Wall clock time and date at job start Wed Apr 1 2020 05:56:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36942 * 119.99552 * 2 1 4 4 H 1.08000 * 119.99360 * 202.98922 * 3 2 1 5 5 C 1.38809 * 120.00360 * 22.99035 * 3 2 1 6 6 N 1.31618 * 119.99722 * 11.65051 * 5 3 2 7 7 Si 1.86800 * 120.00115 * 191.64543 * 5 3 2 8 8 H 1.48497 * 109.46974 * 0.02562 * 7 5 3 9 9 H 1.48500 * 109.46809 * 120.00093 * 7 5 3 10 10 H 1.48491 * 109.47089 * 240.00242 * 7 5 3 11 11 C 1.46500 * 120.00179 * 179.97438 * 2 1 3 12 12 C 1.53030 * 109.46344 * 300.00068 * 11 2 1 13 13 C 1.53189 * 109.31835 * 181.38494 * 12 11 2 14 14 N 1.46932 * 108.77206 * 305.36633 * 13 12 11 15 15 C 1.34769 * 120.62870 * 233.57939 * 14 13 12 16 16 O 1.21282 * 120.00046 * 0.02562 * 15 14 13 17 17 C 1.50706 * 120.00149 * 180.02562 * 15 14 13 18 18 C 1.50692 * 109.47153 * 180.02562 * 17 15 14 19 19 N 1.30831 * 125.96613 * 270.32680 * 18 17 15 20 20 C 1.33239 * 109.83359 * 180.12378 * 19 18 17 21 21 C 1.50704 * 125.52667 * 179.85690 * 20 19 18 22 22 C 1.52994 * 117.49678 * 188.46768 * 21 20 19 23 23 C 1.52999 * 117.49900 * 119.80730 * 21 20 19 24 24 N 1.30708 * 108.94654 * 359.59654 * 20 19 18 25 25 N 1.34429 * 125.96176 * 90.00301 * 18 17 15 26 26 C 1.46502 * 126.82348 * 359.97438 * 25 18 17 27 27 C 1.46922 * 118.73652 * 53.85765 * 14 13 12 28 28 C 1.53045 * 109.45724 * 60.07143 * 11 2 1 29 29 H 1.09004 * 109.46815 * 273.84338 * 1 2 3 30 30 H 1.08997 * 109.47375 * 33.84550 * 1 2 3 31 31 H 1.09007 * 109.46869 * 153.84485 * 1 2 3 32 32 H 0.97003 * 119.99976 * 180.02562 * 6 5 3 33 33 H 1.09004 * 109.44563 * 180.02562 * 11 2 1 34 34 H 1.09004 * 109.49971 * 61.42951 * 12 11 2 35 35 H 1.09005 * 109.52457 * 301.35115 * 12 11 2 36 36 H 1.08993 * 109.58938 * 185.57663 * 13 12 11 37 37 H 1.09002 * 109.70265 * 65.21875 * 13 12 11 38 38 H 1.08997 * 109.46612 * 60.00324 * 17 15 14 39 39 H 1.08997 * 109.46803 * 300.00358 * 17 15 14 40 40 H 1.08995 * 115.54730 * 334.13579 * 21 20 19 41 41 H 1.09007 * 117.50231 * 0.02562 * 22 21 20 42 42 H 1.09009 * 117.49861 * 145.01954 * 22 21 20 43 43 H 1.08999 * 117.49724 * 214.97675 * 23 21 20 44 44 H 1.08998 * 117.49983 * 359.97438 * 23 21 20 45 45 H 1.08995 * 109.47397 * 270.02122 * 26 25 18 46 46 H 1.09001 * 109.46532 * 30.02154 * 26 25 18 47 47 H 1.09005 * 109.47010 * 150.01756 * 26 25 18 48 48 H 1.09005 * 109.58902 * 65.93202 * 27 14 13 49 49 H 1.09006 * 109.58411 * 186.34894 * 27 14 13 50 50 H 1.08997 * 109.49307 * 298.56352 * 28 11 2 51 51 H 1.08995 * 109.50167 * 58.62895 * 28 11 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1860 0.0000 4 1 3.1653 1.2231 -0.3653 5 6 1.5383 2.3404 0.4695 6 7 0.3979 2.2623 1.1220 7 14 2.3340 4.0046 0.1754 8 1 3.6010 3.8213 -0.5772 9 1 1.4114 4.8623 -0.6109 10 1 2.6220 4.6530 1.4798 11 6 2.1976 -1.2687 0.0006 12 6 1.8277 -2.0705 1.2505 13 6 2.6214 -3.3807 1.2653 14 7 2.3851 -4.0909 0.0009 15 6 1.9590 -5.3695 0.0009 16 8 1.7666 -5.9446 1.0512 17 6 1.7217 -6.0847 -1.3043 18 6 1.2525 -7.4900 -1.0289 19 7 2.0181 -8.5407 -0.8816 20 6 1.2682 -9.6179 -0.6528 21 6 1.7871 -11.0159 -0.4346 22 6 0.7616 -12.1502 -0.3844 23 6 1.4590 -11.6911 0.8986 24 7 0.0098 -9.2647 -0.6428 25 7 -0.0254 -7.8818 -0.8858 26 6 -1.2178 -7.0345 -0.9659 27 6 2.6280 -3.3827 -1.2632 28 6 1.8290 -2.0708 -1.2497 29 1 -0.3633 0.0689 1.0254 30 1 -0.3634 0.8535 -0.5723 31 1 -0.3633 -0.9225 -0.4530 32 1 -0.0296 3.0690 1.4498 33 1 3.2691 -1.0690 0.0009 34 1 0.7605 -2.2917 1.2383 35 1 2.0686 -1.4892 2.1406 36 1 2.2900 -3.9992 2.0993 37 1 3.6847 -3.1651 1.3700 38 1 2.6497 -6.1164 -1.8751 39 1 0.9611 -5.5536 -1.8765 40 1 2.7562 -11.2330 -0.8837 41 1 -0.2884 -11.8854 -0.5097 42 1 1.0563 -13.1138 -0.8002 43 1 2.2121 -12.3529 1.3263 44 1 0.8682 -11.1241 1.6180 45 1 -1.4548 -6.6460 0.0246 46 1 -1.0283 -6.2041 -1.6461 47 1 -2.0575 -7.6230 -1.3358 48 1 3.6916 -3.1651 -1.3617 49 1 2.3011 -4.0027 -2.0980 50 1 0.7617 -2.2920 -1.2384 51 1 2.0706 -1.4893 -2.1393 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000985798559.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:56:17 Heat of formation + Delta-G solvation = 109.182181 kcal Electronic energy + Delta-G solvation = -30847.534481 eV Core-core repulsion = 26785.714947 eV Total energy + Delta-G solvation = -4061.819534 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.35268 -40.10942 -37.70402 -37.37611 -35.14327 -34.08700 -33.04001 -32.15510 -30.91803 -29.89637 -28.87784 -27.46027 -26.06000 -24.90804 -23.95167 -23.02390 -22.65667 -22.32724 -21.06885 -20.20312 -19.64117 -18.58307 -17.44779 -17.19736 -16.80949 -16.23330 -15.67435 -15.60560 -15.45638 -15.09778 -14.89920 -14.18981 -14.00226 -13.86118 -13.73223 -13.52210 -13.49062 -13.20591 -13.14707 -12.58783 -12.42701 -12.37189 -12.17687 -11.89707 -11.79022 -11.74069 -11.52136 -11.13522 -11.01633 -10.91646 -10.84242 -10.79012 -10.45229 -10.28324 -10.20268 -10.09846 -10.02091 -9.90673 -9.75071 -9.63888 -9.32326 -8.64148 -8.54742 -6.80359 -5.77045 -3.23706 1.37479 2.08966 2.51154 2.54096 3.02612 3.33672 3.41170 3.42810 3.56239 3.74175 4.13572 4.25222 4.38547 4.43678 4.58204 4.60671 4.71430 4.85412 4.89982 4.92797 5.04746 5.14706 5.17833 5.29734 5.34381 5.35265 5.36957 5.44488 5.52805 5.53952 5.70714 5.82325 5.84016 5.86768 5.94451 6.07535 6.14256 6.17750 6.27803 6.28825 6.45771 6.51166 6.59669 6.71695 6.90487 6.94020 7.33725 7.37608 7.68711 7.76370 7.98154 8.08103 8.35439 9.19193 9.82452 10.31478 11.27771 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.030366 B = 0.001983 C = 0.001955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 921.858460 B =14117.207871 C =14318.663371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.165 3.835 2 N -0.596 5.596 3 C -0.255 4.255 4 H 0.069 0.931 5 C 0.001 3.999 6 N -0.907 5.907 7 Si 0.904 3.096 8 H -0.278 1.278 9 H -0.290 1.290 10 H -0.291 1.291 11 C 0.179 3.821 12 C -0.144 4.144 13 C 0.115 3.885 14 N -0.602 5.602 15 C 0.520 3.480 16 O -0.536 6.536 17 C -0.066 4.066 18 C 0.304 3.696 19 N -0.528 5.528 20 C 0.254 3.746 21 C -0.070 4.070 22 C -0.161 4.161 23 C -0.159 4.159 24 N -0.316 5.316 25 N -0.371 5.371 26 C 0.094 3.906 27 C 0.106 3.894 28 C -0.148 4.148 29 H 0.027 0.973 30 H 0.042 0.958 31 H -0.004 1.004 32 H 0.252 0.748 33 H 0.064 0.936 34 H 0.058 0.942 35 H 0.076 0.924 36 H 0.085 0.915 37 H 0.067 0.933 38 H 0.131 0.869 39 H 0.117 0.883 40 H 0.130 0.870 41 H 0.102 0.898 42 H 0.102 0.898 43 H 0.104 0.896 44 H 0.096 0.904 45 H 0.083 0.917 46 H 0.092 0.908 47 H 0.093 0.907 48 H 0.073 0.927 49 H 0.077 0.923 50 H 0.062 0.938 51 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.532 -22.180 -7.210 23.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.318 5.318 3 C -0.384 4.384 4 H 0.086 0.914 5 C -0.197 4.197 6 N -0.552 5.552 7 Si 0.734 3.266 8 H -0.203 1.203 9 H -0.217 1.217 10 H -0.218 1.218 11 C 0.070 3.930 12 C -0.184 4.184 13 C -0.008 4.008 14 N -0.335 5.335 15 C 0.306 3.694 16 O -0.413 6.413 17 C -0.108 4.108 18 C 0.027 3.973 19 N -0.255 5.255 20 C -0.027 4.027 21 C -0.091 4.091 22 C -0.199 4.199 23 C -0.198 4.198 24 N -0.144 5.144 25 N -0.161 5.161 26 C -0.048 4.048 27 C -0.017 4.017 28 C -0.188 4.188 29 H 0.045 0.955 30 H 0.061 0.939 31 H 0.015 0.985 32 H 0.062 0.938 33 H 0.082 0.918 34 H 0.077 0.923 35 H 0.095 0.905 36 H 0.103 0.897 37 H 0.085 0.915 38 H 0.149 0.851 39 H 0.134 0.866 40 H 0.148 0.852 41 H 0.121 0.879 42 H 0.121 0.879 43 H 0.123 0.877 44 H 0.115 0.885 45 H 0.102 0.898 46 H 0.110 0.890 47 H 0.112 0.888 48 H 0.092 0.908 49 H 0.096 0.904 50 H 0.081 0.919 51 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -0.025 -22.715 -6.493 23.625 hybrid contribution 0.167 1.532 -0.126 1.547 sum 0.142 -21.182 -6.619 22.193 Atomic orbital electron populations 1.20732 0.82786 0.95350 0.99099 1.43964 1.01766 1.00175 1.85853 1.19261 0.98287 0.85470 1.35405 0.91354 1.25041 0.97796 0.98570 0.98288 1.70075 1.18515 1.27070 1.39574 0.86193 0.78617 0.84343 0.77438 1.20322 1.21682 1.21757 1.20286 0.96115 0.86079 0.90529 1.22504 0.99886 0.94355 1.01657 1.21727 1.00028 0.93687 0.85321 1.48126 1.65604 1.11295 1.08505 1.19984 0.77594 0.81719 0.90143 1.90747 1.51696 1.65733 1.33122 1.20239 1.05307 0.87025 0.98275 1.23296 0.81483 0.96004 0.96502 1.70203 1.33721 0.97248 1.24326 1.23024 0.86850 0.94906 0.97956 1.20037 1.00472 0.84937 1.03610 1.23040 0.98422 0.97364 1.01079 1.23043 1.03386 1.02653 0.90677 1.77908 1.20432 0.89559 1.26531 1.50062 1.07093 1.06235 1.52692 1.21996 0.85318 0.93366 1.04121 1.21990 1.00887 0.94281 0.84567 1.22565 0.99970 0.94655 1.01591 0.95516 0.93916 0.98549 0.93806 0.91815 0.92294 0.90542 0.89676 0.91496 0.85064 0.86552 0.85187 0.87908 0.87913 0.87749 0.88514 0.89828 0.88984 0.88787 0.90828 0.90441 0.91916 0.90593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.84 8.03 59.85 0.48 4.32 16 2 N -0.60 -13.83 2.81 -173.43 -0.49 -14.32 16 3 C -0.25 -6.63 9.59 -15.06 -0.14 -6.77 16 4 H 0.07 1.74 7.82 -52.49 -0.41 1.33 16 5 C 0.00 0.04 5.12 -17.43 -0.09 -0.05 16 6 N -0.91 -25.74 10.64 55.49 0.59 -25.15 16 7 Si 0.90 21.20 29.57 -169.99 -5.03 16.18 16 8 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 9 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 10 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 11 C 0.18 3.22 2.55 -67.89 -0.17 3.05 16 12 C -0.14 -2.44 5.34 -26.62 -0.14 -2.58 16 13 C 0.11 1.65 6.43 -3.71 -0.02 1.63 16 14 N -0.60 -7.70 2.97 -172.50 -0.51 -8.21 16 15 C 0.52 7.01 7.69 -10.99 -0.08 6.93 16 16 O -0.54 -9.51 15.45 5.56 0.09 -9.43 16 17 C -0.07 -0.66 4.37 -29.04 -0.13 -0.79 16 18 C 0.30 3.99 6.48 -155.70 -1.01 2.98 16 19 N -0.53 -7.88 11.19 -8.16 -0.09 -7.97 16 20 C 0.25 3.54 7.69 -156.86 -1.21 2.34 16 21 C -0.07 -0.73 6.33 -91.77 -0.58 -1.31 16 22 C -0.16 -1.32 10.14 -26.70 -0.27 -1.59 16 23 C -0.16 -1.41 10.24 -26.69 -0.27 -1.68 16 24 N -0.32 -4.44 12.24 32.42 0.40 -4.05 16 25 N -0.37 -4.68 4.04 -65.10 -0.26 -4.94 16 26 C 0.09 0.79 11.33 59.85 0.68 1.47 16 27 C 0.11 1.12 6.37 -3.49 -0.02 1.09 16 28 C -0.15 -2.07 5.34 -26.39 -0.14 -2.21 16 29 H 0.03 0.69 7.42 -51.93 -0.39 0.30 16 30 H 0.04 1.08 7.22 -51.93 -0.37 0.71 16 31 H 0.00 -0.08 6.46 -51.93 -0.34 -0.41 16 32 H 0.25 6.95 8.31 -40.82 -0.34 6.61 16 33 H 0.06 1.17 7.86 -51.93 -0.41 0.76 16 34 H 0.06 1.06 7.72 -51.93 -0.40 0.66 16 35 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 36 H 0.08 1.32 7.00 -51.93 -0.36 0.96 16 37 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 38 H 0.13 1.04 7.93 -51.93 -0.41 0.63 16 39 H 0.12 0.78 6.69 -51.93 -0.35 0.43 16 40 H 0.13 1.17 8.14 -51.93 -0.42 0.75 16 41 H 0.10 0.94 7.88 -51.92 -0.41 0.53 16 42 H 0.10 0.61 8.14 -51.92 -0.42 0.18 16 43 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 44 H 0.10 1.00 8.14 -51.93 -0.42 0.57 16 45 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 46 H 0.09 0.53 7.11 -51.93 -0.37 0.16 16 47 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 48 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 49 H 0.08 0.57 5.93 -51.93 -0.31 0.26 16 50 H 0.06 0.91 6.72 -51.93 -0.35 0.56 16 51 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 LS Contribution 406.73 15.07 6.13 6.13 Total: -1.00 -35.05 406.73 -10.54 -45.59 By element: Atomic # 1 Polarization: 7.58 SS G_CDS: -8.24 Total: -0.66 kcal Atomic # 6 Polarization: 9.95 SS G_CDS: -3.13 Total: 6.82 kcal Atomic # 7 Polarization: -64.27 SS G_CDS: -0.37 Total: -64.63 kcal Atomic # 8 Polarization: -9.51 SS G_CDS: 0.09 Total: -9.43 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.03 Total: 16.18 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -35.05 -10.54 -45.59 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000985798559.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.773 kcal (2) G-P(sol) polarization free energy of solvation -35.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 119.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.591 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds