93 -0.42 0.05 16 33 H 0.09 0.30 7.10 -51.93 -0.37 -0.07 16 34 H 0.13 1.22 8.14 -51.92 -0.42 0.80 16 35 H 0.10 0.92 7.88 -51.93 -0.41 0.51 16 36 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.13 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.12 0.44 7.12 -51.93 -0.37 0.07 16 41 H 0.40 2.81 8.60 -40.82 -0.35 2.46 16 42 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 44 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 45 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 46 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 47 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 48 H 0.38 9.77 7.80 -40.82 -0.32 9.45 16 49 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 50 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 51 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 LS Contribution 418.16 15.07 6.30 6.30 Total: -1.00 -36.59 418.16 -11.03 -47.63 By element: Atomic # 1 Polarization: 16.99 SS G_CDS: -8.52 Total: 8.48 kcal Atomic # 6 Polarization: 0.91 SS G_CDS: -4.10 Total: -3.20 kcal Atomic # 7 Polarization: -68.17 SS G_CDS: 0.22 Total: -67.95 kcal Atomic # 8 Polarization: -8.55 SS G_CDS: 0.09 Total: -8.47 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.02 Total: 17.21 kcal Total LS contribution 6.30 Total: 6.30 kcal Total: -36.59 -11.03 -47.63 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981534944.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.690 kcal (2) G-P(sol) polarization free energy of solvation -36.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.626 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds