Wall clock time and date at job start Wed Apr 1 2020 05:49:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.35314 * 125.86548 * 2 1 4 4 C 1.35348 * 106.17576 * 180.25015 * 3 2 1 5 5 C 1.50696 * 126.75368 * 179.77437 * 4 3 2 6 6 C 1.53002 * 109.47196 * 124.99957 * 5 4 3 7 7 C 1.50694 * 109.47508 * 180.02562 * 6 5 4 8 8 O 1.21288 * 119.99952 * 359.97438 * 7 6 5 9 9 N 1.34776 * 120.00472 * 180.02562 * 7 6 5 10 10 C 1.48244 * 125.78045 * 0.02562 * 9 7 6 11 11 C 1.52331 * 105.86628 * 176.80579 * 10 9 7 12 12 H 1.09003 * 109.88126 * 272.31971 * 11 10 9 13 13 C 1.51442 * 117.44946 * 145.30341 * 11 10 9 14 14 C 1.51847 * 108.07191 * 182.01773 * 13 11 10 15 15 C 1.52529 * 111.84352 * 56.52700 * 14 13 11 16 16 C 1.53813 * 111.70255 * 306.38488 * 15 14 13 17 17 H 1.08998 * 109.94265 * 176.91482 * 16 15 14 18 18 N 1.46495 * 110.01678 * 298.12293 * 16 15 14 19 19 C 1.36936 * 120.00170 * 206.74384 * 18 16 15 20 20 H 1.07998 * 119.99894 * 0.02562 * 19 18 16 21 21 C 1.38804 * 120.00054 * 179.97438 * 19 18 16 22 22 N 1.31619 * 120.00407 * 0.02562 * 21 19 18 23 23 Si 1.86808 * 119.99968 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47090 * 359.97438 * 23 21 19 25 25 H 1.48496 * 109.46985 * 120.00106 * 23 21 19 26 26 H 1.48501 * 109.46958 * 240.00006 * 23 21 19 27 27 C 1.51623 * 107.01627 * 57.53875 * 16 15 14 28 28 H 1.08998 * 110.50057 * 55.19194 * 27 16 15 29 29 C 1.48660 * 125.78615 * 179.71579 * 9 7 6 30 30 N 1.33775 * 106.49351 * 359.64299 * 4 3 2 31 31 N 1.28628 * 108.88651 * 0.36884 * 30 4 3 32 32 H 1.09000 * 109.46806 * 90.00046 * 1 2 3 33 33 H 1.09000 * 109.46739 * 209.99844 * 1 2 3 34 34 H 1.08996 * 109.46904 * 329.99816 * 1 2 3 35 35 H 1.08003 * 126.91265 * 359.97438 * 3 2 1 36 36 H 1.09000 * 109.47482 * 244.99865 * 5 4 3 37 37 H 1.08999 * 109.47142 * 5.00041 * 5 4 3 38 38 H 1.09000 * 109.46830 * 300.00307 * 6 5 4 39 39 H 1.08999 * 109.47007 * 60.00001 * 6 5 4 40 40 H 1.09002 * 110.17085 * 295.89959 * 10 9 7 41 41 H 1.09001 * 110.17094 * 57.70578 * 10 9 7 42 42 H 1.09001 * 109.93463 * 300.62989 * 13 11 10 43 43 H 1.09000 * 109.93977 * 61.85840 * 13 11 10 44 44 H 1.09000 * 108.60602 * 296.14219 * 14 13 11 45 45 H 1.09003 * 109.29390 * 177.37891 * 14 13 11 46 46 H 1.09000 * 109.03158 * 185.81459 * 15 14 13 47 47 H 1.09002 * 108.97629 * 66.92082 * 15 14 13 48 48 H 0.97006 * 119.99654 * 26.74705 * 18 16 15 49 49 H 0.97004 * 120.00485 * 179.97438 * 22 21 19 50 50 H 1.08997 * 110.62730 * 274.11920 * 29 9 7 51 51 H 1.08997 * 110.62520 * 37.14430 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2578 1.0966 0.0000 4 6 3.5322 0.6406 -0.0057 5 6 4.7880 1.4736 -0.0127 6 6 5.6761 1.0673 1.1651 7 6 6.9316 1.9007 1.1584 8 8 7.0998 2.7370 0.2962 9 7 7.8681 1.7162 2.1100 10 6 7.7961 0.7340 3.2180 11 6 9.1169 0.8540 3.9674 12 1 9.8603 0.1972 3.5157 13 6 9.0880 0.6576 5.4687 14 6 10.4948 0.8715 5.9989 15 6 11.0425 2.2431 5.6176 16 6 10.9554 2.4890 4.1017 17 1 11.3026 3.4954 3.8678 18 7 11.7673 1.5016 3.3861 19 6 12.2907 1.8063 2.1580 20 1 12.1054 2.7746 1.7171 21 6 13.0604 0.8709 1.4802 22 7 13.2867 -0.3090 2.0176 23 14 13.7751 1.2868 -0.1949 24 1 13.3767 2.6661 -0.5745 25 1 15.2562 1.1969 -0.1373 26 1 13.2598 0.3277 -1.2049 27 6 9.4978 2.3409 3.7112 28 1 8.8734 3.0065 4.3072 29 6 9.1511 2.4585 2.2225 30 7 3.4576 -0.6951 -0.0008 31 7 2.2193 -1.0430 -0.0005 32 1 -0.3633 0.0000 -1.0277 33 1 -0.3633 -0.8900 0.5138 34 1 -0.3633 0.8899 0.5138 35 1 1.9381 2.1282 -0.0004 36 1 5.3263 1.3114 -0.9465 37 1 4.5253 2.5276 0.0769 38 1 5.1377 1.2295 2.0988 39 1 5.9387 0.0133 1.0754 40 1 6.9648 0.9751 3.8806 41 1 7.6800 -0.2740 2.8198 42 1 8.4247 1.3913 5.9268 43 1 8.7484 -0.3508 5.7053 44 1 11.1441 0.1012 5.5829 45 1 10.4880 0.7806 7.0851 46 1 12.0850 2.3086 5.9290 47 1 10.4679 3.0108 6.1359 48 1 11.9340 0.6320 3.7823 49 1 13.8243 -0.9628 1.5438 50 1 9.9205 1.9907 1.6083 51 1 9.0163 3.5030 1.9414 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000992927271.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:49:29 Heat of formation + Delta-G solvation = 71.560369 kcal Electronic energy + Delta-G solvation = -31034.688785 eV Core-core repulsion = 26971.237847 eV Total energy + Delta-G solvation = -4063.450938 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -43.48150 -40.19789 -38.59689 -35.52047 -35.25078 -33.69021 -33.57603 -31.38750 -30.84019 -29.91964 -28.84573 -28.21159 -26.90165 -25.47642 -23.99731 -23.02527 -22.33886 -21.17024 -20.83583 -20.59753 -18.88359 -18.60931 -17.53028 -17.11626 -16.89846 -16.55178 -15.87862 -15.38708 -15.01335 -14.77214 -14.55756 -14.39704 -14.09859 -13.97430 -13.74245 -13.55173 -13.32359 -12.95335 -12.85286 -12.60972 -12.35483 -12.27210 -12.14260 -11.83869 -11.65368 -11.54011 -11.39547 -11.29685 -11.11024 -10.85332 -10.83296 -10.71062 -10.34040 -10.30684 -10.23408 -10.06314 -9.88283 -9.56123 -9.48498 -9.33088 -9.29212 -8.86381 -8.16894 -6.95534 -5.76779 -3.04506 1.31990 2.05812 2.31349 2.98407 3.33386 3.46665 3.54343 3.54745 3.99838 4.24123 4.48539 4.52140 4.61518 4.73654 4.77172 4.79900 4.94207 5.10359 5.10747 5.18727 5.25767 5.39277 5.48408 5.54452 5.57874 5.62607 5.71756 5.73856 5.84403 5.86809 5.90279 6.01480 6.02376 6.03827 6.11551 6.12947 6.17929 6.26359 6.29252 6.37539 6.43182 6.59261 6.67741 6.69114 6.81949 6.90672 6.91689 7.15256 7.73210 7.93873 8.28281 8.42145 8.51231 9.54365 10.10830 10.45769 11.45454 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.012258 B = 0.002551 C = 0.002285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2283.693123 B =10972.962668 C =12249.983815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.298 5.298 3 C -0.051 4.051 4 C -0.013 4.013 5 C -0.017 4.017 6 C -0.128 4.128 7 C 0.525 3.475 8 O -0.552 6.552 9 N -0.616 5.616 10 C 0.115 3.885 11 C -0.108 4.108 12 H 0.105 0.895 13 C -0.096 4.096 14 C -0.115 4.115 15 C -0.121 4.121 16 C 0.188 3.812 17 H 0.053 0.947 18 N -0.716 5.716 19 C -0.237 4.237 20 H 0.071 0.929 21 C -0.010 4.010 22 N -0.930 5.930 23 Si 0.900 3.100 24 H -0.279 1.279 25 H -0.293 1.293 26 H -0.292 1.292 27 C -0.119 4.119 28 H 0.062 0.938 29 C 0.117 3.883 30 N -0.262 5.262 31 N -0.088 5.088 32 H 0.090 0.910 33 H 0.101 0.899 34 H 0.098 0.902 35 H 0.191 0.809 36 H 0.090 0.910 37 H 0.088 0.912 38 H 0.087 0.913 39 H 0.099 0.901 40 H 0.059 0.941 41 H 0.066 0.934 42 H 0.054 0.946 43 H 0.058 0.942 44 H 0.067 0.933 45 H 0.053 0.947 46 H 0.062 0.938 47 H 0.053 0.947 48 H 0.385 0.615 49 H 0.254 0.746 50 H 0.101 0.899 51 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.818 3.298 4.328 25.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.092 5.092 3 C -0.201 4.201 4 C -0.151 4.151 5 C -0.056 4.056 6 C -0.169 4.169 7 C 0.314 3.686 8 O -0.431 6.431 9 N -0.350 5.350 10 C -0.008 4.008 11 C -0.127 4.127 12 H 0.123 0.877 13 C -0.134 4.134 14 C -0.153 4.153 15 C -0.159 4.159 16 C 0.077 3.923 17 H 0.071 0.929 18 N -0.357 5.357 19 C -0.368 4.368 20 H 0.089 0.911 21 C -0.206 4.206 22 N -0.579 5.579 23 Si 0.731 3.269 24 H -0.205 1.205 25 H -0.220 1.220 26 H -0.219 1.219 27 C -0.141 4.141 28 H 0.081 0.919 29 C -0.004 4.004 30 N -0.129 5.129 31 N -0.068 5.068 32 H 0.109 0.891 33 H 0.119 0.881 34 H 0.117 0.883 35 H 0.208 0.792 36 H 0.109 0.891 37 H 0.106 0.894 38 H 0.106 0.894 39 H 0.117 0.883 40 H 0.077 0.923 41 H 0.084 0.916 42 H 0.073 0.927 43 H 0.077 0.923 44 H 0.085 0.915 45 H 0.072 0.928 46 H 0.081 0.919 47 H 0.071 0.929 48 H 0.220 0.780 49 H 0.064 0.936 50 H 0.119 0.881 51 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -24.719 2.275 3.654 25.091 hybrid contribution 0.093 0.936 -0.783 1.224 sum -24.626 3.212 2.871 25.000 Atomic orbital electron populations 1.22249 0.72844 1.05877 1.04948 1.47243 1.09351 1.05028 1.47551 1.23414 0.90871 0.94704 1.11145 1.22102 0.95407 0.91460 1.06109 1.19623 0.89227 0.97245 0.99517 1.21537 0.93953 1.01466 0.99905 1.20184 0.84173 0.83807 0.80477 1.90682 1.79294 1.36301 1.36831 1.49247 1.19940 1.38273 1.27511 1.21704 0.98545 0.92196 0.88373 1.21850 0.96394 0.99196 0.95210 0.87676 1.20868 0.97422 1.00713 0.94381 1.21108 0.96296 0.98493 0.99363 1.21793 1.00739 0.96428 0.96967 1.19899 0.88416 0.94152 0.89821 0.92906 1.42444 1.58982 1.14788 1.19515 1.19248 1.24499 0.98865 0.94155 0.91064 1.24691 1.00952 0.96286 0.98695 1.69653 1.43789 1.05846 1.38581 0.86217 0.78592 0.77624 0.84429 1.20457 1.21984 1.21901 1.22857 1.00620 0.95780 0.94815 0.91920 1.22228 0.84398 0.96218 0.97570 1.75087 1.09235 1.12142 1.16413 1.78323 0.96526 1.12125 1.19776 0.89136 0.88067 0.88324 0.79209 0.89129 0.89377 0.89423 0.88251 0.92257 0.91558 0.92682 0.92282 0.91476 0.92838 0.91885 0.92865 0.78008 0.93596 0.88077 0.91866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.24 11.39 59.85 0.68 0.92 16 2 N -0.30 -2.53 3.74 -68.05 -0.25 -2.79 16 3 C -0.05 -0.43 11.54 -17.05 -0.20 -0.62 16 4 C -0.01 -0.15 6.50 -82.78 -0.54 -0.69 16 5 C -0.02 -0.19 5.08 -27.88 -0.14 -0.34 16 6 C -0.13 -1.64 4.89 -27.88 -0.14 -1.77 16 7 C 0.53 8.78 7.86 -10.99 -0.09 8.69 16 8 O -0.55 -11.02 16.28 5.55 0.09 -10.93 16 9 N -0.62 -10.39 3.38 -170.71 -0.58 -10.97 16 10 C 0.11 1.65 6.23 -3.42 -0.02 1.63 16 11 C -0.11 -1.68 2.24 -90.36 -0.20 -1.89 16 12 H 0.11 2.05 6.68 -51.93 -0.35 1.70 16 13 C -0.10 -1.26 5.57 -28.10 -0.16 -1.42 16 14 C -0.11 -1.63 5.54 -27.56 -0.15 -1.78 16 15 C -0.12 -1.84 5.51 -26.55 -0.15 -1.99 16 16 C 0.19 3.44 3.02 -68.21 -0.21 3.24 16 17 H 0.05 1.01 8.07 -51.93 -0.42 0.59 16 18 N -0.72 -16.31 3.84 -53.70 -0.21 -16.52 16 19 C -0.24 -6.18 8.04 -15.06 -0.12 -6.30 16 20 H 0.07 1.85 7.82 -52.49 -0.41 1.44 16 21 C -0.01 -0.28 5.50 -17.43 -0.10 -0.37 16 22 N -0.93 -27.19 13.06 55.49 0.72 -26.47 16 23 Si 0.90 22.47 29.55 -169.99 -5.02 17.45 16 24 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 25 H -0.29 -7.36 7.11 56.52 0.40 -6.95 16 26 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 27 C -0.12 -1.97 2.32 -89.77 -0.21 -2.18 16 28 H 0.06 0.96 8.03 -51.93 -0.42 0.54 16 29 C 0.12 2.20 6.45 -2.69 -0.02 2.18 16 30 N -0.26 -3.68 12.40 33.29 0.41 -3.27 16 31 N -0.09 -1.10 13.16 60.35 0.79 -0.31 16 32 H 0.09 0.14 8.14 -51.93 -0.42 -0.28 16 33 H 0.10 0.23 8.14 -51.93 -0.42 -0.19 16 34 H 0.10 0.03 8.14 -51.93 -0.42 -0.39 16 35 H 0.19 0.83 8.06 -52.48 -0.42 0.41 16 36 H 0.09 1.19 8.10 -51.93 -0.42 0.77 16 37 H 0.09 0.92 8.08 -51.93 -0.42 0.50 16 38 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 39 H 0.10 1.31 8.14 -51.93 -0.42 0.89 16 40 H 0.06 0.72 8.08 -51.93 -0.42 0.30 16 41 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 42 H 0.05 0.66 8.04 -51.93 -0.42 0.24 16 43 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 44 H 0.07 1.10 7.03 -51.93 -0.37 0.73 16 45 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 46 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 47 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 48 H 0.38 9.38 6.09 -40.82 -0.25 9.13 16 49 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16 50 H 0.10 2.29 6.16 -51.93 -0.32 1.97 16 51 H 0.06 1.21 8.07 -51.93 -0.42 0.79 16 LS Contribution 402.45 15.07 6.06 6.06 Total: -1.00 -34.20 402.45 -8.13 -42.33 By element: Atomic # 1 Polarization: 16.50 SS G_CDS: -8.41 Total: 8.09 kcal Atomic # 6 Polarization: -0.94 SS G_CDS: -1.75 Total: -2.68 kcal Atomic # 7 Polarization: -61.21 SS G_CDS: 0.89 Total: -60.32 kcal Atomic # 8 Polarization: -11.02 SS G_CDS: 0.09 Total: -10.93 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -5.02 Total: 17.45 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -34.20 -8.13 -42.33 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992927271.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.886 kcal (2) G-P(sol) polarization free energy of solvation -34.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.325 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds