Wall clock time and date at job start Wed Apr 1 2020 05:49:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.35314 * 125.86548 * 2 1 4 4 C 1.35348 * 106.17576 * 180.25015 * 3 2 1 5 5 C 1.50696 * 126.75368 * 179.77437 * 4 3 2 6 6 C 1.53002 * 109.47196 * 124.99957 * 5 4 3 7 7 C 1.50694 * 109.47508 * 180.02562 * 6 5 4 8 8 O 1.21288 * 119.99952 * 359.97438 * 7 6 5 9 9 N 1.34776 * 120.00472 * 180.02562 * 7 6 5 10 10 C 1.48244 * 125.78045 * 0.02562 * 9 7 6 11 11 C 1.52331 * 105.86628 * 176.80579 * 10 9 7 12 12 H 1.09003 * 109.88126 * 272.31971 * 11 10 9 13 13 C 1.51442 * 117.44946 * 145.30341 * 11 10 9 14 14 C 1.51847 * 108.07191 * 182.01773 * 13 11 10 15 15 C 1.52529 * 111.84352 * 56.52700 * 14 13 11 16 16 C 1.53813 * 111.70255 * 306.38488 * 15 14 13 17 17 H 1.08998 * 109.94265 * 176.91482 * 16 15 14 18 18 N 1.46495 * 110.01678 * 298.12293 * 16 15 14 19 19 C 1.36936 * 120.00170 * 206.74384 * 18 16 15 20 20 H 1.07998 * 119.99894 * 0.02562 * 19 18 16 21 21 C 1.38804 * 120.00054 * 179.97438 * 19 18 16 22 22 N 1.31619 * 120.00407 * 0.02562 * 21 19 18 23 23 Si 1.86808 * 119.99968 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47090 * 359.97438 * 23 21 19 25 25 H 1.48496 * 109.46985 * 120.00106 * 23 21 19 26 26 H 1.48501 * 109.46958 * 240.00006 * 23 21 19 27 27 C 1.51623 * 107.01627 * 57.53875 * 16 15 14 28 28 H 1.08998 * 110.50057 * 55.19194 * 27 16 15 29 29 C 1.48660 * 125.78615 * 179.71579 * 9 7 6 30 30 N 1.33775 * 106.49351 * 359.64299 * 4 3 2 31 31 N 1.28628 * 108.88651 * 0.36884 * 30 4 3 32 32 H 1.09000 * 109.46806 * 90.00046 * 1 2 3 33 33 H 1.09000 * 109.46739 * 209.99844 * 1 2 3 34 34 H 1.08996 * 109.46904 * 329.99816 * 1 2 3 35 35 H 1.08003 * 126.91265 * 359.97438 * 3 2 1 36 36 H 1.09000 * 109.47482 * 244.99865 * 5 4 3 37 37 H 1.08999 * 109.47142 * 5.00041 * 5 4 3 38 38 H 1.09000 * 109.46830 * 300.00307 * 6 5 4 39 39 H 1.08999 * 109.47007 * 60.00001 * 6 5 4 40 40 H 1.09002 * 110.17085 * 295.89959 * 10 9 7 41 41 H 1.09001 * 110.17094 * 57.70578 * 10 9 7 42 42 H 1.09001 * 109.93463 * 300.62989 * 13 11 10 43 43 H 1.09000 * 109.93977 * 61.85840 * 13 11 10 44 44 H 1.09000 * 108.60602 * 296.14219 * 14 13 11 45 45 H 1.09003 * 109.29390 * 177.37891 * 14 13 11 46 46 H 1.09000 * 109.03158 * 185.81459 * 15 14 13 47 47 H 1.09002 * 108.97629 * 66.92082 * 15 14 13 48 48 H 0.97006 * 119.99654 * 26.74705 * 18 16 15 49 49 H 0.97004 * 120.00485 * 179.97438 * 22 21 19 50 50 H 1.08997 * 110.62730 * 274.11920 * 29 9 7 51 51 H 1.08997 * 110.62520 * 37.14430 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2578 1.0966 0.0000 4 6 3.5322 0.6406 -0.0057 5 6 4.7880 1.4736 -0.0127 6 6 5.6761 1.0673 1.1651 7 6 6.9316 1.9007 1.1584 8 8 7.0998 2.7370 0.2962 9 7 7.8681 1.7162 2.1100 10 6 7.7961 0.7340 3.2180 11 6 9.1169 0.8540 3.9674 12 1 9.8603 0.1972 3.5157 13 6 9.0880 0.6576 5.4687 14 6 10.4948 0.8715 5.9989 15 6 11.0425 2.2431 5.6176 16 6 10.9554 2.4890 4.1017 17 1 11.3026 3.4954 3.8678 18 7 11.7673 1.5016 3.3861 19 6 12.2907 1.8063 2.1580 20 1 12.1054 2.7746 1.7171 21 6 13.0604 0.8709 1.4802 22 7 13.2867 -0.3090 2.0176 23 14 13.7751 1.2868 -0.1949 24 1 13.3767 2.6661 -0.5745 25 1 15.2562 1.1969 -0.1373 26 1 13.2598 0.3277 -1.2049 27 6 9.4978 2.3409 3.7112 28 1 8.8734 3.0065 4.3072 29 6 9.1511 2.4585 2.2225 30 7 3.4576 -0.6951 -0.0008 31 7 2.2193 -1.0430 -0.0005 32 1 -0.3633 0.0000 -1.0277 33 1 -0.3633 -0.8900 0.5138 34 1 -0.3633 0.8899 0.5138 35 1 1.9381 2.1282 -0.0004 36 1 5.3263 1.3114 -0.9465 37 1 4.5253 2.5276 0.0769 38 1 5.1377 1.2295 2.0988 39 1 5.9387 0.0133 1.0754 40 1 6.9648 0.9751 3.8806 41 1 7.6800 -0.2740 2.8198 42 1 8.4247 1.3913 5.9268 43 1 8.7484 -0.3508 5.7053 44 1 11.1441 0.1012 5.5829 45 1 10.4880 0.7806 7.0851 46 1 12.0850 2.3086 5.9290 47 1 10.4679 3.0108 6.1359 48 1 11.9340 0.6320 3.7823 49 1 13.8243 -0.9628 1.5438 50 1 9.9205 1.9907 1.6083 51 1 9.0163 3.5030 1.9414 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000992927271.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:49:28 Heat of formation + Delta-G solvation = 48.740838 kcal Electronic energy + Delta-G solvation = -31035.678315 eV Core-core repulsion = 26971.237847 eV Total energy + Delta-G solvation = -4064.440468 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -44.20966 -41.54603 -39.94681 -36.84715 -36.09407 -35.38558 -34.44664 -33.08865 -31.98589 -30.98833 -30.42833 -28.71120 -28.26570 -26.59370 -25.63878 -24.51838 -23.00891 -22.14723 -22.11588 -21.72744 -20.21845 -19.99495 -19.08473 -18.28046 -17.66502 -17.55853 -17.13917 -16.62291 -16.52760 -15.90447 -15.86107 -15.62916 -15.51142 -15.18337 -14.80883 -14.48484 -14.22235 -14.12847 -13.99464 -13.71724 -13.57054 -13.39445 -13.30163 -13.15979 -12.96405 -12.87520 -12.67163 -12.62104 -12.57125 -12.37174 -12.29651 -12.09974 -11.77315 -11.65761 -11.58721 -11.34684 -11.08259 -11.00149 -10.87979 -10.85509 -10.53797 -10.12615 -9.57792 -8.91835 -7.91319 -5.14654 0.65916 1.42107 1.45656 1.46755 1.52285 1.59873 1.66063 2.06331 2.56440 3.28920 3.41292 3.48631 3.67860 3.77061 3.85487 3.93268 4.05246 4.11067 4.16475 4.20979 4.30119 4.35697 4.40660 4.44342 4.47202 4.53457 4.59730 4.66153 4.69496 4.70380 4.75780 4.77182 4.80281 4.90674 4.98871 5.00737 5.12447 5.12665 5.15285 5.21559 5.26648 5.31402 5.43509 5.48892 5.52404 5.59043 5.61075 5.71244 5.79800 6.32676 6.62649 7.17608 7.40325 7.51588 8.18863 8.41285 9.32024 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.012258 B = 0.002551 C = 0.002285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2283.693123 B =10972.962668 C =12249.983815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.288 5.288 3 C -0.027 4.027 4 C -0.038 4.038 5 C -0.009 4.009 6 C -0.113 4.113 7 C 0.519 3.481 8 O -0.591 6.591 9 N -0.620 5.620 10 C 0.116 3.884 11 C -0.100 4.100 12 H 0.058 0.942 13 C -0.088 4.088 14 C -0.113 4.113 15 C -0.113 4.113 16 C 0.178 3.822 17 H 0.043 0.957 18 N -0.721 5.721 19 C -0.214 4.214 20 H 0.068 0.932 21 C -0.072 4.072 22 N -0.964 5.964 23 Si 0.950 3.050 24 H -0.272 1.272 25 H -0.293 1.293 26 H -0.303 1.303 27 C -0.108 4.108 28 H 0.094 0.906 29 C 0.117 3.883 30 N -0.307 5.307 31 N -0.124 5.124 32 H 0.106 0.894 33 H 0.105 0.895 34 H 0.133 0.867 35 H 0.235 0.765 36 H 0.065 0.935 37 H 0.104 0.896 38 H 0.115 0.885 39 H 0.092 0.908 40 H 0.099 0.901 41 H 0.067 0.933 42 H 0.085 0.915 43 H 0.074 0.926 44 H 0.034 0.966 45 H 0.082 0.918 46 H 0.051 0.949 47 H 0.087 0.913 48 H 0.376 0.624 49 H 0.247 0.753 50 H 0.053 0.947 51 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.598 4.915 6.518 29.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.082 5.082 3 C -0.179 4.179 4 C -0.177 4.177 5 C -0.048 4.048 6 C -0.153 4.153 7 C 0.310 3.690 8 O -0.473 6.473 9 N -0.352 5.352 10 C -0.006 4.006 11 C -0.119 4.119 12 H 0.076 0.924 13 C -0.125 4.125 14 C -0.150 4.150 15 C -0.151 4.151 16 C 0.069 3.931 17 H 0.061 0.939 18 N -0.362 5.362 19 C -0.347 4.347 20 H 0.086 0.914 21 C -0.264 4.264 22 N -0.616 5.616 23 Si 0.781 3.219 24 H -0.197 1.197 25 H -0.220 1.220 26 H -0.231 1.231 27 C -0.130 4.130 28 H 0.112 0.888 29 C -0.005 4.005 30 N -0.173 5.173 31 N -0.103 5.103 32 H 0.124 0.876 33 H 0.124 0.876 34 H 0.151 0.849 35 H 0.252 0.748 36 H 0.084 0.916 37 H 0.122 0.878 38 H 0.134 0.866 39 H 0.110 0.890 40 H 0.117 0.883 41 H 0.085 0.915 42 H 0.103 0.897 43 H 0.093 0.907 44 H 0.053 0.947 45 H 0.101 0.899 46 H 0.069 0.931 47 H 0.105 0.895 48 H 0.210 0.790 49 H 0.056 0.944 50 H 0.071 0.929 51 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -28.551 3.895 5.875 29.409 hybrid contribution 1.144 0.542 -1.471 1.940 sum -27.407 4.437 4.404 28.111 Atomic orbital electron populations 1.22751 0.69696 1.07877 1.06633 1.47692 1.11067 1.04238 1.45240 1.24007 0.89601 0.96282 1.08003 1.22133 0.96491 0.90896 1.08153 1.19494 0.89238 0.98255 0.97831 1.21478 0.92165 0.99895 1.01804 1.20942 0.85058 0.83523 0.79500 1.90656 1.80275 1.38157 1.38182 1.49359 1.19039 1.38458 1.28385 1.21857 0.99074 0.91731 0.87920 1.21741 0.95796 0.97129 0.97229 0.92360 1.20851 0.97193 1.02653 0.91838 1.21106 0.96344 0.96584 1.00999 1.21718 1.00927 0.98304 0.94191 1.20188 0.88679 0.92355 0.91917 0.93878 1.42554 1.59452 1.15401 1.18754 1.19469 1.22210 0.98049 0.94960 0.91385 1.25260 1.02917 0.96715 1.01513 1.69770 1.45545 1.06663 1.39632 0.85403 0.77770 0.77277 0.81437 1.19704 1.22043 1.23055 1.22684 0.99540 0.97350 0.93391 0.88772 1.21952 0.84589 0.95406 0.98560 1.75013 1.10505 1.13795 1.18006 1.78231 0.96541 1.13759 1.21757 0.87552 0.87632 0.84881 0.74843 0.91615 0.87788 0.86641 0.88950 0.88294 0.91502 0.89676 0.90713 0.94699 0.89934 0.93057 0.89468 0.79011 0.94408 0.92883 0.92645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.17 11.39 127.77 1.46 1.62 16 2 N -0.29 -4.18 3.74 -369.22 -1.38 -5.56 16 3 C -0.03 -0.37 11.54 83.49 0.96 0.60 16 4 C -0.04 -0.82 6.50 41.59 0.27 -0.55 16 5 C -0.01 -0.19 5.08 29.85 0.15 -0.04 16 6 C -0.11 -2.76 4.89 29.85 0.15 -2.62 16 7 C 0.52 17.21 7.86 87.66 0.69 17.90 16 8 O -0.59 -23.99 16.28 -3.06 -0.05 -24.04 16 9 N -0.62 -20.57 3.38 -812.40 -2.75 -23.32 16 10 C 0.12 3.09 6.23 85.82 0.54 3.63 16 11 C -0.10 -2.98 2.24 -10.62 -0.02 -3.01 16 12 H 0.06 2.33 6.68 -2.39 -0.02 2.32 16 13 C -0.09 -1.99 5.57 29.70 0.17 -1.82 16 14 C -0.11 -2.91 5.54 30.06 0.17 -2.75 16 15 C -0.11 -3.19 5.51 30.71 0.17 -3.02 16 16 C 0.18 6.43 3.02 44.81 0.14 6.56 16 17 H 0.04 1.64 8.07 -2.39 -0.02 1.62 16 18 N -0.72 -33.94 3.84 -323.81 -1.24 -35.18 16 19 C -0.21 -11.62 8.04 84.03 0.68 -10.95 16 20 H 0.07 3.67 7.82 -2.91 -0.02 3.65 16 21 C -0.07 -4.14 5.50 84.86 0.47 -3.67 16 22 N -0.96 -58.89 13.06 21.65 0.28 -58.61 16 23 Si 0.95 48.08 29.55 68.60 2.03 50.10 16 24 H -0.27 -13.25 7.11 99.48 0.71 -12.54 16 25 H -0.29 -14.72 7.11 99.48 0.71 -14.01 16 26 H -0.30 -15.70 7.11 99.48 0.71 -14.99 16 27 C -0.11 -3.44 2.32 -10.24 -0.02 -3.47 16 28 H 0.09 2.50 8.03 -2.39 -0.02 2.48 16 29 C 0.12 4.49 6.45 86.07 0.56 5.05 16 30 N -0.31 -8.58 12.40 -48.60 -0.60 -9.18 16 31 N -0.12 -3.00 13.16 37.02 0.49 -2.51 16 32 H 0.11 -0.02 8.14 -2.39 -0.02 -0.04 16 33 H 0.11 0.21 8.14 -2.39 -0.02 0.19 16 34 H 0.13 -0.56 8.14 -2.39 -0.02 -0.58 16 35 H 0.24 0.83 8.06 -2.91 -0.02 0.81 16 36 H 0.07 1.79 8.10 -2.39 -0.02 1.77 16 37 H 0.10 1.98 8.08 -2.39 -0.02 1.96 16 38 H 0.12 2.18 8.14 -2.39 -0.02 2.16 16 39 H 0.09 2.42 8.14 -2.39 -0.02 2.40 16 40 H 0.10 1.94 8.08 -2.39 -0.02 1.92 16 41 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 42 H 0.08 1.51 8.04 -2.39 -0.02 1.49 16 43 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 44 H 0.03 1.13 7.03 -2.39 -0.02 1.11 16 45 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 46 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 47 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 48 H 0.38 19.13 6.09 -92.70 -0.56 18.56 16 49 H 0.25 14.84 8.31 -92.71 -0.77 14.07 16 50 H 0.05 2.54 6.16 -2.39 -0.01 2.53 16 51 H 0.06 2.16 8.07 -2.39 -0.02 2.14 16 Total: -1.00 -81.06 402.45 3.64 -77.42 By element: Atomic # 1 Polarization: 27.04 SS G_CDS: 0.36 Total: 27.41 kcal Atomic # 6 Polarization: -3.04 SS G_CDS: 6.50 Total: 3.46 kcal Atomic # 7 Polarization: -129.15 SS G_CDS: -5.20 Total: -134.35 kcal Atomic # 8 Polarization: -23.99 SS G_CDS: -0.05 Total: -24.04 kcal Atomic # 14 Polarization: 48.08 SS G_CDS: 2.03 Total: 50.10 kcal Total: -81.06 3.64 -77.42 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992927271.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.165 kcal (2) G-P(sol) polarization free energy of solvation -81.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.424 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds