Wall clock time and date at job start Wed Apr 1 2020 05:09:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50708 * 119.99843 * 2 1 4 4 N 1.46500 * 109.46910 * 124.99687 * 3 2 1 5 5 C 1.34812 * 126.59458 * 125.29110 * 4 3 2 6 6 C 1.36603 * 106.84006 * 180.14575 * 5 4 3 7 7 C 1.47518 * 125.76932 * 179.83948 * 6 5 4 8 8 O 1.21596 * 120.00266 * 354.03849 * 7 6 5 9 9 N 1.34779 * 119.99872 * 174.32197 * 7 6 5 10 10 C 1.46499 * 119.99804 * 3.43414 * 9 7 6 11 11 C 1.53007 * 109.47292 * 83.57196 * 10 9 7 12 12 C 1.46500 * 120.00037 * 183.43632 * 9 7 6 13 13 H 1.09000 * 110.20990 * 180.02562 * 12 9 7 14 14 C 1.50130 * 110.24629 * 301.92878 * 12 9 7 15 15 C 1.54635 * 110.92770 * 216.54570 * 14 12 9 16 16 C 1.54899 * 110.19260 * 321.33896 * 15 14 12 17 17 N 1.43433 * 116.07929 * 318.53341 * 16 15 14 18 18 C 1.36944 * 120.53789 * 271.58780 * 17 16 15 19 19 H 1.08001 * 119.99687 * 338.10561 * 18 17 16 20 20 C 1.38803 * 120.00274 * 158.10714 * 18 17 16 21 21 N 1.31621 * 120.00109 * 337.96658 * 20 18 17 22 22 Si 1.86803 * 120.00158 * 157.97566 * 20 18 17 23 23 H 1.48501 * 109.47362 * 89.99556 * 22 20 18 24 24 H 1.48496 * 109.47198 * 209.99693 * 22 20 18 25 25 H 1.48501 * 109.47016 * 329.99887 * 22 20 18 26 26 C 1.50168 * 118.92827 * 91.56229 * 17 16 15 27 27 C 1.46237 * 107.53396 * 289.59048 * 26 17 16 28 28 N 1.34405 * 108.45547 * 359.57489 * 6 5 4 29 29 N 1.28757 * 109.52250 * 0.26697 * 28 6 5 30 30 H 1.08000 * 119.99904 * 0.02562 * 1 2 3 31 31 H 1.07994 * 120.00033 * 179.97438 * 1 2 3 32 32 H 1.08000 * 120.00389 * 179.97438 * 2 1 3 33 33 H 1.08995 * 109.46794 * 4.99243 * 3 2 1 34 34 H 1.09003 * 109.46658 * 244.99308 * 3 2 1 35 35 H 1.07997 * 126.58288 * 359.97438 * 5 4 3 36 36 H 1.09001 * 109.46899 * 203.56821 * 10 9 7 37 37 H 1.08996 * 109.47145 * 323.56964 * 10 9 7 38 38 H 1.09001 * 109.46842 * 299.99659 * 11 10 9 39 39 H 1.09000 * 109.46822 * 59.99515 * 11 10 9 40 40 H 1.09001 * 109.47143 * 180.02562 * 11 10 9 41 41 H 1.08995 * 109.21204 * 336.99935 * 14 12 9 42 42 H 1.09002 * 109.20840 * 96.31794 * 14 12 9 43 43 H 1.09000 * 109.42619 * 201.06007 * 15 14 12 44 44 H 1.09004 * 109.13477 * 81.43219 * 15 14 12 45 45 H 1.08998 * 108.16380 * 196.81245 * 16 15 14 46 46 H 1.09006 * 107.99752 * 80.11638 * 16 15 14 47 47 H 0.96997 * 119.99996 * 179.97438 * 21 20 18 48 48 H 1.09007 * 109.84301 * 170.08681 * 26 17 16 49 49 H 1.08993 * 109.84394 * 49.09974 * 26 17 16 50 50 H 1.09005 * 108.52482 * 297.16791 * 27 26 17 51 51 H 1.09000 * 108.40297 * 179.56511 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 2.9937 1.3320 1.1315 5 6 4.3220 1.5552 1.0748 6 6 4.7899 1.4865 2.3563 7 6 6.1938 1.6651 2.7724 8 8 7.0657 1.7877 1.9337 9 7 6.5109 1.6868 4.0822 10 6 5.4735 1.4578 5.0909 11 6 5.2720 -0.0467 5.2830 12 6 7.8931 1.9392 4.4972 13 1 7.9691 1.9209 5.5844 14 6 8.8115 0.9155 3.8952 15 6 9.9407 0.5383 4.8820 16 6 10.4228 1.7949 5.6486 17 7 10.5589 2.9934 4.8724 18 6 11.7342 3.2760 4.2288 19 1 12.6552 2.8210 4.5621 20 6 11.7417 4.1470 3.1481 21 7 10.6352 4.3624 2.4687 22 14 13.3224 5.0133 2.6576 23 1 14.0587 4.1800 1.6734 24 1 12.9978 6.3281 2.0485 25 1 14.1673 5.2204 3.8612 26 6 9.3915 3.9331 4.7764 27 6 8.3693 3.2836 3.9568 28 7 3.7538 1.2345 3.1746 29 7 2.6726 1.1366 2.4823 30 1 -0.5400 0.9353 -0.0004 31 1 -0.5400 -0.9353 -0.0004 32 1 1.8500 -0.9353 0.0004 33 1 1.3585 2.1316 0.0894 34 1 2.6213 1.4026 -0.9314 35 1 4.9048 1.7482 0.1863 36 1 5.7799 1.9069 6.0356 37 1 4.5387 1.9102 4.7598 38 1 4.9655 -0.4957 4.3382 39 1 6.2068 -0.4990 5.6140 40 1 4.4997 -0.2170 6.0332 41 1 8.2388 0.0222 3.6461 42 1 9.2545 1.3218 2.9858 43 1 10.7766 0.1092 4.3295 44 1 9.5629 -0.1961 5.5934 45 1 11.3903 1.5690 6.0970 46 1 9.7148 1.9905 6.4540 47 1 10.6404 4.9713 1.7137 48 1 9.7048 4.8657 4.3070 49 1 8.9953 4.1338 5.7718 50 1 8.7734 3.1310 2.9560 51 1 7.5109 3.9514 3.8842 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000998140095.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:09:45 Heat of formation + Delta-G solvation = 116.308946 kcal Electronic energy + Delta-G solvation = -32140.773699 eV Core-core repulsion = 28079.263205 eV Total energy + Delta-G solvation = -4061.510495 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -43.25341 -41.18216 -38.92537 -37.07752 -36.72664 -34.83314 -33.73594 -33.23572 -32.45141 -31.72676 -30.65967 -28.25382 -27.70121 -25.99453 -24.91767 -24.64983 -23.47772 -23.35489 -21.99148 -21.28841 -20.88535 -20.00547 -18.60537 -18.26647 -17.35451 -17.16929 -16.97896 -16.76202 -16.12667 -15.90727 -15.74662 -15.59023 -15.35162 -15.23696 -14.99024 -14.74783 -14.56413 -14.35468 -13.87961 -13.53718 -13.50985 -13.29089 -13.16340 -13.07560 -12.98482 -12.76239 -12.62670 -12.55688 -12.41704 -12.26811 -12.01275 -11.90106 -11.73375 -11.62883 -11.48004 -11.27093 -11.04092 -10.94044 -10.71316 -10.56810 -10.40013 -10.26757 -9.47115 -8.61997 -7.75790 -5.14919 0.15605 0.69451 0.79355 1.48372 1.50678 1.59523 1.59835 2.05948 2.31863 2.58725 3.17870 3.35511 3.40690 3.65962 3.71091 3.81397 3.98466 4.04704 4.10999 4.17749 4.25223 4.34713 4.41778 4.49743 4.53710 4.58975 4.61377 4.63716 4.73698 4.75392 4.90249 4.93484 4.93885 4.98548 5.16726 5.24149 5.28071 5.30581 5.37532 5.40269 5.46234 5.48407 5.57384 5.62058 5.67045 5.71165 5.74729 5.90204 6.24800 6.46520 6.56414 6.91586 7.22654 7.28760 7.97668 8.47404 9.27773 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.016947 B = 0.002815 C = 0.002539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1651.805948 B = 9944.339381 C =11024.380883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.197 4.197 3 C 0.141 3.859 4 N -0.345 5.345 5 C 0.101 3.899 6 C -0.119 4.119 7 C 0.589 3.411 8 O -0.561 6.561 9 N -0.593 5.593 10 C 0.098 3.902 11 C -0.146 4.146 12 C 0.170 3.830 13 H 0.100 0.900 14 C -0.090 4.090 15 C -0.136 4.136 16 C 0.149 3.851 17 N -0.600 5.600 18 C -0.259 4.259 19 H 0.065 0.935 20 C -0.047 4.047 21 N -0.912 5.912 22 Si 0.955 3.045 23 H -0.292 1.292 24 H -0.295 1.295 25 H -0.274 1.274 26 C 0.172 3.828 27 C -0.120 4.120 28 N -0.208 5.208 29 N -0.082 5.082 30 H 0.116 0.884 31 H 0.114 0.886 32 H 0.107 0.893 33 H 0.120 0.880 34 H 0.142 0.858 35 H 0.225 0.775 36 H 0.088 0.912 37 H 0.100 0.900 38 H 0.037 0.963 39 H 0.049 0.951 40 H 0.083 0.917 41 H 0.038 0.962 42 H 0.031 0.969 43 H 0.036 0.964 44 H 0.079 0.921 45 H 0.035 0.965 46 H 0.052 0.948 47 H 0.243 0.757 48 H 0.056 0.944 49 H 0.030 0.970 50 H 0.077 0.923 51 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.522 -8.260 -1.670 24.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.216 4.216 3 C 0.023 3.977 4 N -0.130 5.130 5 C -0.056 4.056 6 C -0.258 4.258 7 C 0.375 3.625 8 O -0.439 6.439 9 N -0.324 5.324 10 C -0.024 4.024 11 C -0.204 4.204 12 C 0.068 3.932 13 H 0.118 0.882 14 C -0.129 4.129 15 C -0.177 4.177 16 C 0.021 3.979 17 N -0.322 5.322 18 C -0.389 4.389 19 H 0.082 0.918 20 C -0.243 4.243 21 N -0.558 5.558 22 Si 0.785 3.215 23 H -0.220 1.220 24 H -0.222 1.222 25 H -0.199 1.199 26 C 0.048 3.952 27 C -0.160 4.160 28 N -0.082 5.082 29 N -0.062 5.062 30 H 0.134 0.866 31 H 0.133 0.867 32 H 0.125 0.875 33 H 0.137 0.863 34 H 0.160 0.840 35 H 0.242 0.758 36 H 0.107 0.893 37 H 0.117 0.883 38 H 0.056 0.944 39 H 0.068 0.932 40 H 0.102 0.898 41 H 0.057 0.943 42 H 0.050 0.950 43 H 0.055 0.945 44 H 0.098 0.902 45 H 0.053 0.947 46 H 0.070 0.930 47 H 0.053 0.947 48 H 0.075 0.925 49 H 0.048 0.952 50 H 0.096 0.904 51 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges -23.236 -8.349 -1.255 24.722 hybrid contribution 1.740 0.623 -1.650 2.477 sum -21.496 -7.726 -2.905 23.026 Atomic orbital electron populations 1.24197 0.95156 1.03826 0.94581 1.22840 0.96784 0.97073 1.04907 1.21578 0.92096 0.98706 0.85300 1.50759 1.06631 1.46566 1.09062 1.23718 0.85101 0.96292 1.00526 1.21416 0.94582 1.17979 0.91812 1.17223 0.85738 0.76568 0.82955 1.90874 1.49302 1.51557 1.52170 1.48158 1.09678 1.69089 1.05484 1.22053 0.91253 0.97769 0.91342 1.21959 1.01653 0.95238 1.01529 1.20319 0.79074 0.95171 0.98680 0.88177 1.21436 0.95946 0.96812 0.98696 1.22802 0.96846 0.99504 0.98548 1.20585 0.98566 0.85896 0.92812 1.44430 1.11541 1.18486 1.57757 1.19378 0.86636 1.24550 1.08377 0.91775 1.25538 0.99179 1.03401 0.96188 1.70236 1.27873 1.38303 1.19388 0.85468 0.80576 0.77840 0.77635 1.21965 1.22188 1.19876 1.20032 0.86266 0.94026 0.94890 1.21095 0.96703 0.94527 1.03650 1.74726 0.96319 1.10653 1.26486 1.81874 1.17411 1.22253 0.84697 0.86570 0.86747 0.87490 0.86253 0.84047 0.75848 0.89338 0.88266 0.94366 0.93180 0.89782 0.94349 0.94971 0.94496 0.90229 0.94706 0.92969 0.94737 0.92515 0.95210 0.90416 0.96370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.00 14.32 67.78 0.97 -0.03 16 2 C -0.20 -1.95 9.72 25.65 0.25 -1.70 16 3 C 0.14 1.29 6.98 85.64 0.60 1.89 16 4 N -0.35 -6.46 3.68 -350.82 -1.29 -7.75 16 5 C 0.10 2.29 11.28 83.85 0.95 3.24 16 6 C -0.12 -3.56 6.51 40.82 0.27 -3.29 16 7 C 0.59 22.02 6.96 86.69 0.60 22.63 16 8 O -0.56 -25.62 14.16 -4.02 -0.06 -25.67 16 9 N -0.59 -20.55 2.32 -807.65 -1.87 -22.42 16 10 C 0.10 2.62 5.71 86.38 0.49 3.12 16 11 C -0.15 -3.48 9.71 71.98 0.70 -2.78 16 12 C 0.17 6.61 2.37 43.91 0.10 6.71 16 13 H 0.10 3.49 5.91 -2.39 -0.01 3.48 16 14 C -0.09 -3.84 4.10 30.23 0.12 -3.72 16 15 C -0.14 -5.24 6.40 31.80 0.20 -5.03 16 16 C 0.15 6.17 5.18 87.60 0.45 6.62 16 17 N -0.60 -30.14 2.61 -707.84 -1.85 -31.99 16 18 C -0.26 -14.47 9.62 84.03 0.81 -13.66 16 19 H 0.06 3.54 7.90 -2.91 -0.02 3.52 16 20 C -0.05 -2.68 4.86 84.86 0.41 -2.27 16 21 N -0.91 -54.53 9.54 21.65 0.21 -54.32 16 22 Si 0.96 46.29 29.61 68.60 2.03 48.32 16 23 H -0.29 -14.17 7.11 99.48 0.71 -13.46 16 24 H -0.30 -14.37 7.11 99.48 0.71 -13.66 16 25 H -0.27 -12.75 7.11 99.48 0.71 -12.04 16 26 C 0.17 8.36 5.25 83.58 0.44 8.80 16 27 C -0.12 -5.64 3.77 28.35 0.11 -5.54 16 28 N -0.21 -5.79 7.53 -49.99 -0.38 -6.17 16 29 N -0.08 -2.03 13.64 37.02 0.50 -1.52 16 30 H 0.12 0.51 7.84 -2.91 -0.02 0.49 16 31 H 0.11 0.65 8.06 -2.91 -0.02 0.63 16 32 H 0.11 1.27 8.06 -2.91 -0.02 1.25 16 33 H 0.12 0.71 7.79 -2.39 -0.02 0.69 16 34 H 0.14 0.50 8.08 -2.39 -0.02 0.49 16 35 H 0.23 3.94 8.06 -2.91 -0.02 3.92 16 36 H 0.09 2.06 7.81 -2.39 -0.02 2.04 16 37 H 0.10 2.71 5.30 -2.39 -0.01 2.69 16 38 H 0.04 1.03 7.01 -2.39 -0.02 1.01 16 39 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 40 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 41 H 0.04 1.56 7.82 -2.39 -0.02 1.55 16 42 H 0.03 1.72 6.37 -2.39 -0.02 1.70 16 43 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 44 H 0.08 2.48 8.14 -2.38 -0.02 2.46 16 45 H 0.03 1.42 7.99 -2.39 -0.02 1.40 16 46 H 0.05 1.88 6.88 -2.38 -0.02 1.86 16 47 H 0.24 14.38 8.31 -92.71 -0.77 13.61 16 48 H 0.06 3.14 6.02 -2.38 -0.01 3.13 16 49 H 0.03 1.28 8.12 -2.39 -0.02 1.26 16 50 H 0.08 4.44 4.53 -2.38 -0.01 4.43 16 51 H 0.02 0.83 8.02 -2.39 -0.02 0.81 16 Total: -1.00 -74.71 395.59 5.70 -69.01 By element: Atomic # 1 Polarization: 16.61 SS G_CDS: 0.92 Total: 17.53 kcal Atomic # 6 Polarization: 7.51 SS G_CDS: 7.48 Total: 14.98 kcal Atomic # 7 Polarization: -119.50 SS G_CDS: -4.67 Total: -124.17 kcal Atomic # 8 Polarization: -25.62 SS G_CDS: -0.06 Total: -25.67 kcal Atomic # 14 Polarization: 46.29 SS G_CDS: 2.03 Total: 48.32 kcal Total: -74.71 5.70 -69.01 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000998140095.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 185.324 kcal (2) G-P(sol) polarization free energy of solvation -74.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.015 kcal (6) G-S(sol) free energy of system = (1) + (5) 116.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds