Wall clock time and date at job start Wed Apr 1 2020 05:56:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36942 * 119.99552 * 2 1 4 4 H 1.08000 * 119.99360 * 202.98922 * 3 2 1 5 5 C 1.38809 * 120.00360 * 22.99035 * 3 2 1 6 6 N 1.31618 * 119.99722 * 11.65051 * 5 3 2 7 7 Si 1.86800 * 120.00115 * 191.64543 * 5 3 2 8 8 H 1.48497 * 109.46974 * 0.02562 * 7 5 3 9 9 H 1.48500 * 109.46809 * 120.00093 * 7 5 3 10 10 H 1.48491 * 109.47089 * 240.00242 * 7 5 3 11 11 C 1.46500 * 120.00179 * 179.97438 * 2 1 3 12 12 C 1.53030 * 109.46344 * 300.00068 * 11 2 1 13 13 C 1.53189 * 109.31835 * 181.38494 * 12 11 2 14 14 N 1.46932 * 108.77206 * 305.36633 * 13 12 11 15 15 C 1.34769 * 120.62870 * 233.57939 * 14 13 12 16 16 O 1.21282 * 120.00046 * 0.02562 * 15 14 13 17 17 C 1.50706 * 120.00149 * 180.02562 * 15 14 13 18 18 C 1.50692 * 109.47153 * 180.02562 * 17 15 14 19 19 N 1.30831 * 125.96613 * 270.32680 * 18 17 15 20 20 C 1.33239 * 109.83359 * 180.12378 * 19 18 17 21 21 C 1.50704 * 125.52667 * 179.85690 * 20 19 18 22 22 C 1.52994 * 117.49678 * 188.46768 * 21 20 19 23 23 C 1.52999 * 117.49900 * 119.80730 * 21 20 19 24 24 N 1.30708 * 108.94654 * 359.59654 * 20 19 18 25 25 N 1.34429 * 125.96176 * 90.00301 * 18 17 15 26 26 C 1.46502 * 126.82348 * 359.97438 * 25 18 17 27 27 C 1.46922 * 118.73652 * 53.85765 * 14 13 12 28 28 C 1.53045 * 109.45724 * 60.07143 * 11 2 1 29 29 H 1.09004 * 109.46815 * 273.84338 * 1 2 3 30 30 H 1.08997 * 109.47375 * 33.84550 * 1 2 3 31 31 H 1.09007 * 109.46869 * 153.84485 * 1 2 3 32 32 H 0.97003 * 119.99976 * 180.02562 * 6 5 3 33 33 H 1.09004 * 109.44563 * 180.02562 * 11 2 1 34 34 H 1.09004 * 109.49971 * 61.42951 * 12 11 2 35 35 H 1.09005 * 109.52457 * 301.35115 * 12 11 2 36 36 H 1.08993 * 109.58938 * 185.57663 * 13 12 11 37 37 H 1.09002 * 109.70265 * 65.21875 * 13 12 11 38 38 H 1.08997 * 109.46612 * 60.00324 * 17 15 14 39 39 H 1.08997 * 109.46803 * 300.00358 * 17 15 14 40 40 H 1.08995 * 115.54730 * 334.13579 * 21 20 19 41 41 H 1.09007 * 117.50231 * 0.02562 * 22 21 20 42 42 H 1.09009 * 117.49861 * 145.01954 * 22 21 20 43 43 H 1.08999 * 117.49724 * 214.97675 * 23 21 20 44 44 H 1.08998 * 117.49983 * 359.97438 * 23 21 20 45 45 H 1.08995 * 109.47397 * 270.02122 * 26 25 18 46 46 H 1.09001 * 109.46532 * 30.02154 * 26 25 18 47 47 H 1.09005 * 109.47010 * 150.01756 * 26 25 18 48 48 H 1.09005 * 109.58902 * 65.93202 * 27 14 13 49 49 H 1.09006 * 109.58411 * 186.34894 * 27 14 13 50 50 H 1.08997 * 109.49307 * 298.56352 * 28 11 2 51 51 H 1.08995 * 109.50167 * 58.62895 * 28 11 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1860 0.0000 4 1 3.1653 1.2231 -0.3653 5 6 1.5383 2.3404 0.4695 6 7 0.3979 2.2623 1.1220 7 14 2.3340 4.0046 0.1754 8 1 3.6010 3.8213 -0.5772 9 1 1.4114 4.8623 -0.6109 10 1 2.6220 4.6530 1.4798 11 6 2.1976 -1.2687 0.0006 12 6 1.8277 -2.0705 1.2505 13 6 2.6214 -3.3807 1.2653 14 7 2.3851 -4.0909 0.0009 15 6 1.9590 -5.3695 0.0009 16 8 1.7666 -5.9446 1.0512 17 6 1.7217 -6.0847 -1.3043 18 6 1.2525 -7.4900 -1.0289 19 7 2.0181 -8.5407 -0.8816 20 6 1.2682 -9.6179 -0.6528 21 6 1.7871 -11.0159 -0.4346 22 6 0.7616 -12.1502 -0.3844 23 6 1.4590 -11.6911 0.8986 24 7 0.0098 -9.2647 -0.6428 25 7 -0.0254 -7.8818 -0.8858 26 6 -1.2178 -7.0345 -0.9659 27 6 2.6280 -3.3827 -1.2632 28 6 1.8290 -2.0708 -1.2497 29 1 -0.3633 0.0689 1.0254 30 1 -0.3634 0.8535 -0.5723 31 1 -0.3633 -0.9225 -0.4530 32 1 -0.0296 3.0690 1.4498 33 1 3.2691 -1.0690 0.0009 34 1 0.7605 -2.2917 1.2383 35 1 2.0686 -1.4892 2.1406 36 1 2.2900 -3.9992 2.0993 37 1 3.6847 -3.1651 1.3700 38 1 2.6497 -6.1164 -1.8751 39 1 0.9611 -5.5536 -1.8765 40 1 2.7562 -11.2330 -0.8837 41 1 -0.2884 -11.8854 -0.5097 42 1 1.0563 -13.1138 -0.8002 43 1 2.2121 -12.3529 1.3263 44 1 0.8682 -11.1241 1.6180 45 1 -1.4548 -6.6460 0.0246 46 1 -1.0283 -6.2041 -1.6461 47 1 -2.0575 -7.6230 -1.3358 48 1 3.6916 -3.1651 -1.3617 49 1 2.3011 -4.0027 -2.0980 50 1 0.7617 -2.2920 -1.2384 51 1 2.0706 -1.4893 -2.1393 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000985798559.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:56:16 Heat of formation + Delta-G solvation = 87.850858 kcal Electronic energy + Delta-G solvation = -30848.459477 eV Core-core repulsion = 26785.714947 eV Total energy + Delta-G solvation = -4062.744530 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -43.26599 -41.20872 -38.99140 -38.16024 -36.69891 -34.92393 -34.17912 -33.61225 -32.08460 -31.44674 -29.86780 -28.24704 -28.00566 -26.30963 -24.76371 -24.17036 -23.87341 -23.30422 -22.15682 -21.17592 -20.75202 -19.73313 -18.74280 -18.44227 -18.04722 -17.25192 -16.91804 -16.61892 -16.46545 -16.37101 -15.73636 -15.68697 -15.20484 -15.07125 -14.93444 -14.67183 -14.46995 -14.35068 -14.17516 -13.87438 -13.77070 -13.19085 -13.14741 -13.11106 -13.06956 -12.79023 -12.68531 -12.64629 -12.42108 -12.31956 -12.16081 -12.00978 -11.88216 -11.79820 -11.58630 -11.48039 -11.22881 -11.07066 -11.05134 -10.71630 -10.60017 -10.19435 -9.69265 -8.73183 -7.79555 -5.27293 0.44959 1.29993 1.47045 1.48964 1.50968 1.58491 1.60476 2.05338 2.52593 2.76134 2.99594 3.33531 3.34557 3.45211 3.53098 3.65909 3.88650 3.93022 3.98982 4.05317 4.14457 4.19946 4.22304 4.25086 4.34488 4.39730 4.42763 4.56153 4.59387 4.61158 4.73564 4.75486 4.84223 4.87941 4.89529 4.95383 5.03739 5.10636 5.14502 5.22477 5.27183 5.29504 5.36801 5.38623 5.54088 5.63511 5.70186 5.76544 5.76908 6.35850 6.38412 7.04033 7.06002 7.19223 7.92935 8.36223 9.23623 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.030366 B = 0.001983 C = 0.001955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 921.858460 B =14117.207871 C =14318.663371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.183 3.817 2 N -0.611 5.611 3 C -0.254 4.254 4 H 0.075 0.925 5 C -0.058 4.058 6 N -0.942 5.942 7 Si 0.965 3.035 8 H -0.263 1.263 9 H -0.294 1.294 10 H -0.298 1.298 11 C 0.170 3.830 12 C -0.130 4.130 13 C 0.125 3.875 14 N -0.599 5.599 15 C 0.521 3.479 16 O -0.586 6.586 17 C -0.059 4.059 18 C 0.295 3.705 19 N -0.559 5.559 20 C 0.239 3.761 21 C -0.091 4.091 22 C -0.143 4.143 23 C -0.157 4.157 24 N -0.341 5.341 25 N -0.376 5.376 26 C 0.085 3.915 27 C 0.110 3.890 28 C -0.136 4.136 29 H -0.008 1.008 30 H 0.013 0.987 31 H 0.031 0.969 32 H 0.245 0.755 33 H 0.062 0.938 34 H 0.044 0.956 35 H 0.047 0.953 36 H 0.070 0.930 37 H 0.081 0.919 38 H 0.160 0.840 39 H 0.158 0.842 40 H 0.142 0.858 41 H 0.089 0.911 42 H 0.131 0.869 43 H 0.128 0.872 44 H 0.075 0.925 45 H 0.074 0.926 46 H 0.125 0.875 47 H 0.106 0.894 48 H 0.091 0.909 49 H 0.124 0.876 50 H 0.060 0.940 51 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.806 -23.569 -9.828 25.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 N -0.333 5.333 3 C -0.384 4.384 4 H 0.093 0.907 5 C -0.253 4.253 6 N -0.590 5.590 7 Si 0.794 3.206 8 H -0.187 1.187 9 H -0.221 1.221 10 H -0.226 1.226 11 C 0.064 3.936 12 C -0.171 4.171 13 C 0.002 3.998 14 N -0.332 5.332 15 C 0.309 3.691 16 O -0.466 6.466 17 C -0.101 4.101 18 C 0.018 3.982 19 N -0.287 5.287 20 C -0.042 4.042 21 C -0.112 4.112 22 C -0.181 4.181 23 C -0.196 4.196 24 N -0.170 5.170 25 N -0.166 5.166 26 C -0.056 4.056 27 C -0.012 4.012 28 C -0.176 4.176 29 H 0.011 0.989 30 H 0.032 0.968 31 H 0.049 0.951 32 H 0.054 0.946 33 H 0.080 0.920 34 H 0.063 0.937 35 H 0.066 0.934 36 H 0.089 0.911 37 H 0.099 0.901 38 H 0.178 0.822 39 H 0.176 0.824 40 H 0.160 0.840 41 H 0.108 0.892 42 H 0.149 0.851 43 H 0.146 0.854 44 H 0.093 0.907 45 H 0.093 0.907 46 H 0.143 0.857 47 H 0.125 0.875 48 H 0.109 0.891 49 H 0.142 0.858 50 H 0.079 0.921 51 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 1.268 -24.119 -9.154 25.829 hybrid contribution -0.232 1.932 0.728 2.077 sum 1.036 -22.188 -8.425 23.756 Atomic orbital electron populations 1.20398 0.83257 0.95699 0.96818 1.44216 1.01829 1.01407 1.85893 1.19638 0.98451 0.86623 1.33690 0.90699 1.25785 0.98618 1.01866 0.98993 1.70249 1.20096 1.27248 1.41388 0.85223 0.78197 0.80366 0.76804 1.18664 1.22139 1.22553 1.20576 0.95513 0.84672 0.92860 1.22277 0.99347 0.95342 1.00096 1.21458 1.00121 0.91950 0.86278 1.48160 1.65151 1.11282 1.08571 1.20551 0.76262 0.81521 0.90806 1.90740 1.53707 1.66842 1.35328 1.20428 1.07986 0.85115 0.96538 1.23835 0.81613 0.96878 0.95902 1.70184 1.34893 0.98115 1.25531 1.23645 0.86874 0.96075 0.97591 1.20284 1.01689 0.84206 1.05003 1.23090 0.97254 0.97635 1.00108 1.23083 1.03809 1.02524 0.90173 1.77827 1.20916 0.90884 1.27402 1.50329 1.08114 1.06008 1.52103 1.22329 0.84677 0.94055 1.04550 1.22187 1.01503 0.92839 0.84655 1.22377 1.00422 0.95832 0.98965 0.98931 0.96776 0.95081 0.94587 0.91975 0.93718 0.93400 0.91141 0.90113 0.82220 0.82433 0.84016 0.89204 0.85050 0.85368 0.90658 0.90725 0.85701 0.87516 0.89076 0.85798 0.92145 0.90116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.64 8.03 127.77 1.03 9.66 16 2 N -0.61 -28.24 2.81 -702.62 -1.97 -30.21 16 3 C -0.25 -13.16 9.59 84.03 0.81 -12.35 16 4 H 0.08 3.72 7.82 -2.91 -0.02 3.69 16 5 C -0.06 -3.17 5.12 84.86 0.43 -2.74 16 6 N -0.94 -55.12 10.64 21.65 0.23 -54.89 16 7 Si 0.96 43.98 29.57 68.60 2.03 46.00 16 8 H -0.26 -11.14 7.11 99.48 0.71 -10.43 16 9 H -0.29 -13.49 7.11 99.48 0.71 -12.79 16 10 H -0.30 -13.83 7.11 99.48 0.71 -13.12 16 11 C 0.17 5.91 2.55 45.02 0.11 6.03 16 12 C -0.13 -4.41 5.34 30.67 0.16 -4.25 16 13 C 0.13 3.47 6.43 86.36 0.56 4.02 16 14 N -0.60 -13.48 2.97 -818.06 -2.43 -15.90 16 15 C 0.52 12.68 7.69 87.66 0.67 13.35 16 16 O -0.59 -20.42 15.45 -3.04 -0.05 -20.46 16 17 C -0.06 -0.94 4.37 29.10 0.13 -0.81 16 18 C 0.29 7.15 6.48 138.22 0.90 8.05 16 19 N -0.56 -16.16 11.19 -179.74 -2.01 -18.17 16 20 C 0.24 6.62 7.69 138.63 1.07 7.68 16 21 C -0.09 -1.84 6.33 -11.54 -0.07 -1.91 16 22 C -0.14 -2.16 10.14 30.62 0.31 -1.85 16 23 C -0.16 -2.68 10.24 30.62 0.31 -2.37 16 24 N -0.34 -9.54 12.24 -51.33 -0.63 -10.17 16 25 N -0.38 -8.99 4.04 -359.87 -1.45 -10.44 16 26 C 0.08 1.25 11.33 127.77 1.45 2.70 16 27 C 0.11 1.77 6.37 86.51 0.55 2.32 16 28 C -0.14 -3.34 5.34 30.82 0.16 -3.17 16 29 H -0.01 -0.41 7.42 -2.38 -0.02 -0.43 16 30 H 0.01 0.71 7.22 -2.39 -0.02 0.69 16 31 H 0.03 1.21 6.46 -2.38 -0.02 1.20 16 32 H 0.24 14.02 8.31 -92.71 -0.77 13.25 16 33 H 0.06 2.17 7.86 -2.38 -0.02 2.15 16 34 H 0.04 1.62 7.72 -2.38 -0.02 1.60 16 35 H 0.05 1.87 8.14 -2.38 -0.02 1.85 16 36 H 0.07 2.20 7.00 -2.39 -0.02 2.18 16 37 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 38 H 0.16 1.67 7.93 -2.39 -0.02 1.65 16 39 H 0.16 1.16 6.69 -2.39 -0.02 1.14 16 40 H 0.14 2.40 8.14 -2.39 -0.02 2.38 16 41 H 0.09 1.61 7.88 -2.38 -0.02 1.59 16 42 H 0.13 1.21 8.14 -2.38 -0.02 1.19 16 43 H 0.13 1.51 8.14 -2.39 -0.02 1.49 16 44 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 45 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 46 H 0.12 0.96 7.11 -2.39 -0.02 0.94 16 47 H 0.11 1.27 8.14 -2.38 -0.02 1.25 16 48 H 0.09 1.28 8.14 -2.38 -0.02 1.26 16 49 H 0.12 0.96 5.93 -2.38 -0.01 0.94 16 50 H 0.06 1.53 6.72 -2.39 -0.02 1.51 16 51 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 Total: -1.00 -81.13 406.73 3.22 -77.91 By element: Atomic # 1 Polarization: 11.05 SS G_CDS: 0.93 Total: 11.98 kcal Atomic # 6 Polarization: 15.79 SS G_CDS: 8.58 Total: 24.37 kcal Atomic # 7 Polarization: -131.53 SS G_CDS: -8.26 Total: -139.79 kcal Atomic # 8 Polarization: -20.42 SS G_CDS: -0.05 Total: -20.46 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 2.03 Total: 46.00 kcal Total: -81.13 3.22 -77.91 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000985798559.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.757 kcal (2) G-P(sol) polarization free energy of solvation -81.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.906 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds